Array 1 183516-180866 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKYK010000182.1 Klebsiella pneumoniae strain Kp_HUCA_Bac_66 NODE_350_length_575126_cov_48.490620, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183515 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 183454 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 183393 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 183332 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 183270 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 183209 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 183148 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 183087 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 183026 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 182965 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 182904 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 182843 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 182782 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 182721 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 182660 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 182599 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 182538 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 182477 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 182416 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 182355 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 182294 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 182233 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 182172 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 182111 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 182050 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 181989 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 181928 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 181867 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 181806 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 181745 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 181684 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 181623 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 181562 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 181501 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 181440 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 181379 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 181318 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 181257 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 181196 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 181135 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 181074 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 181013 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 180952 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 180894 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5901-6899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKYK010000015.1 Klebsiella pneumoniae strain Kp_HUCA_Bac_66 NODE_19_length_7076_cov_70.657150, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5901 29 100.0 32 ............................. ATCAGCCTGCGGGGTTCGGAGCTGCGTGTCTC 5962 29 100.0 32 ............................. GAAACTATTTCGGAGCATCTCATTGCTGAGGG 6023 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 6084 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 6145 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 6206 29 89.7 32 ............CA..............C CTTAGAGAAGCAAAAAAACCACCGAGGCAGGG 6267 29 100.0 32 ............................. TTACCAATGGGGAAAAATCTTCATTTGTAAAT 6328 29 93.1 25 ............CA............... AACATCAGTGGAAATCCACTGCGGC Deletion [6382] 6382 29 89.7 32 ......T.....CA............... AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 6443 29 100.0 32 ............................. TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 6504 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [6509] 6566 29 86.2 32 ............CT.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [6571] 6629 29 93.1 32 ............CA............... CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 6690 29 93.1 31 ............C..A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 6750 29 86.2 32 ...C........CA............T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 6811 29 93.1 32 ............CT............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 6872 28 79.3 0 ........T.A.CA........-.....A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 93.5 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //