Array 1 786-1744 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXLN01000012.1 Helicobacter sp. MIT 01-3238 H_sp._Monkey_taxa_3_01-3238_12_6888029.0063, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 786 36 100.0 30 .................................... TACATTATGGCTCGTAAGCGTGGGAGATTT 852 36 100.0 30 .................................... AAGTAGGGTATGCTTCTTCTACTCCACCAG 918 36 100.0 30 .................................... CCCTGTGGTCGTTGTATTTGCTGTCGTGTG 984 36 100.0 30 .................................... AATCTCAAGGTTTAGGTAAATCTGTCCTCA 1050 36 100.0 30 .................................... AAAGAGCTTTATCCTTAAGGAAGCGAGAAA 1116 36 100.0 30 .................................... TAAGCCAGCGTTTTGGTCGACCTGTTGCAA 1182 36 100.0 30 .................................... TACTTGCGTAGATGATTCTCCCGCGCGAAT 1248 36 100.0 30 .................................... TTGCTTGTGTTTAAATGAGTTAGGAAATTT 1314 36 100.0 30 .................................... CGCGAAATGCTACTCTTGGTAACACTTACA 1380 36 100.0 30 .................................... CAATGTAACGCTTAAATTAAATAGCAACTA 1446 36 100.0 30 .................................... AGAGACAAAATGAGGGTAACACATCAAGTC 1512 36 100.0 30 .................................... CAAAAAAATTATATTAAATGAAGCGAGGTG 1578 36 100.0 30 .................................... TAGGGCGATTATCCTCTATGCCTTGATTTT 1644 36 100.0 29 .................................... GCATCATGAGTTTTTTTACCAGGCTCTGT 1709 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGCCGCTTGTTAAATTCTCTTATGGTAAAAT # Left flank : GAGGAGGCTTTTGTCCTCCTCACTCACAAAGTAGCAAGCGCACTTACTCTAAGGGAGGGGGTTTCAAGAAGTTTCCCTGTAAATAAAACTATTTGTCATACTGAGGGCGTAGCCCGAAGTATCTCAAGGAATATCTCAAAAGATTCTGCAAACAACACAAAACAAAAAAAGAGATATTTTGCTTGTCTCAATATGACAACGCATAAAAGCGTGGATTACTAAAGAAACTGCACTTCGTTCGTTTTGCCACACCCATTTCATTTGCTCGCAATGACGAAAATCGCCATTTAAGCATTAGCAAAATATTTCAAAATCTCTCTTAAGCCGAAATGCTCTTAAGCAAAACTTCAGCTTCATTTTTTAGTCCAATTTTATACCAAATCCATTCCTAAAATCTTACCAAGCTAACAAAATACATCCACCAAAAATCACAAAAACAGCAGTTTTTGCAAAAACACGATTCCCAAACCCACGCAAAATACACACTTACACAGCAATTG # Right flank : TATCCTGTGAGAATATATCGATTTTATCGGCATTTGAGAGTTTTTGACAGCCCAAAATCCCCATAAAATCGAGATAATCAAGCATAGAGAGTCTAACAAGCGGCTAAAATAAGGGAAGCAGGAAATCCCGCAGGGTCCCGCAAGGGGTAAAACGCAATGAATGGATTGTGTTGAGCTAATCCCTAAACCTGCCCGTTTTTTTGATTCTACTTTTTACCTTACACATACTTAAAGCATAACCACACTTAGATACACCTACTCAGCCTACCTCACCCACTTCCAAAGTCATATCACTTCACACAATGCCTTTTAATATTTTTGTCAAGCAAAATTTGCTGATAAAAGATATTCCCCCAAATACTTAAAAAGCAATAAAGAGATATTTCGCTAATGCTCAATATGACAAGGACAGCCAATCACAAGGTGGCAATGATAATACAGCAATAAAGACAGCAACGATAAAGCGACAAATGACAAATAGCGATAATCTCTAACCATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCCGCTTGTTAAATTCTCTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 41668-41236 **** Predicted by CRISPRDetect 2.4 *** >NZ_NXLN01000007.1 Helicobacter sp. MIT 01-3238 H_sp._Monkey_taxa_3_01-3238_7_9351925.862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 41667 36 100.0 30 .................................... GGTGATACATCATCTTTGAGAGCTGTTAAA 41601 36 100.0 30 .................................... GTAATGATATCAAATTTTCTTAGCCCTAAT 41535 36 100.0 31 .................................... AGCCTTTTGATTTACCATTAGAAAATACCAT 41468 36 100.0 30 .................................... CGTGCGCGAGCACCCATAAATGTCCATCTT 41402 36 100.0 29 .................................... TTCCACAGCTTGATATCAGCCTTGGAGTA 41337 36 100.0 30 .................................... ATATCTTTATCATTGGTGCAATAAGCTTCA 41271 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 100.0 30 CTTTGAGTATGACCTGATTTTACAAGGGACTAAAAC # Left flank : TACGAAACCTCAATATGACAGAGCAGGTGAGCTAAACACAAGCAGTTCCCCCCTCCCTTGCGAGTGAGGGCAAGCAAATTATTTCCCCCTCCTTTGCAGGTAGGCATAATGTAGTTTCCCCTCCCTCTGCGGAGTTGTCACTCTCTTTTCCCCCTCCCTTGCGGAGGGGGATTAAGGGGGTGGGTATTATATTCGCCATTTAAGCATTAGCAAAATATCTAAAAATCTTTCTCAAACCAAAATACCTCATTAAGCAAAACTTCAGCTTCATTTTTTAGTCCAATTTTTATCCAAAATTCCTTGCCAAAATCTTACCAAACCCACAAAATCCCCCCACCAAAAATCACAAAAACAGCAGTTTTTGCAAAAATACGATTGCCAAAACCCACGCAAAGCACGCGCTCTCACAGCGAATATATGCTTAAAATCGTTATTTTATGGGGATTTAAGGTTTTGATAGGTATAATACTGCCCTGCATTACGAAACTTCAAGGGAGAAT # Right flank : ACGCGAATAAGCCCCCTCCCTTTGCGGAGGGGGTTTGGGGGTGGGTTCTTTATCCCTTGAATCTCAAGCAAGGCTAATAACTGCTAGCAATGTAGATTTTCGTCATTGCGAGCGAGCTAAGTGAGCGTGGCAAAACAAGCGAAGCGCAGTTTCTTTAGAAAGCCTTTGGCTTCTTTAGTAAAACAAGCGAAGCGAAGTTTCTTTAGCAATCCACAAAAAGACATAGATTGCCACGATTTGACTTCGTCAAATCTCGCAATGACAAATAAAAGCGTGGATTGCTTCTTTGTGGCTTCACTACTGCTTAGCAATGACGGTGTAATAGATTGCCACGAGAATTCTTGCGGATTCTCTCGCAATGACGGATTTGCGGATTGTTTCGTTGTGTCTAAAGCCACTACCTCGCAATGACAATTAGCGCGTGGATTGCCACGAAAAACGAGCGTAGCGAAGTTTCTTTGAGCAATGACGAGTTTGACAAACTTTTGGATTGCCACGCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAGTATGACCTGATTTTACAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //