Array 1 233-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXH01000025.1 Thermodesulfatator atlanticus DSM 21156 H528DRAFT_scaffold00025.25_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 232 30 100.0 36 .............................. AAGGCTACCCGAAAACAAAAAGGGGTTGCTCCAGAT 166 30 100.0 35 .............................. AAGAGCGTTATACAAAAATCATAGGGGGTGTAAAT 101 30 100.0 36 .............................. TATAATTGATTATTTTCTTGCAATCTTAAGAGTAAC 35 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTTTGCAGCCTAACTAAAAGGAATGGAAAC # Left flank : ATTTTCATTTGACAAGCTATCATACGGGGCAATGAAGTCGTGTATATTGCTTTACTTTGCCCTTATAACCGTTATTGCGAACATTTGTTGCAAATCATTCTAATAGGTCAAAGACCTTTGCAAAATTGTTAAGATCTATGTTGCAAGCACAACCGCAAGGGATCCGTTCCCGTTTTTCGGAACGAAAAATAGGAACGGATCCTTGATCAGGGAACTGGTATTGCGAGCGCCTTTTTGCATGTCATTAGAATCTTCAGCCTACAAAAAATTGCGGTGAGAAGAAAAAACTCTTCTTCCTTTTCCCTGCTATTTTGATCTTTCAAACAGTAGTCTAAAACAGTCACAGTTTATACCCCCTTCTGTGAAATTTTTCACCGCCGTCGGACCCCCAGGGGTTTTTGCACTACTTGAGGTCCAGCGGCAAAAAAGGCCTTTTCCAGTGATTTGACTTTTCCGAAAAGCCTTGATATAAAAGACAAAACCGGTTCTTTGAAATATGG # Right flank : CTTGGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAGCCTAACTAAAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 29505-29326 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXH01000029.1 Thermodesulfatator atlanticus DSM 21156 H528DRAFT_scaffold00029.29_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 29504 33 100.0 41 ................................. AACATATGATCTCACTATAGGTCCAACACCACAACAGTCAC 29430 33 100.0 39 ................................. AACCCAGTTTTTCCAGGCCGCTGATTGTAGGAGTAGAAA 29358 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ========================================= ================== 3 33 100.0 40 GTTACCCACCCTTAAATTCCCGTAGGGAGTGGA # Left flank : AGATGGCAGAATATTTGCTATAGCAAATTTAGATCTTTGACAATTTTTGGTCCAAGAAAACGGCATAAATTCAATATTTTGTGGTGGGAGGGGTGGGGTAGCACAAAATGCAT # Right flank : TTTTAGGCGAAGGGCGAAGGGCCGAGGGAGAAGGGCAAACGTAGGGGCGACGCATGCGTCGCCCTTACAGCTTATCCAGCTATGAATTTCCTTAGAAAATGAAACTTTTATGCCCGACGTGGACTTTTTGTGAGTAGAAATGCCATAGAAAGTTCAGCAAAAAGGGGAAAGCTCTTCCCAGAGGATGGGCTGGGTGCCAACCTTGCCCACCACAATGCCAGCGGCTTTGTTGGCAAGCATGATTACCCTTTCGATAGGATAGCCTGCCGCATAAAAGGCGGTTAGCGTGGCGATTACCGTGTCTCCTGCCCCTGACACGTCGTAAACCTCACGGGCCTGGGCAGGAAAACGCCTTTTGATTTCAGGGTGGTGTAAGTACATGCCTTCTGGCCCGAGGGTCACCAGCATGAAAGAAAAATCATATTTGCGAATCAAATGTTCGCACACTTTGGGCATGTCCGCCTGATAAAGTCCCTCTTCTTTGGCGATTTCTTTTAGTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCCACCCTTAAATTCCCGTAGGGAGTGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8-169 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXH01000039.1 Thermodesulfatator atlanticus DSM 21156 H528DRAFT_scaffold00039.39_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8 30 100.0 35 .............................. TAATAAATAGAATTGTCAATAGTAACAGCCTGCAC 73 30 100.0 37 .............................. GATAGACCTGTAAAACGTCGTTCTCTCCCTGATCAAC 140 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ===================================== ================== 3 30 98.9 36 GTTTGCAGCCTAACTAAAAGGAATGGAAAC # Left flank : CGTAATTG # Right flank : CCGTCCCAGATGCCCGGGAGGCATGGGAGAAGGCCGTTTCGCTTGCGGAAAGGCACGTGGAAAAACTTTCGCGCGAGGGAACTTATTACGCCAGCAAAAGGCTTATCGCCGAGATGAAAAAGGCCATAGAGGCCGGAAGGGAGGACCTTCTCGTGCGGGCTATCAACTGGTGGCTCTACGACAGGCAGCTATACTTTTTAAAGCGCGTGGCCCGCACAGAGGCGGCCAATGCCTTTCATCTGGCGCAAATCAAGGCTACCGAAGACGACCCGTACGTGATCGGCTACCAGTGGCGACTTTCAAGCAGCCATCCGCGGCCTGATATCTGCGATTGGTATGCCAGCGTGGATTTCGGGCTGGGAAAAGGCGTGTGGCCCAAAGACCGGGTGCCGCGGAAAAAGGCTCACCCACACTGCATGTGCTACCTGCTTCCCAGGGTTTCGAAGGTAAAGACTCCAAGAGTCAAGAACTTCGCAGAACTGTGGGAGAATCTTTCGCCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAGCCTAACTAAAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 13-380 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXH01000051.1 Thermodesulfatator atlanticus DSM 21156 H528DRAFT_scaffold00051.51_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13 30 100.0 39 .............................. GGAACCGTTTACCTTAACATATAAACGTATCCCAGGCGT 82 30 100.0 38 .............................. TAAGCCAATCGGGTCACGGTAAGGGTAAAGGACACAGC 150 30 96.7 36 ........T..................... GTAGGCCTTCCAGTCCTCGGCCTCGGAGGTGGGGTC 216 30 100.0 38 .............................. TGCTTCTTTGGGTAGTATTTACCACACCTTCAATGATT 284 30 100.0 37 .............................. GGATGAGTTTGCCTTCATCTCTTTTCAAAACCAGGCG 351 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 99.5 38 GTTTGCAGCCTAACTAAAAGGAATGGAAAC # Left flank : TAGTGAATTATTG # Right flank : CATATTTCTTGTGAATCAAAAATAGTACATACCTAATAAGGAGGTTAAGGTCTGGGAGAGAAATGAAATTCAACTCTTGATGTTTTCCGCCTTTGACGCCATCCTTAATAATAAAGATGTCCGAAAAGGAGGGCCTTATGGGAGACATTTTTAGCAAGTTCGGTCGAGTTTTCAGAGTCTATGAGGACAAGGGTAAAACAAACATTTTAGATGGCTTTACTTCAGATGATTTGGAAAAGGGCGGCCAACATGGTCATACAGTTATAAATAATGATATTGACATCAGAGCCGAAGATGGTGGATTTGACGCAAGTAAGGTCTGGAAGTCAATTGAGTATTGCAGAGACATAGAAGGCAATAGAATCAAAATAAAGAAATGGTAAGGTGCGAGAGCCTTTTAAAAAGGGTTTCCGCTTTTTTGCCAGAGTGTGAAACGTATAAGACAGAGAAAAACCTCTAGATTTGTATAGTTGTTTTTGTTTGTTGATACCGCAGATTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCAGCCTAACTAAAAGGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 103563-103716 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATXH01000006.1 Thermodesulfatator atlanticus DSM 21156 H528DRAFT_scaffold00006.6_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================ ================== 103563 23 100.0 41 ....................... GCAAACTTTCAAATAAACATCGCCAATCTTTATATTTGCCT 103627 23 100.0 44 ....................... TGCAAACAACTTCAGTGCATTCAGAATCATTGCAACCACCACAA 103694 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================ ================== 3 23 100.0 43 GTTTCCATTCCTTTTAGTTAGGC # Left flank : TTAGGCTGCAAACCCGAACATATTTCTACAACTGTCCCACAGTAGGGACACCTGCAGAAGGGTTTTTCCCTTTCAACCCAAAAAATTCCTTCGCATTCGCCGCACTGCACACGATACATACGTGCGGCTTGAGAAAGAATTTCGTCTATGTAGGCACTAAGAATAGTGCCACAATCTTCTGCCCGCTTTTTGAGGAACTCTAAGGTTTTTTCGTCTATGCGGGCATAGACTTTTTTGCGAGGACCTGTCCCTTCTTCTTCCCATAGAGGGGCAGGTTCAATTAGATGGACTAAAGACACTCCAAGGGTGCGGGCAATTTTTTCCATGGTGGCAAGCGTGCGGCCACCAGGGTCGGAAATGGCAAGCTCGAGTGTGCGCTTGGCTATGCCAGCCTGCTTGGCAAGCTTTTCATAAGTGAGTTCTCTTCTTTGCATGAGTTTTTTGATTTTTGCTCCAATATGGTCCATTATAGAGCCTCCTTTTATTCGCTACTTTCCTAC # Right flank : TGCAAACTCCT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCCTTTTAGTTAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //