Array 1 733710-733236 **** Predicted by CRISPRDetect 2.4 *** >NC_007775.1 Synechococcus sp. JA-3-3Ab, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 733709 29 100.0 35 ............................. AACAAGTGGGCGCCCAAGCTGCGGGAGTTCACCGG 733645 29 100.0 35 ............................. GAAGCACAACTTGAGCGGGAAGCCCACCGAATAGC 733581 29 100.0 34 ............................. TAATCCTCTACGTTGGAGTGACGGACAAAGAGTC 733518 29 100.0 35 ............................. ACCTGGCTAGTCCCCGCAATAGCGGTGGCACTGGA 733454 29 100.0 35 ............................. CGAAGGCGGCAGGCTTGGAGATCGTGGGAGCGTAC 733390 29 100.0 34 ............................. AAGTCGGCCCGGCCCGCGGGACGGCAGGACTTCA 733327 29 100.0 34 ............................. AAGGGAGGGCCCTGACCCGGCAAGGGATCCGTCC 733264 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= =================================== ================== 8 29 99.6 35 GTTGTCCCCACACCCGTGGGGGTGAACCG # Left flank : TTGAGTCGAGAACTAGGCAACTGTGTCGAGAAAAGTTTGTAGAGCATCGGTTGATGCAGAGAATCATAGACGATGTTGATGCCATCCTCGGCTTCAGAGCCACACAGGAGGAGTCAAGCCCTGTAGGATCTCTTTGGGATAACGAGAAGGGAGCTGTTGAGGGGGGAGTGAGCTACGGAGAAGAGTTGGATGAGGAAATGTCGGTCTGATGGTGGTCTTTATCTTAGAGAATGTCCCCGCAAGTTTGAGAGGAGACCTAAGTCGCTGGCTGTTTGAGATCAAGGCGGGGGTCTTTGTCGGTCGCGTCTCAGCCCTGGTTCGAGAAGAACTGTGGGCACGGGTGACCAGCAAAATCGGCGACGGCTCTGCACTGATGGTCTATTCCACCAACTCAGAGCAGGGATTCTCGGCCAGGAGCATCGGGGATCCCTCGCGGCAGCTAGTAGACATAGAAGGGGTGCTGCTGGTCAAAACCTACTAAAATCGGCAAAAATGGAAGG # Right flank : ATCTATGAGCCCCCTGGTAGTTCTCCTGCTGTACGTTGTCCCCACATCTGTGGAAGCATGACTCTAGTCAATGATACGCTGGACTATACTGAAAATAATGTACAGTATGTTCAGTATGGCTGCTTGGTATGGCTAGGTATGTAAAACCGAGAGAAGCGGCGGATTATTTTGGGGTGTGTCTCCACACCTTGAGGCGATGGGAACAGAAAGGCTGGATCCATGCAGTACGTACACCATCCGGTAGGGCGAGAAGGTATGACCTCGACAGCTACATCAGAGCACCCAAGAAGGACAAACGAGTCGTTTTGTACGCCCGAGTTAGCAGTCGAGGGCAGAAACCAGACTTGGAAAGACAGATTGCAAGACTGGTTAACCTCTACCCTGGAGCCGAGGTGGTCGGAGAGATTGGCAGCAGTCTCGACTTCAAAAGACCAAAGTTCCTTGCCTTATTGGAACGAGTTCGTGCGGGAGATGTCGGAACAATTGTGGTCGCTCACCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACACCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGTCCCCACACGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 892335-889207 **** Predicted by CRISPRDetect 2.4 *** >NC_007775.1 Synechococcus sp. JA-3-3Ab, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 892334 37 100.0 38 ..................................... ACTGAATAAAATCCCCCTTGTGATACGGATTATAATAG 892259 37 100.0 36 ..................................... TTTGGAGCGCACTGCAACGGCGATCTGGGAGGTCTT 892186 37 100.0 36 ..................................... GCTTCTTTCTCGCCCTGCAGTAGCGAGAATTTCCAG 892113 37 100.0 40 ..................................... GTGATGGGGGGAACCCTCTAAGGTAGTCCCTCCCCCAACA 892036 37 100.0 36 ..................................... GCCTTTCGGCGTGTACTCTACGAAATTGGCCTTCGA 891963 37 100.0 41 ..................................... GTCTTGCGGAGCCCCGGCACCGTGGGCTATAATAAAACGGT 891885 37 100.0 39 ..................................... ATGAAGTTGAACCCACAGGCTGCAGCGATTGTGTCTCAC 891809 37 100.0 36 ..................................... TGTGTGGGTGGGGGAGGTTTATTCGTTGCTTAGCAA 891736 37 100.0 44 ..................................... TTCTCCACACGGGCTTGTTGTTCAGCCCGCTGCCGCTCAATGGC 891655 37 100.0 38 ..................................... CTTGAGTGTCTTTCCATTCATCGTATAGACTGACATTC 891580 37 100.0 41 ..................................... AGAACCCGCAGGCTTTCGCCTTTTGGATCCTGGTTTTCACT 891502 37 100.0 38 ..................................... GCCAGTTGATCACTGGACAACTTTAGGGCATTCTTAAC 891427 37 100.0 39 ..................................... GACCCAAAATGAGGTCATGTGGTTAATCAACAACATGGA 891351 37 100.0 38 ..................................... AATGACGGTGAACACCGGTTCCAGTAGTTGCATAACAA 891276 37 100.0 37 ..................................... AAGTTATTGTCGAACCACCCAAGTTGGTGGTTCGAAC 891202 37 100.0 39 ..................................... TGTTTTGCAAGTGCGGCTTTGTACTCGGTTTCTAGCCGA 891126 37 100.0 41 ..................................... GAAGGTTAGCTTGCGACCGCCAACACCGTCACTAGTCCACA 891048 37 100.0 42 ..................................... TAGCAGTGACGGATGTAGAGGTTTTTACTACCGTATAGGTAG 890969 37 100.0 36 ..................................... GTTCTACCTCACTTGTGATATCGAGATCTAGGTTAG 890896 37 100.0 37 ..................................... AGAACATATACTCGTTCGGGTCTTTAAAGATAAATTT 890822 37 100.0 36 ..................................... AGTGAGGGAAATCGGGGGTCGCAACTACTACTGGAA 890749 37 100.0 41 ..................................... CTGAGTTATATAAAACCTCTTGTCCCAACCCTCAGATTACT 890671 37 100.0 37 ..................................... TCACCAAGAAGGTTCCGGCAGTCAGGAGACGGCCCTC 890597 37 100.0 40 ..................................... TTTTGCAGATGATCTAGGCTAACCCAGTTTGGTTAGCCCC 890520 37 100.0 38 ..................................... GCATTAGTGAGGGAATTAACCCCGATCCAGCGATGGTT 890445 37 100.0 39 ..................................... CCTCCTAGGCAGTCTATACAAACTCTGCCCCTCTAAAAA 890369 37 100.0 40 ..................................... CTCTCAGTATGGCGGGCGCCTCCTTGAGGGAGAACCCGTT 890292 37 100.0 36 ..................................... TCCAACGCACCAAAAGCGGTGTCCGGTTTATCTACA 890219 37 100.0 34 ..................................... TGCGAAGTTTAACCATACCACGAAGGCCTTTGTT 890148 37 100.0 43 ..................................... TCTACGACTGTTTCCAGATCGTAGAACACGACATCTGTGCCCC 890068 37 100.0 38 ..................................... ACTCGGGTAGCCAAACCGGTTTCAGTCGGAATCCACCC 889993 37 100.0 39 ..................................... GCTTCAGAGTCTTGGCTTGTCCTTTGACAATTTTGTCCG 889917 37 100.0 38 ..................................... TGCCCTTTTACTTAGTCTAAGGAGTAAATACCTTTGCC 889842 37 100.0 38 ..................................... CAGTTAATGGTCCAGCGTCCACGTCCCCACTGGATCGT 889767 37 100.0 37 ..................................... AAAGTAAGGCTACTGTCGGGCACAACATGAAATCCGC 889693 37 100.0 36 ..................................... GTTAGGTTAGTTCAGGAGGCATGCCACTGCCCAGTC 889620 37 100.0 42 ..................................... TCTCCTGGTTCACAGTTAAACCCAGGTATTACTCTAGTTAGA 889541 37 100.0 39 ..................................... TTCACACATTTCTCGAATTTGCCGCCATCCTGCTCTACT 889465 37 100.0 38 ..................................... TGAACAGTATCTAGACTACGCTGCATACTTGGTTTATG 889390 37 100.0 38 ..................................... AGTTTTCATCACGCAATTCGTGTTCTACAGTGAGTAAC 889315 37 100.0 35 ..................................... TAGAGAGAAGCGAGTAATGAGCAAAGAGAAGTGAG 889243 37 70.3 0 .......T.......C....T.....A.C.T.CCTCT | ========== ====== ====== ====== ===================================== ============================================ ================== 42 37 99.3 38 GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : GGCCAAACGCCTGGAGCAGTGCTGCCAGCGAGTGCAATACTCCGTTTTTGAATGCCCCCTGGACACTGCCGAGCTGGAAGAGAAGCTGGAAAAGTCGTGGCTGCCTCTGCTCAACCTCCAGGAAGATAGCCTGCGGGCCTACCCTCTGGATGCCAGCGCCAAACAACGCACCAAGGTCTTCGGCGGGCCTCCCCCCTACGAGCCGCCGGACTACCTCATTTTTTGAGGTTCTCAGCTCGGCCAAAATTGTAAAGTTTTGTGCGCGATCCGTCGGGGCAAGCTATCGCTAGCCTTTCCTTACCGACGCCAGCCTTTAAGAGGAATCTAGTAGCTCTTGCCGGAATTGGCGCAACAATGCAGCATAACGTCTCTAAAAGAGCAAATTTCCCGACTTGCGCTTATCCGCCAAACCAATGTTAATATCTGTGTCGGGAAGTCTCCGTACTCCCTCGCAAGCGCACCTTGAAAACCTCATGAGTTCAGGCTTTTCCGGGGGTAGG # Right flank : AACCCCCAAAACCCTGAACTTTGCTGAATTTACTGAGCTTTAGGCGGTTTGGCAAAAGTCATTGAGAGGGATATAGTAGACCAAGTTTCCCCCTGATCCTTGAGTCCACCGCAACGGTTGCCGGGAAGTGAAGGGGGAAAGCGCTCGGGGGGTATTCCTCAGGGCTTTGCGGGATACCGCCTTCCTGCTCAGAGATAGGCAGGATGCGATCGCTTCTTTCCTGAACCATGTTCAGGAGAGTTCAGCGTGAATGTATCAGGCTCAACAAAGTACCTCAAGTCATCTAGGGAAGACTGCTCGACGAGTAGTCCTGGGATCCAGACTGGAGAGAGCGGCGGGCCAGCTTGGCATAGGTCTTCACCGTCTCGTAGGGCATCTCCAAATCAGCGGCGATCTGTTGTAAGCTCTCTCCACCTTCGCGGCGGGCCAGGATCGTCGCCCACAGTTGGGCAGTTTTTTCGGCGCGGGATCCCCCTTGTCGTTGCCGCTGGCTGAGAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCCTACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 1139963-1140602 **** Predicted by CRISPRDetect 2.4 *** >NC_007775.1 Synechococcus sp. JA-3-3Ab, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1139963 37 100.0 40 ..................................... CTGTGCAAGCAGCCATTCGGGGGTCCGTGCTCCGAGAGCT 1140040 37 100.0 38 ..................................... AACGGTTGGCTAATCCGGGAAACCGGATGGGAAATAGG 1140115 37 100.0 37 ..................................... CAAATCCAGAACCAGGTGCTTATAGCACTTGTAAAGG 1140189 37 100.0 37 ..................................... GGCGAAAGCCTGCGGATTCCGCTTGCTCCCCGCGTAC 1140263 37 100.0 39 ..................................... CTGTAATAAAACTCGGGAAGCGGCTCCGACTATACCGGG 1140339 37 97.3 38 .....G............................... TCGGGGCACCCCCTCTGGAAATGTAGATGCCAGTGTGG 1140414 37 100.0 39 ..................................... TCATCGACGACTAACTTTAAGGAAGGCTACCTTATTGGT 1140490 37 100.0 39 ..................................... TCATCGACGACTAACTTTAAGGAAGGCTACCTTATTGGT 1140566 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 99.7 38 GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Left flank : TGACGGCCTCAGCCTGGCCGAAGAGCCCTTCGACCGCAAGCCGCTAGAGGTCTCCCAAGATCTGGCCGCCCTGATGCAGCCGCCGGTTCCGCCCAACGAGCTGAGCCTGCCGGAGCTGGCGGAGCGCATCTCCCGCCTGGCCCGCTCCAACCTCAATACCCAGCCCCTGCGCACCGAGTTCCACATGCGCTTTTCCCTGCCCTTGGCCAGCTTTTTTGCCGTCTTGATCTCCCTTCCCCTGGGATCCACCACTGCGCGGCGGGTGGGCCGCTATGGGGGTGTCGTCTTCGGGATCCTGTTGGTGTTTGCCTACTACGTGGTGCTGAGTGTGTCTCGCAGCCTGGGCGAAGCAGGAGCCCTTCCCCCCTGGGCGGCAGCCTGGAGCTTCAACATCCTCTTCGGCGGCCTCGGCCTGCTGCTGTTGGCCCGCTTCCTGCGCTAGGGATCCCTTCTGGGCAGAGCAACCCCCGACCTAACCAGGGATCCACCGGATCCCTATA # Right flank : CCCTACCCCCGGAAAAGGCTGAATCCATAAGGTTTTCAAGGTGCGTTTGCGAGGGAGTACGGAGACTTCCCGAAACAGATATTAACACTGCTTCGCCGGATAAGCGCAAGTCGGGAAATTCGCTGTTTTGAGGGCATTATGTCACGTTTTTGGGTCAATTTGGGCAGGCAGTTCTAGATTCCTCTTAAAGCCTGGTGTTGCCAGGGGAAAGCTAACAACGGCTCGCCCCGACAGATTGCGCACAAAACTTTACAATTCCTGCCGCCCCCCGTCGGCCAGGGATCCCATCCCAGCGCTGGTCTGTCTAGACTGGAAGACAGCCCTATGGGGATCCCTATGCGCATTGGTGTGCCCAAAGAGATCAAGGAGCAGGAGTTTCGCGTTGGCCTGACGCCGGCGGCGGTGCGGGCTCTGACGGAGCAGGGGCACCAGGTGTGGGTGGAGACCCAAGCTGGCCAGGGGGCGGGCTTTAGCGACGAAGACTACCAAAAAGCGGGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTGCGGGGAAAAGGTAGGGATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 1260140-1260639 **** Predicted by CRISPRDetect 2.4 *** >NC_007775.1 Synechococcus sp. JA-3-3Ab, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 1260140 36 100.0 36 .................................... TATAACGCTCGGCAGATCGCTGGGCGTTGAGAGCCA 1260212 36 100.0 41 .................................... GCAATCGGGCGAGCGTTTGGATAGTCGGCAACTTCGCTGTA 1260289 36 100.0 43 .................................... TTTGCCGGTAGCTTTGGACTCATGGTTTCCTCCTTTCTGTAGG 1260368 36 100.0 38 .................................... TTTAGCCATCCATCGTATTCCTCAGGAATACTAGGGCG 1260442 36 97.2 41 .....................T.............. CTCAACGATGGCATAACGGAGCTCATAGTAATCTCCGCAAT 1260519 36 100.0 50 .................................... GCCCAGGGAGTTTAAGAACTCCCGGGCTTGCTTTAGCCACGCGTCCTCAA 1260605 35 77.8 0 ...........C..............T.-G..TGTA | ========== ====== ====== ====== ==================================== ================================================== ================== 7 36 96.4 42 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : GGCTGCTGTTCGAGGCTGGCCTCAACGATTGCTATCTGTTTGCGCAATTAAAAGATGAAAAGCTGCGGGCGGAGGCAGAAGGCTTTGCCCAGCGACAACGCCAAGCCCAAGGGATCCATTTCCTTGCCATCCAGAGCGATTTCCGGGCCCAGTCCTTCGCCGGCTTTTGGCTGATGCAGTACCCTCTCTAGAACAGTTGTCGGCCTGTCTGCCCCGCCACTCGCTCCGCCCCAGTTGCCTGGGCAGCCCGCAAACCCTTGCGTGAATCCTCAGGCTAGCTATGTTTGCGAGGCAACACAAAAATGGTATCAACGCCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCTGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCCACCTTCGACCGACCCCCTCGCAAATAGGCCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGA # Right flank : AGGTTGGCCAAGTAAGCGGCTCCCTCTTCCTTGGGGGGAAACTAGCAGCGGGGATCCCCAGGTGTTGAACATGCGCTTTGCGTTTTGCCGATACCGGCGGCCTTTCCGCCAGCCCTTGCGCACGCGCTACGGCCTGTGGTCTATCCGCGAAGGGATCCTGGTTCGGCTGACGGACGCGGAGACGGGAGGTCAGGGCTATGGGGAGATTGCCCCCATCCCCTGGTTGGGCAGCGAGACCGTAGAGGAAGCGCTGGCATTTTGTCAGCAGTTGCCCCCTGAGCTGTCGGAAGCAGAGATCGAGAAGATCCCGGCAACCTTGCCCGCCACGCGCTTTGGGCTGGAATGCGCCTGGCTGGCCTGTCGGGATCCCGGCTGGCTGGCAAGGGATCTCTCCGGGCTTTCCTGGTGTGGGCTTTTTGGGAAAACCCCACCCTCAGGTTCCTACCCCGCCTACAAGGTCAAGGTGGGGGTGGAGCCTCTCGAGCAGGAGGTGAAAAAGC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 2329202-2327972 **** Predicted by CRISPRDetect 2.4 *** >NC_007775.1 Synechococcus sp. JA-3-3Ab, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 2329201 36 100.0 39 .................................... ATTGAGGAGCTACCAAGCCTTCTACCATATCAGCAGGAT 2329126 36 100.0 40 .................................... CTCTTCTTGAAGTGCGGGATGTATATGTACTGGACGGTAA 2329050 36 100.0 35 .................................... CTGAGTCCTTGGTTTATTCGTGGCGGCCGTGTCGA 2328979 36 100.0 43 .................................... TATTAGTGCGAAAAATAGGATGCTGCTCTGTCTTATACTTAAT 2328900 36 100.0 40 .................................... GTAAAGACTGTTAGTAACCAGTCGCTTGCGAACGAATCGG 2328824 36 100.0 35 .................................... TGTAGTACAGGGGTGTGTGGGTGATCCCGCCAGAA 2328753 36 100.0 38 .................................... GGCAGGATGTAGCCCAGTCAGGACTGGGTATACCATCA 2328679 36 100.0 37 .................................... AATCTTGAATGTGTTCATACGGACTCCTTTGTTTAGA 2328606 36 100.0 38 .................................... CGCTCACGCTTTTGCGCTTTGCGCAGCTCAGTAATGCT 2328532 36 100.0 40 .................................... TGTAAACATCTGCTCTAGTTAAGGAAGTTGTTAAAAAAGG 2328456 36 100.0 37 .................................... AGTAGAAGCGCTTACCGCCTACATCCCGCACTATGAG 2328383 36 100.0 37 .................................... GCTCCGAAATGTACCACCCACCGTATGCCCAGATACA 2328310 36 100.0 37 .................................... GTTTATCCAGTGAATCTGTTTCGATAGACCCAGCAAA 2328237 36 100.0 41 .................................... CCTTGCGCAACTGCGAAATAGTAACTGTAGTACCCTTGGGA 2328160 36 100.0 44 .................................... ATTACTATGAACGCCAAGTTCTTGCGAAAGTTAGTTGTTTGCTT 2328080 35 97.2 38 ................-................... TTCTCCAGCCGCTTATTCTGGAACCACGTAACTCCATT 2328007 36 91.7 0 .................................CTA | ========== ====== ====== ====== ==================================== ============================================ ================== 17 36 99.3 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : GCAAGCCGGTCATGGCTGCCCCGATGGCCAAGCCGGTGAAGCTGTTTTCGCAAATGGGGGTATCCAGGAGGCGCATCTCCCCGTATTTGCGATATAGGTCTTTGGTGACTTTGTAGGAGCCGCCGTAGTGGCCCACATCCTCTCCCAGAACAAACACATTGGGATCCCTGGCCATCTCTTCGTCGAGGGCGGCACGCAAGGCATTGTAAAGGAAGGTCTCGGCCATAGAGGGCAACCGCTGCTCAAAAATGTTGCTAAGTTTCCATTAAACCATTTTGCCGGCAGGGATCCGCTGGCAGACAACCCGCTGGGCAGGGCACCTCGCCCCTAGGGATCCCAACCCCGGTCATGTTGCCAAAAGCACACCAAAACGGTATCAGCAGCTCTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCCTCTTCGGGGCCCTTTTTTGCC # Right flank : GAAATAGAAAATGAGCTTGCTGCTGCCGAAGCTAGCCCTGACATTGGGAGATCCGGCGGGGATTGGGCCAGAGATTGTGCTCAAGGCGCTGGCGGATCCCCAGGTGCAGGCCTGCGCCCAGATAACGGTGGTGGGCGAGCGGCAGGTTTTGGAAGCTACCTACTGCCTTCTGCGCCAGCGAGGGGCAACCGACCTGGCCGACCCGGCAGGGATCCCGGTGCTGGAGGGCGGCAGCGGCTTCTACCTAGAGCCGTCGCGCGTGGGCCGGGGGGATGTCGCAAGCGGGGCGGCCAGCTTTGCCTACCTGAAAACAGCTATTGAAGAAGCGCTGCGGGGCCAGTTCCAGGGGATCGTGACCGCTCCCATTGCCAAATACCTCTGGCACCAGGCGGGCTACCCCTTCCCTGGCCAAACAGAAGTTCTGGCCCAGCTCAGCGGGAGCGAGCGCTACGGCATGCTGTTTGTGGCCCGTTCTCCCCACAGCGGCTGGCAGATCCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 6 2558125-2557478 **** Predicted by CRISPRDetect 2.4 *** >NC_007775.1 Synechococcus sp. JA-3-3Ab, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 2558124 36 100.0 36 .................................... GTTCATGGGCACAAACTCCCTTAAACGAGGTACGAA 2558052 36 100.0 38 .................................... GATTAGGCTAGGGGTTGCTCCCCCTGGAGTATTCTCAG 2557978 36 100.0 43 .................................... ACGCTTGACCAACAGACGGAGGAAAGCGCGATTCATTTTACAC 2557899 36 100.0 38 .................................... ATCTTTGGCAGCTTGGCGCGCCTTGCGCATCACTGCAA 2557825 36 100.0 42 .................................... CCCTTTGAGACTCCCAGCCGGAATCCGATCCAAGAAGATCGG 2557747 36 100.0 39 .................................... GTCCTTGGATCTTCCATGCCACCTACGGTGAGCAATATT 2557672 36 97.2 49 .........................G.......... TTTGGAAACTCCCCCTGCTGTGTTCCAGGGATGATCTGGATCCCCTGAA 2557587 35 86.1 39 ...AT.....A.A...-................... CGCTCCCGGCATTCCGAGAGCGGCAAAGGTTTTAGCAGT 2557513 36 75.0 0 ...TT...............TTG....G.CA....G | ========== ====== ====== ====== ==================================== ================================================= ================== 9 36 95.4 41 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : ATTACAAAGTGCACAATGACAACGGCAGTCCTGATGCCAAAGAAAGGGAACTGACCTATGTCTATTACTTCTACCGAGAACCCAAGCAGTTTTCTGGGGGGGAACTGCTGATCTACGACTCTGAAGTGCGAAACAATATGTATGTCAAAGCCGACACCTATAAAACCTATGTTCCTGCCAACAACACTATCATTTTCTTTCCCAGCTATCTGATGCACGAAGTTTTACCCGTGACTTGTCCCTCACGGCAGTTTGCCGATAGTAGGTTTACGGTCAACGGCTGGGTACGGCGTAAATAGGCACATTGGGCGAAATGATACAAGTGCGGGTTCTGCCCCTGCCAGTGCAAACGATGCCATTGGACAAAATGGTGTAGCCAGTGGTTGCCCCTGCGATCCCGCCCGATGGTCGTCCCTTGACTGCTGGTGGTCTGCACAAAGTGATTACCACTGATCACATTCCCCCCCCTCAACTTTGACACTGCCATCGTCGTTGTAGTA # Right flank : AAAAAACTAGCCCTTGATACACAGAATGGGTCTTAGGCGCGCTACGAGTTTCGCGATCTTGGCTTGGTCGGCAGCGCGCACAACTTTATCTACGTTTTTGTAGGCCTGGGGCGCTTCTTCGGCTACCCCCCGCAAAGAAGGGCTGCGGACGATGACGCCGCGCCGCCTCAGTTGTTCGACGATCTCCTGCCCTGTCCAGGCTTTGAGAGCTTGGTTGCGACTCATCGCCCTTCCGGCGCCGTGGCAGGCCGAGGAGAGGGAAAGGGCCTCACTTTGCTCCGTGCCGACCAGAATGTAGGAGGCCGTGCCCATGGAGCCGCCGATGATGACCGGCTGACCGATAGAGCGGAAAGCCTGAGGGATCTCTGGGTGGCCAGGCCCAAAAGCGCGCGTTGCCCCCTTGCGGTGGACGAACAGGCGACGTTTTTTCCCCTCTATCACGTGCGTCTCCTCCTTACAGGTGTTGTGGGAGACGTCGTAGATAAGGTCGAGTTCAGCCT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 2559456-2559271 **** Predicted by CRISPRDetect 2.4 *** >NC_007775.1 Synechococcus sp. JA-3-3Ab, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2559455 36 100.0 39 .................................... GATAAGGCCCCGGAATCATTTCTGTCATCCAACCAAAGC 2559380 36 100.0 38 .................................... ACGCTTACGCGGTCACCGTCGAAATCACCGCCCATTTG 2559306 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 100.0 39 GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Left flank : CCTTGTGATAAGCGCCGCAAGAAAATTGCCGACCTGCTAGAAGGCTACGGCAAGCGCGTGCAATACAGCGTGTTCGAGTGTGTCCTCGACAAGGACAAGTTCGAGGAGCTCAAGCTACGGCTCCGGAAAAGGGTCAAGCCCGATGAGGACAGCGTCCGCTTCTATCCCCTCACCAGCCACGCCCTTGACCAAGTGGAAATCTGGGGTGGGCCCCCCTTAACTGCACCCCCCCACTCGATCGTTGTCTAGCTCAAGCAACTCTCCACCCACTTCAGTACTTGATGTTCTCAAAAGCACACAAAAACGGTATCAACGCTTTTGCGAGCGCCTCGCCAAAACCCGCAAAGGCCGATTCTTTCGTTGACCCGCTCGATGCCTTGCGCCACAAGGCTTTCAGGCCTCTCACCCCCCTCTCCCAAGCTCTTTTTTGCCCTCTTCGACCGACCCCCTCGCAAATGGGTCTTGCATTCCTTGCCCTGCTTGGGTTTAATAGGGGTAGA # Right flank : AGGACTTAGGATCACTGTGGGCACAGCTGAGCAGATGGCGAGATTTTGGTCAGCATGGCAGAGAGCAGGGGGGTAGCTATGCCAGAAGGTTGGGAAAAAGTTACAGATTTAATGCGCCAACTGCAGGCAGTACAAGAGATTGCCGAGAGGGGGTATTGGCTCACCACGGAGGAACTGGGGCAGGTTTTAGGTTTACCAGAGTCCCGCTTGGCAATTCTGCGGGAACAACCCCTCGCCTATGAATTTCCGTGGCGCAACTTCCGCTGTTGTGTAGTTGACGAGCAAGAGGGGATCAGGCTTTGGTCTATCACTCCTAACAAGGCTATCAATGTCCACACCCCCACCACCGCGCCCCAAAAACAGCCTGCGGTCTATGCACGGGTGGATAACTTTTTGCCGCGGGACAAAAACCAACAGTTACTAGAATATGCGATCGCCAACGAAGGGCGGTTTGTCCCTTCCCGAAACTCAGCGGATGACAGTGAATACCGCCGTTCATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCCCTTCGGGGGGATCCCTAGAAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //