Array 1 5102-2128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCO010000004.1 Streptosporangium sandarakinum strain DSM 45763 Ga0415185_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 5101 28 96.4 33 ..........T................. GGGCAACGATGTGGCCGGGTGGACGTCGATCTT 5040 28 96.4 33 ..............C............. GGCGTTGACGTGGCCGAGCCTGCCCGTGGCGAG 4979 28 92.9 33 .............TC............. GGTCATCAGGTCTGGCACGGACGTTCTCAGCAC 4918 28 82.1 35 .......T......C...A.......GG TCCCCGCAACTCCAGCGGGGTGCTGCTGCCGAGCG 4855 28 85.7 33 ..........TAT.C............. GTCGTGTATGCCCGGGAGCTGGTCGCCCGGGTG 4794 28 92.9 33 ..............C.....A....... CTGCCACAGCATGTGGACCGCGGCCTCCGGCGT 4733 28 89.3 33 ............GAC............. CCACGGTCACGATGCCACCTCCGCCAATGGCAC 4672 28 100.0 33 ............................ GCCGCCGGCGAACCGCCTGACGCGCTTATCCGT 4611 28 92.9 33 ..............C..........A.. GCGGAACCAACGTCGTGAGTAGCGAAACTCATG 4550 28 89.3 51 A..........A..C............. GATGGGTAAGGCGCTGCGCCTGGACGACGAGGAGTCGGCCCCGTGCGGCGT 4471 28 100.0 33 ............................ GGTGCAAAGGATGGACGCTGGAGCGCGCAGGCT 4410 28 100.0 32 ............................ GGCAACGGCACCCTCGACGCCGGCCCGCCCGC 4349 28 96.4 33 .......................A.... CAGCGCGTCTCACTGAGCCTGGGTAAGGACGTC 4288 28 92.9 33 ...................A.C...... CTGGACGGAGACCATCGTGAGGAAGCTCCCCAC 4227 28 96.4 33 ..............C............. GGAGTTCGAGTGGAAGCGCCTGTACACGGGGGT 4166 28 100.0 32 ............................ GGGGCGGACGAAAAAGGACGCAGCGTACTGTG 4105 28 96.4 33 ..............C............. CGTGGTTCGTCACGTCCCGGCTTGGCCGTCGAT 4044 28 92.9 33 ........................A..T GAGGGTGGCCCGCCTCACCCCTCCAGTAGGCGG 3983 28 100.0 33 ............................ CAGGCGATGACGCCTTCTTTGACCGCCTATCAG 3922 28 89.3 33 .C.........A..C............. ATGCTCCCGTTACAGATGGGGGTACATCCCCAC 3861 28 92.9 33 ...........A..C............. CCGCTTCGGCCGCAACCGCACCGGTAACGCGGT 3800 28 92.9 33 ...........A..C............. CACCCTTCTCGGTGCTTACTCCCTCATGCACTC 3739 28 100.0 33 ............................ GGGGTCGTGATCCCGCCGAACCGGCAAGACCCG 3678 28 100.0 33 ............................ CGTCCAGCGGCTCCTGACCCGCGTCGCCCTCGC 3617 28 100.0 33 ............................ GCCGGACATCTTCGAGGAGACGTACGAGCCCGT 3556 28 100.0 33 ............................ GCTGGAGATCGACCGGTTGGACCGCATCATGGC 3495 28 92.9 32 .............TC............. GGTCGACCTGGACAGGACGATGCTCGCCCCGG 3435 28 85.7 33 ..T.........GAC............. TGAGCGCTTCGAGCGCCACCTGGCCCGCCGCAA 3374 28 78.6 33 .....T......GGC.........A..T CTACCCCGAGGCCATGCTCAAGGCCCGCGCCGT 3313 28 85.7 33 A.T..........TC............. TCCAGATGAGAGGTAGCGCTGTGAGCCCCGCCC 3252 28 100.0 33 ............................ GTAGTCCCAGAGCGTGACGGACTCCGGCAGCCC 3191 28 92.9 32 ......T.......C............. AGCGGCACGCTGGCCACGCCGTCGGGCGGCGT T [3164] 3130 28 92.9 33 ..T...........C............. CCGGATCGTCTCCTGGTACGCCGACATCAAGGG 3069 28 96.4 33 ....................A....... GGAGGCGCGTGCCCGGGTTCGCGCCGCCCAAGC 3008 28 89.3 33 ..............C.....A..A.... GTCTCCGGAGCAGGTGCGTCAGGAGATGGACGC 2947 28 96.4 33 ..............C............. CTTGTGGTCCGGGAGTTGGCGCTCCCGGCCTTT 2886 28 92.9 33 ............T.C............. CTCCACCAGGGTGAGCCCGTTGTCGGGGTCGCC 2825 28 100.0 33 ............................ CTACCACTACATCACGTCGCAGGTGGCAGGTAG 2764 28 96.4 33 .................A.......... TCCGATCGAGTGGTGGATGACGGGTGGCCGGTC 2703 28 100.0 33 ............................ CCTTGAAGACGTGACCCTCACCGCGGTTACGTT 2642 28 92.9 33 ..T...........C............. GGAGTCGGGCGCTGGATCGGACAAGGCCATGAC 2581 28 89.3 33 ....A......A..C............. GCACGGCAGCTTCGCGGCGAAGGAGTATCAGCA 2520 28 96.4 33 .......T.................... GCTGTTCGGGCCCGTGGACGTGGCCGCCCTGAT 2459 28 96.4 33 .........................C.. GGGCGAGACGACCACCAACGCCGCTATCGCGGT 2398 28 85.7 33 ..T..........TC........A.... GGACTGCACGCTGTAGCCGGCGCTGCGGAGGAT 2337 26 82.1 33 ............GGC.....-...-... CGTGCCGCTCCCCCACGCTGCCACGGCTCCGGT 2278 28 89.3 32 ...........A..C..........C.. GGTTGGGATAAGCGACGGCTAATCGTTCTCCG G [2257] 2216 28 100.0 33 ............................ GCTCCTCGTCTGGGGCGCGCTCGGCAACATCGT 2155 28 96.4 0 ..............C............. | ========== ====== ====== ====== ============================ =================================================== ================== 49 28 93.8 33 GTCGGCCCCGCGCCTGCGGGGATGGTCC # Left flank : ATCTTCGACCAGCCCGCCGCCGAACAGGTCCGCGCCCAGCACGCCTGGGTCATCGACGCCCTGGAGGCGAAGTATCCGGCCACCGCCGAGCATCTGGACGCCGCCCGCGAGGAACTCCTGGCCTTCGCGGCGTTTCCTAAGGAGACCTGGCGGCAGATCTGGTCCAACAATCCCCAGGAGCGGTTGAACAAGGAGATCAGGCGCCGCACCGACGTGGTGGGGATCTTCCCTGACCGCGCCGCGATCGTCCGTCTCGTCGGTGCGGTTTTGGCCGAGCAGACCGATGAGTGGACCGAGGCCCGCCGCTACATGGGCCTGGACATCCTCGCCAAGTGCCGTATGCGCCTGCTGGCCGGCGACACACCGGAACAGAGTCTGATCCCGCAGACACTCACCGCTTAACCTGCAGAAACAGGATCACGCGAAGGCCGGCTCATACACCACTTCGCTGGACGTGACCATGGTCCCAGGGCGGCCAACTCGGCGTCGAACAGGTCGAG # Right flank : TAACCCGTAGATCGAGGGCTTCTTGGCGATGGAGTCAGCCCTGCGCCTCGTCTGGCAGCGGCGTGCCGTAAATCCCCGAGCGCTCGCGGCGGCCGCCATGGTTTCAGCGGGCCAGGGTCGCGCGGAGCGCGGTCCGATCGCCGGCGTACAGCTCGACTATCACCGCCAGGACCCGTCCCTCCTGCTCATCGGCCAAGGTGGAGAACTGCTCCAGCACCGGCGTAGCCGGCAGCAGCCCCAGCAGGCGCTCCTCCTCCTCACTGGGCATCCGCGCGATGAACGTCGCCTCGTGAGCGACACCGAGCCCGGCCCTTCCCAGCCACGCCGCGTCCGGCTCCTGCAGCGGCTTCGGCCCACGCAGCTCCGGGGCCCGCTCGACCAGTTCGGCGGCAAGGTAGACGTCAGCGATCCGGCCCGGCCGGATCGCGCGGCGGCGCACCACCTCGATGGCGTCCGGCATCAGCACCACGACGAAACCGGGCGGCTCAACGATGCCGACC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [28-30] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 7685-6563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCO010000004.1 Streptosporangium sandarakinum strain DSM 45763 Ga0415185_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7684 28 92.9 33 ...........A..C............. CCGCGGCTGGGCAGACATCGGATACGGTTTCGG 7623 26 89.3 33 .......T...........--....... GGCCACGGGCGCCGATCGCCCCGACCCCGTACG 7564 28 100.0 33 ............................ GCTGTACATCGCCGTGCTCGGCACCCCCGAGAT 7503 28 92.9 33 ...........A..C............. CCGCGGCTGGGCAGACATCGGATACGGTTTCGG 7442 26 89.3 33 .......T...........--....... GGCCACGGGCGCCGATCGCCCCGACCCCGTACG 7383 28 100.0 33 ............................ GCTGTACATCGCCGTGCTCGGCACCCCCGAGAT 7322 28 92.9 33 ...........A..C............. GCTGGCCGGCTCGCTGCCGGTGACGGCCAGGAG 7261 28 92.9 33 ...........A..C............. GTCAAGGAAGGGCGAGGTCTTCGGCCCGTGGAA 7200 28 100.0 33 ............................ GGGCTAGTGACAGCCCGGCCTGGATCCGGGGCG 7139 28 100.0 33 ............................ GCTGGAGATCGACCGGTTGGACCACATCATGGC 7078 27 92.9 33 ............G.-............. CGAGATCACCTACCGGGGCCAGCGGCTCAACCC A [7068] 7017 28 92.9 33 ..............C.........A... ATGCGCCCCCTGGCGCACTGCTTCGACTGCGGA 6956 28 96.4 33 ..............G............. GTGCGCCGCGGCCGGCCCGGACGCCGATGGGGC 6895 28 92.9 33 ........T.....C............. CGGCTGTCTGAGCAACCACGGGACCTGTGCCAC 6834 28 96.4 33 ...................C........ GCGGAGCCGCGCCAGAGCGAGGTCTCCAACGTC 6773 28 92.9 33 A....T...................... GCTCACCACCGACCTGTCCCTCCCCGCGCCCGG 6712 28 89.3 33 A..........A............C... GGAGTCGGGCGCTGGATCGGACAAGGCCATGAC 6651 28 92.9 33 ..............C........A.... CCCCCGTGGGACATGGCGTATGTCCACCTGGAG 6590 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 94.6 33 GTCGGCCCCGCGCCTGCGGGGATGGTCC # Left flank : GCCCTCGGCCGATCCCGGGGCGGGCTGACCACCAAGCTCCATCTGATCACCGAAGCCCGTGGCCTGCCGCTTGCCCTGCACCTGACCGGCGGCAACATCAACGACTGCACCGCCTTCGAAGCGGTGATGGGCACCTTCCGGCTGCGCCGTCGCATCGGCCGTCCCCGTACCCGGCCGGACCGGCTGGTGGCGGATAAGGGCTACTCCTTTCGGAAGATCCGCCTGCATCTGCGGCGGCGCGGCATCGGCGCGGTCATCCCTGAGCGGTCCGATCAGATCGCCGCCCGCAAGCGCAAGGGCAGCCGCGGAGGCCGCCCGCCCGCCTTCGATGCCGCGGCCTACAAGGGGCGTAACGTGGTGGAGCGGTGCTTTGCCAAGCTCAAGCAGTGGCGAGCCGTCGCCACCCGCTACGACAAGCTCGCCGGCCGCTACCTCGCGGGCGTCACCATCGCTTCCCTGCTGCTCTGGCTCCGCCACGCCGAATTATCAGACACGCCTTA # Right flank : CGGTTGCGTCCACGGAGGTGGTGTATGAGTTTCCCCAGCTAGCGGGCGTGGCGTCGTGAAATGAGGACGGCCATCGCGTGATCCTTCGTGATTGCGACATCAAGATCGAAGGAGAGAAGCGATGGCCGCGACCAACAGTGTGGACCCTGCCGCATGGCTGGCTCAGCAGATCGAGCACGGCGATCCGGATCTGTTGCGATCCATGGTGAAGACCATGGCCGAGGCGTTGATGTCGGCCGAGGCCGACGGCCTGTGCGGTGCCGACTACGGCACCCGCAGCGAGGAGCGCACCAATCGACGCAACGGTTATCGATCCCGGGACTGGGACATCCGCGCGGGCACCGTTGAACTCGCCATCCCCAAACTGCGCTCGGGAAGCTACTTTCCCGACTGGCTGCTGCAGCGCCGTCGGCGGGCCGAGCAAGCCCTGATCAGCGTGGTGGCCACCAGCTACCTGCTCGGGGTCTCCACCCGCCGCATCGACAAACTCGTCGAGCAGC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 12732-8657 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCO010000004.1 Streptosporangium sandarakinum strain DSM 45763 Ga0415185_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================== ================== 12731 28 92.9 33 ...........A..C............. CACGGTGTCGTCGACCCCGTCGAGGTTCGCGCA 12670 28 96.4 33 ..............C............. GCACATCCTTCCCTCGGCGATCGGCCGGCGCTC 12609 28 92.9 33 ..............CA............ GTAGTCCCAGAGCGTGACGGACTCCGGCAGCCC 12548 28 89.3 33 ............GAC............. CGGCCCCCGGAATGCACCCCGGAGGGCGTGAGT 12487 28 89.3 33 ..............C..A.....A.... TCTTCCGGCTGGACGGGGATGACCACGCCGCCG 12426 28 85.7 33 ...........A..C.....A....C.. CTACCACTACTGGACTTCCTACGTCGGCTCCGG 12365 28 89.3 32 ..T........A..C............. TAGCCTGACGTGGCCTGGTGCAGGCGCCGCTC 12305 28 92.9 33 ..........T...C............. CCTGGTGGACCGCTACGGCGGCGCGGTGATGGA 12244 28 89.3 33 ...........A..CA............ CCGCGGCGCCTGTTCCTGGCCGGAGTCGTGGTC 12183 28 85.7 33 A......T...A..C............. CCGGGGTGTACTGGCCAAGACCCTGGCCGGGGT 12122 27 96.4 33 ....................-....... CGTCCTGCGCAGCACCCTCATGGACTGGCATCG 12062 27 89.3 33 ....-..........A........A... GCGCTTCTTGGCGGCCTTGTACGCCTTATGGGA 12002 28 92.9 33 .C..A....................... GTAGAACCGCCGCTCTGGGCAGCGTTGGAGTTT 11941 26 89.3 33 ...........--.C............. CAGCCTGTCCCGCCAGGTGCCCGGCCTCATCCC 11882 28 92.9 33 ............T............C.. GTGGGCCAGCAGCACCAGCTCGATCTGGCTGTA 11821 28 78.6 33 ..T..A.....AT...T........C.. CATGTACCGGATCAGCGCGTATGCGCTCTCCAG G [11800] 11759 28 96.4 33 ..............C............. GCAGTCGGCGGTGCGGGTCGGCATGTACGTCCA 11698 28 92.9 32 ..............C..........C.. CGATTCCTCCTCGCCCGGCCCGCCTCCCTCGC A [11674] 11637 28 92.9 33 ..............C..A.......... TCCCGCTTCTTCCTTGACCTCGCGCACGATTGC 11576 28 100.0 33 ............................ GCGGCGGATGCTGGTGGCGTTGACGCGCCAGAC 11515 28 89.3 33 ..............C.G..A........ GCATGGACATCATTTCATTGGTCATGACCGGCG 11454 28 96.4 33 ..............C............. TGCGACGTCGACGCCGTAGTCCGTCAAGCGGTC 11393 27 85.7 33 ..T....T.A.-................ CATGTCGCGCCGAGTCGCCAGCGCGGCGATCAT 11333 28 92.9 33 ...........A..C............. GGTGTCTGATCACAGACAGCAAGAAGCCCCGCC 11272 28 92.9 33 ...........A..C............. GTGAGGTCCCCATGACGCTCCTTACGCACGACC 11211 28 89.3 33 ...A........T.C............. CCAGGGCATCTACGTCTGGGAAATCCTGGACCG 11150 28 96.4 33 ..........T................. GCTCACCCAAGAGCTCGCCCGCCGGTTCACCGT 11089 28 100.0 33 ............................ GGGATCGACGGCGCGCGGGAGGTCGTGGCCGCC 11028 28 100.0 33 ............................ CCAGTAGGCCAGGCAGCCGAACGCCGCCATGCT 10967 28 96.4 33 ..............C............. CGACTTGATCGCGGCACGCTCTGATGTCTTCTA 10906 28 92.9 33 ..............CA............ CAGGTGCAGGTCAAGGTTGTAGCAGGCGTAGCG 10845 28 92.9 33 .............TC............. GCCGATGTGCTTGCACTGCTCCTCGATGGCCTG 10784 28 85.7 33 .A....T.....T.C............. CCAGGGAGCGTGGAACGACTGGGCGGTGTGCGG 10723 28 89.3 33 ...........AT.C............. AGGTAGGCGCGTGAGACGAACCACCTTGGCCGT 10662 28 96.4 33 ..............C............. CTTGAACTTGGCGGTCAGGGTGCCGACGACCGT 10601 28 100.0 33 ............................ GTGGGGCGAGGCGTACAACCCGTCCCTGGAGTC 10540 28 96.4 33 ......T..................... CTCCTCGACCTGGTCCCCGCCCAGCCCTGCAGG 10479 28 92.9 33 .....T........C............. GGCCATCGAACGCGCTGAGAAGTACTCCGGTGT 10418 28 85.7 33 ............GAC.........A... CGGATTGGGAAGTCGCATCGCACATAACCACCT 10357 28 82.1 58 .CT.........GGC............. ACCCCGTCACGGACCATCCGGTACAGGCGGTCGTCGGCCCCCTCACCGGCCAGGTGAT T [10331] 10270 28 89.3 33 A.......................A..T CTACCCCGAGGCCATGCTCAAGGCCCACGCCGT 10209 28 96.4 33 ...................A........ GCTGCGCCTCGATCTGCTGGCACAGCGTCGGCG 10148 28 89.3 33 A..........A..C............. CCCGGCCGCGCTGGCTCCCGCCGTACCGGCCGC 10087 28 92.9 33 ...........A..C............. CCTCGCCGTCTGATCGCCCGGCCCGGCGCCCCT 10026 28 92.9 33 ...........A..C............. CTGGATCGGCGTCGCCACCGGTGACACCGCCTC 9965 28 89.3 33 ........T..A..C............. CCTGGAGGAGGGCAAGGCCATGCTGGCCTCGGC 9904 28 92.9 33 ...........A..C............. GCAGACCGCAGCGGTCGTCACCACGGCACCGAT 9843 28 92.9 33 ...........A..C............. CCATGGTCGGACCTCCAGTGTCCGGTCTAGGCC 9782 28 92.9 33 ...........A..G............. CCGTCCCGGCGTAGCCCAACGTCACATGCTCGG 9721 28 92.9 33 ...........A..C............. GTCCTCCGCCGCCTTGGCGAGGTCCTCCAGCAG 9660 28 89.3 33 ...........A..C.T........... CAGATTGTGCAGGTTTATTTGGTGGCTTCTCGC 9599 28 89.3 33 ....A......A..C............. GGAGCTGACTCGCCTTCGGCGGATCTTGAGGCG 9538 28 92.9 33 ..............C.........C... CACACCGATCGAGTACGCCGCCAACGTCTGGAC 9477 28 89.3 33 ...A.........TC............. CGTGATGCGGATCGCCACACCGGCCGACCGCGC 9416 28 100.0 33 ............................ GGACGACTGGATCATCCGCGGGGTCCTCGGCGA 9355 28 100.0 33 ............................ GGTAGCCGATCACCTGACCGTGAGCGCTGAGGA 9294 28 100.0 33 ............................ CGTCGCCCGCGCCGCCATCACCGCCCAGACCGA 9233 28 100.0 33 ............................ CATCTCTTCTGCTCCTTCCGTAGGCGGCGCCGG 9172 28 100.0 33 ............................ GGACATTCACCGCGCCGTGTGGGCCGGGAGCCC 9111 28 100.0 33 ............................ CCCGGCCCCGATCCTCGCGGCGGCCGTCGCACG 9050 28 100.0 33 ............................ GTGGGGAGACGACGACTGGGGTTACCGGCGCCG 8989 28 100.0 33 ............................ ATGTGCGCGGGGTCGGCCCGGACACGGGAACCG 8928 28 92.9 33 ........T.....C............. CTTCTCGGTCCGGTTGGCCTCGGCCTCGGGCGC 8867 28 92.9 33 ...........A..C............. GCTGTTCCGCACCGAGGCGCTGTTGCTCGGTCT 8806 28 89.3 33 ...........A..C....A........ TGGGTTCGGCCAGCTCATGGAGGACGCATTTGG 8745 28 92.9 33 ...........A..C............. GGAGGGCGAGGTCACGTTGCTGCGCTGGTCGTC 8684 28 92.9 0 ...........A..C............. | ========== ====== ====== ====== ============================ ========================================================== ================== 67 28 92.9 33 GTCGGCCCCGCGCCTGCGGGGATGGTCC # Left flank : CGCCCTCGTCGTCCACGCTCTGAAACGCGGGTGTGGCCTTGCCGCAGTCATGTATCCCGCACAGCCAAGCGAAGAACAACCGTCCCCGGCCTCCGGAGGTGTCGTCCAACCACTTCTTGGTCGACGGTGGAAGATAGTGATCCCAGATCTCCTCAGCTACGGCTGCGGTGTCCAATAAGTGCGATAAGAGAAGGTTTGTCCTACCGCCTGCTTTCTTTCGAGACTTACCCCACAGAGCCCCTATCTTGAGGGCAAGATCCGGTTCGATTCCAAAGTTTTCGTGCCAGTCCGCAGACATCCACCCCTCCTGCTTCAGGGCGGACCGTATAGGTTGCGACCGACAAAATACTGCCCAAGCTATCCTGAATATCGTTCATCTTCTGAACGGATCCGTTACGTAGATCATTTTGAGAGAGGCGCGGCTGACAATGAAGTATGGATGCCGCGGTCAACTAAAGGATCTGGCGGCCTCCCGCCTATAATTCCGCAGGTCAGCAAGT # Right flank : CGTCCGGCGCGTAGCCACGCCCCCCGTTGCCTAAGGCGTGTCTGATAAATGATCTCGGTGGTGCGGTTAGATGATTCCTCGTGGTGCGACGAGGTGAGCTGACCGACAAGGCCTGGCAGCGGATCGAGCCCCTGCTGCCCGCCAAGGATGGCAGGGGACGGCCCTGGCGGGATCACCGCGCGGTCATCAACGGGATCTTGTGGAGGTTGCGGACCGGAGCGCCCTGGCGCGACGTACCGGAGCGCTACGGTCCCTGGCAGACCTGCTACGAGCGGTTCAAACGCTGGGAGGAAGACGGCACCTGGACCCGCCTGCTGGAGGAGATGCAGGTCAAAGACGACTCCCTCGGTGCGGTGGAGCTGGTCGTCAGCGTCGACTCCACCATCGCCCGAGCCCACCAGCACGCTGCCGGCGCCCGAAAAAGGGGGACGGCGGAGGGACGATCGACGCGAAAGCCTCCCAAAGACGACAAGCCCTCGGCCGATCCCGGGGCGGGCTGA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [25-58] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 21191-21950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCCO010000004.1 Streptosporangium sandarakinum strain DSM 45763 Ga0415185_04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 21191 29 96.6 32 ...........A................. TTTGCCGAGGATATGGAGGGTGGCTACCCCGA 21252 29 96.6 32 ...........A................. CCGTGCTCCGCCTCGTGCAGAGCGGCAGCCCT 21313 29 89.7 32 ...........A.......A........T CGCCCCCCGTGCAGTGCTCTTACCGGCGCCTG 21374 29 89.7 32 ...........A...........A....T CTTCTCCTATCTTGACTACCCGTATGCCCGAT 21435 29 89.7 32 ...........A.T..............C CTGGGGGAGCTCCCGGAGCCCCTGCACGACGA 21496 29 93.1 32 ...................A........C TCGTCAGCGGCCACGCTGACGGAGGTGTAGGC 21557 29 89.7 32 ..............G..........C..T GTGCGGTCGCTGGACGGACAGGCGCTGTTCAA 21618 29 100.0 32 ............................. CTATCACGGCCCGGGGCCGGGTCTCTACCAAC 21679 29 96.6 32 .............T............... GAGCACAGGACCCATGACCATGTCCCCCGAGT 21740 29 100.0 33 ............................. GAGCTGGGCCGCACCGGCAGGTCGGTGGGCATC 21802 28 89.7 32 A.............-.............T GCGGCCCTGGCGGTCATCCAGTGGAGGTCCTC 21862 29 89.7 32 ...................A....A...C GCGACAAGGCGATCGGCTGTCTCCACCGGGTC 21923 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 93.7 32 GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Left flank : AGAACACTTCCAACCCGATCAAGCCCAGCGAGATCCAGGCCAAGCAGACGGCTGACGGCAGGCAGCGCTCCTACCGCATCGGCCACCGCACCGCGGCCCAGCAGCTCACCTGGTTCCTCACCCGGACCGAGCGTTGGGGGTTCGACGTTCCCGAGGCCCGCACCGACCCCCCAGCGCGTGGCCTGGAGCCCGAAGAGGGTCCTGACGTCCCGTCGGCACGCGAGGTTCGGATCACTGCCCGCAACCGCCTTTCCTTCAAGAAGAGAGGCGACGATAAGAAGCCCGTCATTCTGCACACCGCGACCTTCGAGGGGCGGCTCCGCATCACCGATCCGGTGGTGTTCACTGAACGACTGCTGGGCGGTATCGGCCCGGCCAAGTCCTACGGTTGCGGCCTGCTCACCCTCGCCCCGCTCCAGGCTCACACTCTGAACGGGCACAGGGCCACGGGGAACAGGTGATGGTCCGAGGAGGAGAGCACCCCGCGCCGCGGGTGCCGC # Right flank : GGTGTTCAGGCGGGTGGCGAGGCGGACTATCTCCTGCTGGTCGCCGCGGCAGCCGGGGTGTAGTGCCGCGGAGTGGCGGACGGGTGTGCGGGTGCAGGCGTGGCCATGGGTGGCGTCTCCTCACGTCCAGCGGGTCACGGTCGCGGGCAAGGATGCAGGGGACCGATAGTTAGTGCCTGGTCTCGCTCGAGGTGGGGCTTCAAAATATGGGGCACCGACGAAGGAGTGCCCTTGCCCGGTCCCCGTGATTACACGAGAGGCACCAGGGCCGCCCTGGTCTATCTGAGCGGCGGCCTGTGTTACTGGCCTGGATGCCCTGAGCCTGTCCTACGGAAGGTGGAGGGCGGGTGGAAGTTGATCGTCGACTACGCGCATATCCGGGCCGCGGAGATCGGAGGACCTCGCTATGACGCGCGCATGACTGATGACGAGCGGCGGGACGTCTCCAACATCATGCTGTTCTGTCCTCCGCATCACGACATGGTCGACGATCGACCTGA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //