Array 1 1613742-1612815 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEQY01000001.1 Fusobacterium pseudoperiodonticum strain KCOM 1259 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1613741 37 91.9 39 ..........C.G...........C............ CCAAAATAATCATTTGCCCACAATGGATGTACAGATTTT 1613665 37 100.0 35 ..................................... TCCCAGATCATTTTACTAGATTCTTTGTTATAATT 1613593 37 100.0 37 ..................................... TTTAGTAAATCTTTTCTCATATAAATCACCTCCTACA 1613519 37 97.3 36 ........................C............ TTACCATTTTCATAGTAGCTAACATCTAGCCCTTTT 1613446 37 97.3 36 ........................C............ ATACGATTTCCTACTTGAGAATAGAAATCAACTTCG 1613373 37 97.3 36 ........................C............ GTTCTTTCCAAGAAAACTACGATGTCTGAGTCTCCA 1613300 37 100.0 37 ..................................... ACATTTTTTTGATAAAAGTTTCTCACCTCCATTTCAA 1613226 37 100.0 37 ..................................... TTCTTCCAAGTCTTATTGACTTGGACAACAGTCTTAA 1613152 37 100.0 38 ..................................... TTATACATTTTTATTAAAGCACAGCTTCTGACTTTGCT 1613077 37 100.0 36 ..................................... TTTATCAGCTTGAAGTGTGTCTTCTTCGTCTTCGTC 1613004 37 100.0 43 ..................................... ATTGAATCTCTTAATGAATATGTCACTCTACCGAAAGTATTGA 1612924 37 97.3 36 ........................C............ ACAATTCTTGAAATTCCAAGCATAGCAACTGCTGCA 1612851 37 83.8 0 .................C......C.......TC.TT | ========== ====== ====== ====== ===================================== =========================================== ================== 13 37 97.3 37 GTATTGAAGGTATTCCATTTATAATAAGGTTTAAAAC # Left flank : CTGTCCATTTATAACAAGGTTTAAAACAAGTTATCAGTGAATCTGGCGAAGAAATCTTAATGATTATGATCCATTTATAACAAGGTTTAAAACTGGTAATATCCATCTTCACTGTCAACATATATATAAGTATTGAAGGTATTCCATTTATAACAAGGTTTAAAACATAGCAGGAATAGCCGCCATTGCATACCAATAAGGAGTTTGTATTGAAGGCAGTCCAATTAGAACAAGGTTTTTAAATTTTTATTGAAATGAATCTTTTTTAGGTTTATTTTTTATTGTTAATTATTTATTAGAAAATAGTGTTAGATTTTTTAGCAGAGTATGCTATAATAAGAATTGAAAGAAAGTCCTTTTTTATATAAGATTTTTAATAAAATTTTTAAATTAATATACTTGATCAATTTATTTATGCTACCAATTACTACATTTTAGAAATCCAGTAGAATAAGGTTTAAAACAAGAAAAAGACATTTACTATATAACCTTCTTTTTCT # Right flank : AAAATTATCACTGTAATAGTGATTTTTTTATACTTATATTAATTGACATTTATTTTAAAAAATGATATATATTTTTATAGAGTCGATTATGTTTTTTGAGGGGGTTTAAAATGATTACATTTGGTAAAAATATTCAAAAAAGAAGAATTAATTTAGGCTTAGATACTAATGACTTAGCTAAATTAGCTAATTACCCTAATAGAAGTTACATCGAAAAGATTGAATCTGATAAAATGTATCCATCTACTAAAAAAATTCCAGATTTAGCTAAAGCATTATCATGGGAAATTGAAGATTTATTCAAAGATGTTGAAATTGAAGATATTGAGAATGATTTTATTTTTATTAAAAATATGTTGAAATCTATAAAATCTTATCAAGAAAATGAAACTCCTAGAAGAACGATTATTTTCTCTTTAGATGCTTGTAAAAAACATTATCTTTCTTTATTCGATAAATATATAAGAGAAGATTTTTTATCTAAGATTAATAATTTAGTT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTATTCCATTTATAATAAGGTTTAAAAC # Alternate repeat : GTATTGAAGGTATTCCATTTATAACAAGGTTTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 1623163-1613998 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEQY01000001.1 Fusobacterium pseudoperiodonticum strain KCOM 1259 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================================================================== ================== 1623162 37 100.0 40 ..................................... TTCCTTGCTCCATGTTCATAAGTATAAGCTCTGGTATCTG 1623085 37 100.0 34 ..................................... AATCTTAACCTGTCTTTTAAGTTCTTTCATTTCT 1623014 37 100.0 36 ..................................... TTTTCAGTATCTATTGCCTTTATTTCTCCAACTATC 1622941 37 100.0 36 ..................................... ATACATTTATTAATCTATTAGTTTTTTCTTCTTCAT 1622868 37 100.0 37 ..................................... TAAGTCGAATTCAATTTCTGACAGTCTTTCAATTTCA 1622794 37 100.0 36 ..................................... AACTACTAGTGTGAACATAACATACCTCCAATTTTA 1622721 37 100.0 38 ..................................... TAGAAAATATTTCATGAAAGCCGATATTTTCTAATTCT 1622646 37 100.0 41 ..................................... TAAAATTGAAGTCTATTAGAGCATTCATAATATCTTCTTTA 1622568 37 100.0 37 ..................................... TAAAACAACTTTTCAAGTCAACAAATGTTTCATCTAT 1622494 37 100.0 37 ..................................... GGCTGTTTCCAAAGAACAATTATTAGTTATTTTTTCA 1622420 37 100.0 36 ..................................... TAAGCCAGAACCCCTTTGATTTTTATCAAAGGAACA 1622347 37 100.0 38 ..................................... TAAGTGCTTCGATCTCTTTTGAGTTTTTGATTCCCTTA 1622272 37 100.0 37 ..................................... CTTGACTTCTTCTGCGTCAAAAGCTGAAGCTTTCTTA 1622198 37 100.0 37 ..................................... CTTAGGGCTCAAAAAGTCCCCTGTGCTGGTAAAACCA 1622124 37 100.0 35 ..................................... ACTATTTGAACCAGAATATAGAGTATCATTAGATG 1622052 37 100.0 37 ..................................... ATAAAGTACCTGTATTATCTATTTAAACGCGTTTATA 1621978 37 100.0 36 ..................................... TTAATATAAGTATACCCTAATTCTCTTGCTATTTGA 1621905 37 100.0 36 ..................................... CTTATTGACTTGGACAGCTGTCTTAAAGATATTGTA 1621832 37 100.0 36 ..................................... ATAACAGTCTTCTATATCATATAGCTGACCATTTCC 1621759 37 100.0 34 ..................................... TGTTAACGCCTTGTTCAACTACAACAACTTTAAA 1621688 37 100.0 35 ..................................... TTATTATATACGTGTTCAGATTGAACTCTATTCAA 1621616 37 100.0 40 ..................................... ATTTGCTCTTTGATCGTTATACCTGTAGTCTTAAGCTTAT 1621539 37 100.0 34 ..................................... TCTATATCACATATTGCTTCATCCACTTTATTTA 1621468 37 100.0 38 ..................................... ATCAACTTTTTTAACATCAAATCTTTCTATTGCTCTAA 1621393 37 100.0 36 ..................................... ATAGATAACCAGCATAGTTGATAAATCTCTCAGTTC 1621320 37 100.0 35 ..................................... ACAAAACTAAATTATTATCTTTTTGTATCATTTTT 1621248 37 100.0 39 ..................................... TAGTAAAGATGCCAAAGCCCATCAGACGTTTCCGCCCAA 1621172 37 100.0 38 ..................................... TCTCATATTCAAATTTATACTATCTGAATTATTTTCTT 1621097 37 100.0 35 ..................................... TTAAAGGTTGTTTAACTGCTAATCCCATAACTAAT 1621025 37 100.0 39 ..................................... TAGTAAAGATGCCAAAGCCCATCAGACGTTTCCGCCCAA 1620949 37 100.0 38 ..................................... TATAAATCTTTTACAGATACCATAAAACCATACTTTGG 1620874 37 100.0 38 ..................................... GCCTGACTTTTCTTCCAAGTCTTGTTAGCCTGAACAGC 1620799 37 100.0 35 ..................................... TGAAACTGGAGATGATAAGATATTTGTACCATATT 1620727 37 100.0 38 ..................................... TTATTTCAGCTTGGACTTCTTCTGCGTTAAACGAAGAA 1620652 37 100.0 39 ..................................... TCTTGACACTGAAGATTGTTTAACAACGAGAAATGTTCA 1620576 37 100.0 35 ..................................... TTCTAAGTCGAATTCTACTTGTTCAAGCCTTTCTA 1620504 37 100.0 38 ..................................... AGCATATCTTCTTTTACACTATTATAGTCAACACTGTT 1620429 37 100.0 37 ..................................... TAAAAGACATTTTAAATTTAAAATTATTTTTACATTC 1620355 37 100.0 35 ..................................... ATTCTTTATTAAAATTGTACTGTCTACCAATACAA 1620283 37 100.0 35 ..................................... TTCCCTAGAAGATGATAACTCATGAGTGATTGAAT 1620211 37 100.0 37 ..................................... TTAGGAGAAGAAAATGCAACACAACAACAATCATCTG 1620137 37 100.0 37 ..................................... ATCTATCAAACATTCTTTGAATATTCTTGTACATTTT 1620063 37 100.0 39 ..................................... TTCTTTAGTATCTTTTTGTTTAGATGTATGATTATATAA 1619987 37 100.0 37 ..................................... TCTCCATTAAGTATTTCTAAAATTCCATCCTTTTTGT 1619913 37 100.0 38 ..................................... TTAAAAATCCAGATGTAAAGTATGTTAGTGTTATAAAA 1619838 37 100.0 34 ..................................... CATAGCATTATCGTGAGGGGATACTCTTATATTA 1619767 37 100.0 35 ..................................... GTCAAAATCATATAGCTCAACAACGCATATTATCG 1619695 37 100.0 37 ..................................... TATAAGCTAATTCTTTATTATCATCTTTCATTTCATA 1619621 37 100.0 35 ..................................... GATGAACCAGTTTCTGTAACAATAAGAACATACAT 1619549 37 100.0 38 ..................................... TAATTACCCATTCTCCAGTTACATTATTTCTAACTTTA 1619474 37 100.0 37 ..................................... CTTAGTGAAAATCCGCCATTTTTAACTGCTAGATCCT 1619400 37 100.0 37 ..................................... ACCTATGATATCCAGCTCTTTTTCATCACCTGGATAT 1619326 37 100.0 39 ..................................... TAAATTGTAAAAATTTTGTTTATTTATGTAGCTTTATAG 1619250 37 100.0 37 ..................................... ACTTAAGACTTGAACTAAGTAAAGCTGGTGTTGATGA 1619176 37 100.0 37 ..................................... TTTTACGGATGTAATAGTTCTTAGCAACCTTACATCT 1619102 37 100.0 41 ..................................... TAAATTTCTAAATAGTTCTCTTAATTCTGTATTTTCTGTGT 1619024 37 100.0 36 ..................................... TCTTCAAACTTTATTGCTAAGATGTAACCGTGCTCA 1618951 37 100.0 35 ..................................... TCCAGAACCAATTTTTGGACTTCTAGTATAATTAT 1618879 37 100.0 35 ..................................... ATAATTTCCAAAATTGCTTAATGTTTCTAATTTTT 1618807 37 100.0 35 ..................................... TAGATAAGATAAATTTATCTTTTCCATTTTTTCTA 1618735 37 100.0 35 ..................................... GCTCAGGTAAGTTGCTTCCAATCGTAACTAAATTA 1618663 37 97.3 36 ........................T............ CCATTAATTATGAACTTATCGACTTTCCAACAAGAG 1618590 37 97.3 35 ........................T............ TATCATATATCCCCCTTTTAAAACTCCAATTCATT 1618518 37 100.0 39 ..................................... TCAAACTCTTTTACAACTTCCGTTGCGATACCAGTCATA 1618442 37 100.0 36 ..................................... CTCATCTCTACCACTTAGTGTAGATACTTCTAAATC 1618369 37 100.0 36 ..................................... AATTCTTTTTGTTTAACATTTTTTCCTCCTTATTAA 1618296 37 100.0 36 ..................................... CCCTAAGTACATACTACCTGCTAAAATTGCTCCTGT 1618223 37 100.0 37 ..................................... AGCATTAGTTTTAATTTTATTAGGTGTATTTGTATTG 1618149 37 100.0 35 ..................................... GTCCGTCGTCATCCCATTCACACTCACATCTATCT 1618077 37 100.0 35 ..................................... GTCCGTCGTCATCCCATTCACACTCACATCTATCT 1618005 37 100.0 35 ..................................... TTATTCAGTTATAAAATTTAATTCTTCTATTAGAA 1617933 37 100.0 36 ..................................... TTCTAAACAAATTATTCAGTTATAAAATCTATAGTT 1617860 37 100.0 37 ..................................... TTAAAAATTAAAGGTAGTTAAACCCTATACTACCAAA 1617786 37 100.0 36 ..................................... AGCGAAGACTTAGAAGATATATTGGCTGATGATGAA 1617713 37 100.0 39 ..................................... CTAAAGCTAGTTGTTGTATCACAATATCACCTCCTTTTA 1617637 37 100.0 43 ..................................... GAACAAGATGAATATATGAAAACTTTATTTGGAACACCTAGAA 1617557 37 100.0 35 ..................................... ATTATGATAGTGTAGTAGTCTAATCTGTATATAGG 1617485 37 100.0 36 ..................................... AACTCATATATGCCTTATCAAATAATTCCTTTTTAT 1617412 37 100.0 36 ..................................... TTTACATCTAGTTCTGGTTCGATTTCAGCTAGCCTA 1617339 37 100.0 35 ..................................... TGAAAATCCACCATTTTGTGCAACCATTTCTTTTA 1617267 37 100.0 39 ..................................... ATGGCTCTTTTTCTTTCAAGTCCCTTCACCTCCCTTTTA 1617191 37 100.0 36 ..................................... TCAGTTGCTTCGTCTGCATCAAAGTCGAACTCGTTT 1617118 37 97.3 40 .................C................... ATAGCAGGAATAGCCGCCATTGCATACCAATAAGGAGTTT 1617041 37 83.8 182 ..........C.G....A...G..........T...T TTTTATTGAAATGAATCTTTTTTAGGTTTATTTTTTATTGTTAATTATTTATTAGAAAATAGTGTTAGTTTTTTTAGTAGAGTATGTTATAATGAGAATTGAAAGGAATATATTTTTTATAAAATTTTTAATAAAAGTTATAAATTAATAATTTAGTAGATTTATTTCTGCGACCAATGTCT T [1617007] 1616821 35 81.1 38 .....A...--.G....A...G..T............ TATAGTAGCCTAATATATAAAAAATAAAATAACACCTA 1616748 37 97.3 35 ........................T............ ACATATTGAAGTTATTTAATTTTTAGTCCTGAGCA 1616676 37 97.3 41 ........................T............ TCATAAGTACAAGAGTTTTTAAGTACTTATTAGATACTATA 1616598 37 97.3 36 ........................T............ TCTTTACTTCAGAAGCTAATGCAACACCAGTTATAA 1616525 37 100.0 36 ..................................... TGATTTCTTCCAAGTCTTGTTAGCTTGCATAGCTAA 1616452 37 89.2 182 ................TC..............T...T TTTTATTGAAATGAATCTTTTTTAGGTTCATTTTTAACTCTTAATAATTTATTAGAAAATAGTGTTAGTTTTTTTAGTAGAGTATGTTATAATGAGAATTGAAAGGAATATATTTTTTATGAAATTTTTAATAAAAGTTATAAATTAATAATTTAGTAGATTTATTTCTGCGACCAATGTCT G [1616418] 1616232 35 81.1 42 .....A...--.G....A...G..T............ TTAACTGCTTTAAGGTTCAACGCACCGTAAAACCATGCATTG 1616155 37 97.3 39 ........................T............ TTACAAGTTTTAAAAAATACTTGTAATTCATTTAATTTA 1616079 37 97.3 36 ........................T............ ATTAACTCTCCTAGTCTTATAATTGCAATAGTAGAC 1616006 37 94.6 35 ..............T.........T............ TTTTATTCAGGACATCCTTCTGAACATGAATCGTA 1615934 37 97.3 37 ........................T............ CAATTCAAACTCTAAAGTATTTAATCTTTCTACTTCT 1615860 37 97.3 34 ........................T............ TCCTTTTTATATTGATAAACTGCTGCTCCTAAAA 1615789 37 97.3 38 ........................T............ TTAGACTTGTTTATTTTACTATAACAGTCTTCCTCATA 1615714 37 94.6 36 ........................T...A........ TCCCACGTATTAATTTAATTAATATCCTCATTTGTG 1615641 37 97.3 36 ........................T............ TCGATATTATCATTAAATTCTTGTTCCTTTTTTACT 1615568 37 97.3 34 ........................T............ ATATTTTTAGATTTAGCAGCTATATCTAATTCTA 1615497 37 94.6 35 ............G...........T............ GAACTCATTTATATCTTGATGATATTCTAAGTCAA 1615425 37 97.3 35 .................C................... TCATCATATGAGTTGAAATCAATGTATTCTTTTAA 1615353 37 97.3 35 .................C................... ATGCAAGAGACTTAAGTCTCTTTATAAGGACTTCT 1615281 37 97.3 37 .................C................... TCTAAAACAGATACATAAGAAACTCTTGGGTTTTTCT 1615207 37 97.3 34 ........................T............ CTAACAGTAATATATTTTCCCATTTCGTTAGATA 1615136 37 97.3 36 ........................T............ CTAATAATATTGATTTTTTGATAGCTGTTTTAGAAG 1615063 37 97.3 35 ........................T............ TACTCTTTTGTTATATCCAAGAAATAGTAGTCAGA 1614991 37 100.0 35 ..................................... GTAATACCAATCTCCAACATTCATTTCTTTTGATT 1614919 37 100.0 37 ..................................... TTGTTCTATTTCGGAATTATATGTCGTTTTTTCTGAA 1614845 37 91.9 35 .......G.......A........T............ ACACCTATTTTTTCTATTATCTCTTGCATATCTCT 1614773 37 97.3 37 ........................T............ GACATATATGCATTCTTTAATTCTCTAGCATCACTTT 1614699 37 100.0 37 ..................................... TTCTTCTCTACCAGTTTTAAATCTAAATCCGTAGCAG 1614625 37 97.3 40 ........................T............ TCATACAAGATCCTTCCGACAGATACAATTACTATACCTG 1614548 37 97.3 37 A.................................... CTAAATAAATCCCATCTGACCAACCTAAAATCACTTT 1614474 37 100.0 38 ..................................... TTTATCTTGGTTTTCTTTAATTGCTAATTCAGCTCTAA 1614399 37 97.3 35 ........................T............ ACATCAATATGAGTCTTAAAACAATCATGTTTACC 1614327 37 97.3 39 ........................T............ ATATTCTTATCTAATCCTTGAATAAGCTCTTGGCTTATT 1614251 37 91.9 29 ..........CTG........................ AAGTTATCAGTGAATCTGGCGAAGAAATC 1614185 37 81.1 36 T..A...TTA.GA........................ TGGTAATATCCATCTTCACTGTCAACATATATATAA 1614112 37 100.0 40 ..................................... ATAGCAGGAATAGCCGCCATTGCATACCAATAAGGAGTTT 1614035 37 83.8 0 ..........C.G....A...G..........T...T | T [1614001] ========== ====== ====== ====== ===================================== ====================================================================================================================================================================================== ================== 121 37 98.4 39 GTATTGAAGGTATTCCATTTATAACAAGGTTTAAAAC # Left flank : ATGATTGATTCTATTTTTTCAGGAGAAAGAACATAAGACTTCTCCTTTGTCTTTACTAAAAAACTATTTTTTTGTCTTGCTATACTTGCCCCCTCTGTTGAAATATATAAATCCATAATATTCCTCCCCTATTATTTTAAAATAAAATGAATATATTAGAAATAAAAATGTTATAATATATATTAACACAGTATTAAAAAAAATAAATAAATTTTTTATAAAAAAATAACTTTACATTTTTTAGAAAAAGTTGTACAATAAATTACAAATATTTAATTTGTAATTTTAATTCACTTTTGGTTAGTTTTTTAACATTTCACTTTTCTATTTGTACTAAAAAGAAATTCAATAACTTTTTCAATTTTTTTCAAAAAAAAGTAATAAATATTTAATACAAAAAATGAAGAAATACTAAAATTTCTCGATTTTGGTCAAATGTTGCTACCCCCTAAAAAGTGAATCAATTTACCATAAATTCGATATCCTTATACAAATCAAGG # Right flank : TTTTATTGAAATGAATCTTTTTTAGGTTTATTTTTTATTGTTAATTATTTATTAGAAAATAGTGTTAGATTTTTTAGCAGAGTATGCTATAATAAGAATTGAAAGAAAGTCCTTTTTTATATAAGATTTTTAATAAAATTTTTAAATTAATATACTTGATCAATTTATTTATGCTACCAATTACTACATTTTAGAAATCCAGTAGAATAAGGTTTAAAACAAGAAAAAGACATTTACTATATAACCTTCTTTTTCTGTATTGAAGGCAGTCCATTTATAACAAGGTTTAAAACCCAAAATAATCATTTGCCCACAATGGATGTACAGATTTTGTATTGAAGGTATTCCATTTATAATAAGGTTTAAAACTCCCAGATCATTTTACTAGATTCTTTGTTATAATTGTATTGAAGGTATTCCATTTATAATAAGGTTTAAAACTTTAGTAAATCTTTTCTCATATAAATCACCTCCTACAGTATTGAAGGTATTCCATTTAT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTATTCCATTTATAACAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [54-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //