Array 1 85549-85940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000013.1 Gilliamella sp. B14384G12 NODE_13_length_87220_cov_168.382016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 85549 26 100.0 35 .......................... CCGAAAAATAAAGATTTGGAATCAATAATGTGGGA 85610 26 100.0 35 .......................... CCGGGTTGAGTTCAATCGTGGATTCATCCGTTATT 85671 26 100.0 35 .......................... CCGTCATCTAAGAAAAATCAACTACTCGCTGAAGC 85732 26 100.0 35 .......................... CCGAAAAAAATGTATCATCAATTAATGATTGTTCT 85793 26 100.0 35 .......................... CCTGAGAATATTCCCAAAACGCTCACGATTAATGC 85854 26 100.0 35 .......................... CCGGTTATTTCACCATTTTTTACTCTATCAATTGG 85915 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 7 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATATAGGTGAATTTAATGAAAACAAAGAATTTGTAACCAAAAGAGGAAAAGTTTATAAAAAAGTTGAATAATTTTAAAGTGTTAAAAATATAAATTGTTTATTTAAAGTTTAAATTAGTAGGATTGATTATATATGTCAGCTTTGTGTTTTCCCTGTATATACAGGGATAAACCGCTGGTCGATCTGTTGGTGCTGTTTTTGAGATTATGTTCCCTGTACACACAGGGATAAATCTTTGATGCGTCAATATTACATAGCTTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACCATTTATTTAATAGCATGAAAAATATAAATTTATTGATGGAATTCCGTAGAATCTAATTTCAATTCCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : ACCGAAATTGCATCGATTAATAACTTTTTTAATGGAAATTACTATCTGTTCTTAGTGATACGTTTTGTTATTTATGCATTTTTTATTTGTCTCCTTATTAAATTTAAAATAACCATAAAAACTAAAGTCAACTCACAACTGTTTTTTAGAACTAGCAAATTGTGTTTTTTCTTAATTTGTTTTAATGAAATAATGTTGTTTATTCGGATGGAGTAAAAAATGTCTGCTATGAGTTTCTTTGACTATGTGATATTGTCACTTGGATGGTCTATCAATAATGGACTATGGAACATTATATCTATGTCTGGCATTTTTGTTTTGCCCTAAATATTTAAAATGATTAGCATCATTATTGATGTTAGAGACAAAGGGGCGCTTAAAGGAGAACATGCAAATATTATTGTTACTCGATTAGAACAATATATTTATATAAGTATTGTCGTAATCTTTTTTGTGTATTATCCATCAATTAGTCTTGATATTAGAGTGCTACATTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22444-21808 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000018.1 Gilliamella sp. B14384G12 NODE_18_length_30486_cov_161.727772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 22443 26 100.0 35 .......................... CCAGTAAACTAGCTGCTAATGCGGCAGGTGTAGGA 22382 26 100.0 35 .......................... CCGTAATCGATTGTGTGCGTTGTTTCGTCGTCACT 22321 26 100.0 35 .......................... CCGCGGGCGTTTGGTGCTGAATATTACGTTTTGAA 22260 26 100.0 35 .......................... CCGTGCGTCACAACTCGGATTAACGGAATTGAGTT 22199 26 100.0 35 .......................... CCGTAACTAATGAGTTTTTGGTCGGCAAGTGGGAC 22138 26 100.0 35 .......................... CCGGTTTTTTAATGCCTGCAATATAAATTTAGTTA 22077 26 100.0 35 .......................... CCGGTCAAATGAGTCAAGAAGAACTAACTGAATTA 22016 26 100.0 35 .......................... CCGTTCAGACTAGTATTGGTGTAATCAATAAAGCC 21955 26 100.0 35 .......................... CCGTGCATTTGCCTCTTACGGGCCTTTCGGCAGAC 21894 26 100.0 35 .......................... CCGTAATGGAATTGATTCTGTACTAATCCTATCCT 21833 26 76.9 0 C..........T..T........TCT | ========== ====== ====== ====== ========================== =================================== ================== 11 26 97.9 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CAAAAAGACTAATTTCTAGGTTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATCAAGGTTATTGGCATATGCATTAATTTATCACTTATCTATAATAATATACGGTTTTTGTATTCCCTGTATTCACAGGGATAAACCGCGCCATGTTATTCCCCCATCGTCACATGTCTGATGTTCCCTACACACAGGGATAAATCGAGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTATCATTTATTTAATTGCATGAAAAATATGAATTTATTGGTAGAATTCCGTAGAATCGAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : TTATTAAGAAAGTTCTGGAAAGTCAATCTTCATACCCCATGCCTACTCAGGGGGAATTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCACTTATTAAGTAGTTGTAAATTTCATCTACAATTTCTATCCCATATTTTAAGTAATCCGCTTCACGTTTTTTGCCTCGTTCACCAGGAAAAAAGACTTCACTATTTCCTTTGGCGGGTTTAACGTGTTTTAGTTGATCCAGCATGGCTGACATGTTCTTTTTGAACGTTTCAAGACCGATAAAATAATCAGGATTGATAACAATATGCAAATGTCCAAGATCGCGTCCTTTAGACAAGTCGGCATACATGGATGAGACGTTTTTGCCAAATGGTACACCTAATAAAATGCCTGACAACACATCCACCATCATCATTAGCCCATAACCTTTGGCATCCGCTATTGGTAATAGAGCGTTGACTTTGTGTGGATCGGTTGTTGGTTCACCTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24355-24085 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000018.1 Gilliamella sp. B14384G12 NODE_18_length_30486_cov_161.727772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 24354 26 100.0 35 .......................... CCGAATAACTGGAGTATATTTTTAGAGGTTCACCG 24293 26 100.0 35 .......................... CCGCGTTACATGAAAAATACCCGATGAAACCAATT 24232 26 100.0 35 .......................... CCGCCGGGACAACATTTGCATTTGACCTGACTGAT 24171 26 100.0 35 .......................... CCGGGTATATTTTAGGTGGTCGAATTGAGTTTTTA 24110 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 5 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GAAGAATACATAGAATTTACAATGCCTAATCCATAAAAAAGGCCTGAAACGATCCAATTTTAAACAGACTAATTTCTACGTTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTTAGGTTATTGGCATATGCATTAATTTATCCGTTATCTATAATAATATGCGGTTTTTTGTGTTCCCTGTGTGGACAGGGATAAACCGGCGATGCGTCAATATTACATAGCATTTTTTGGCTATTCAAAAAATCGCAATTTTATATTTCATTGTTTACCATTTTTTAATTATATGAAAAATAATAACTTATCGGTAGAATCCCGTAGAATCGAATTTTAATTTCCATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATAAAGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGG # Right flank : TCATATTAAATTAGAAGTTATTATCTTTATAAGAATGGATTTTAGATATTATTTATACGATATAGTGTTGATTGATAATAGTTTGTTTAAAGTATTATGTGATAAAATTATAATATAAATGAATTTTCAATTATCAGTATGGAGAAGCAACTAAACTCATAAATACCTAGTTATTTTACTGATTATGCTCAATAGTGCTTACAAAAATTGTTTAGTACATGAATATCATCCTAACTTTCAATAAATTAATTTAGGAAAATCTTTTTTTAAAAGTGGATAATAATTAATTCACCTAACTGTTTCGGCGTTTTTTTATTGCTCAACTCATATGAATAAAATACTATTATCAAAAATAAGATCTAATGTGTAAAAGAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAAGAATGAAAAATTTAATTGCTATTTCAATATTAACTTTGATCGGTTTCAACTCTTTTGCTAATGAGAATGCAAAAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 26290-25956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000018.1 Gilliamella sp. B14384G12 NODE_18_length_30486_cov_161.727772, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26289 29 100.0 32 ............................. GTTTTAATGTACAGGATATGTTTGAATTGTTA 26228 29 100.0 32 ............................. GCGTGATACCAAAACTAAAAATAATAAATTTA 26167 29 100.0 32 ............................. ATGAAAACTCGGCCGTTCGCAGAGCGATTGGA 26106 29 100.0 32 ............................. CCTGTTAATCCAATGCCAAATAGCTCATCAAT 26045 29 100.0 32 ............................. CAATGGTCTACCCAATACATCAATGAAGATGG 25984 29 79.3 0 A...........TG........C...T.A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.5 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : ATTATATGAACTAAAAAACATAACTTGAATCTAACCTATGAAAATTTTGTAACCGAGCAAAATAAGAAATCAACTCCAAAAAAAGAGTCATTTTGATAACAACAAAACATTAAAAACATTTCAATAAAATCATGCAAAAAACAGTAAAAAAGTTGGTAGAAATTTATACTTAATTATTTTAATTAATAAATAATAAGTTATGATAAGTGTTCCTTGTACACACAAGGATAAACAGGCTATGCATCAAAGTTACATAGTATTTTTTAGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTATCATTTATTTAATTGCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATGCTGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGTTCATTATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TATTAGATTAGAAGTTGTTAACTTTCTAAGGATAGAATGGTTTCTAAGTATTATTTATATGACACATATTTGACTGATTAATGAGTTTTTTTAAGGATTGGCATGGTAAAAGTATAAAGTAAATGAATTTTCACTTATTAATATGAAGAAGCAATTAACCTCATAAATACCTAATTATTTCACTGATAATGCTAAATAGCGCTTACAGAATTTGTTTTGTTTATAACTGAATATTACGATCCCTTTCCATAAAATAGTCTAGAAAAAGCTTTCTTTTCAAAAGGAATTAATAATTTATTCACTTAACTTCTTCGGCGGTTTTTTATTGCCCAAATCATCTAAATAAAATACTATTACCCAAAATGAAATTTAAAATATTAAAAAATTTAATTATTTTATCATCTGTTATTATTCAATGATAAATGGAAGTAAGGAATGAAAAAATTAATTGCTATTTCAATATTAACTTTGATCGGTTTCAACGTATTTGCTAATGATAA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2431-2825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000024.1 Gilliamella sp. B14384G12 NODE_25_length_3044_cov_165.182156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2431 29 96.6 32 ............................C TGCTGTTGCATAACTCAATGTTTTCTTACTTC 2492 29 100.0 32 ............................. CGCAATTTTTATAACAGTGTTGGGCAATATTT 2553 29 100.0 32 ............................. CGTTCCTCCTCTACGACATCCACCATTTTTAA 2614 29 100.0 32 ............................. ACGAATGGTTATTCGCGGGCATTTTGATGATA 2675 29 96.6 32 ............................T GATAACGGATTGACAATTTCGGCTGGGTGGGA 2736 29 96.6 32 ............................T GATAACGGATTGACAATTTCGGCTGGGTGGGA 2797 29 89.7 0 .............A........A.G.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : ATTAACTAACAATCGTAAATTTATTATGGATAAATTCACAACTCAAATATCGTATTTTTGGGGCGCTACGTGCTAGATCGTAGAAGTTCTGAACCTTAACGATTTAGCAATTAAATACCTGAATAACGGAAATTACTGAGCCGCGTGTAACAAGTTCCCACGTTGGAATAAATCGAATAGTAGGCGTAGCGCTAAACACAGACATCGATTTATCCCTTTACACACAGGGATAAATCGACAGAGCGTCAATATTACATAGCATTTTTTTGCTATTTCAAAAATCACAATCCTACATTTTATTTTTTCTATTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TATACTAAATTATTTATAATAGGATTTTATAAAGCTCTCGTTTGAGAGCTTTTTGTTTTAGGATATTTATCCGATTTATTATAAGTTTCGTTGAATTTGCTTTTCTGTTGTTCATCCTTTTGTTGCTAATTCAATTTAAAATTTTTAACAATGCTAAAACCCACTTGGTCCATATTTACTCATCAGACCTTGAACTAACCACGTTTTATTACGGTTATG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 117416-117628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000002.1 Gilliamella sp. B14384G12 NODE_2_length_406051_cov_192.400041, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117416 29 100.0 32 ............................. GCAACATTTGTTTTTTTAAAAACTTTGATATC 117477 29 100.0 33 ............................. CGTTTAATGTACATTGAAAACACACGCGCCTGC 117539 29 100.0 32 ............................. TGTTCATAAACACCGTACCCGATACCGGTTAT 117600 29 86.2 0 ............T.............ATA | ========== ====== ====== ====== ============================= ================================= ================== 4 29 96.5 33 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : GATGCGCTAACATCAACTTTATAGCATTAATTATGCCAATAATAAAAATACTCGTTAAATCAAAACAATTTGCTCAAAAAACAAACCAAAAAGTTGGTAAAATTTTAATGTACTTACTTTTAATTATAAAACAAAAAGTTATAATTAGAGTGTTCCCTGTATATACAGGGATAAATCTAACTCGAGAAAAATACATTTATTCACTCCCTTGTGTTCCCTGTATGCACAGGGATAAATCGGCGGGCGTTAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTCTATATTTTATTGTTAACCATTTTTTAACTGCATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAACCTAATTTTAATTTCCATTAGTTTTAATTAATCAAATAAAAACATAGTGTTATATATTCTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AAAAATATTACAAATCGCCCTAGTGGCGGTTTTTCATTGCCAAAATCCTTTAAATAACATACCATTGCAAAAAAATATAAAGATCAAGGAGATGGTGTGAAAAAAATAATTTTAGTAGGCTTGATTGGGTTGATTTCATCGGGCTGTGGTGAAAAGAAAGTCACTGAGGAGATGCTTGCAGGAGATTGGGAGTGTACAAATACCGAGCAAACGGCAAGATGGGAAAATGGAACTTTTCAAGATTTTGGAAAGGTCATAAGTGAAAAAGTCCTAATTACATATAAAAACTATGATGGAGTGTTGATGAAAGGGAGTGGTGATGACATTGCCAAGGGTATCTGGGGTTCAGTATCGTCAACTGTTGCTATGCAAGATGAAAAAATTTTAAGCATATCAGAGTCTTTTAGACAATATATATCTAATAAGTTTGAATATATTTCAGATAAAGAATATAAATACACTCAGTTTATTGAGAATGTTTTTAAAGGTTATTCAGAGGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 92613-92824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000010.1 Gilliamella sp. B14384G12 NODE_10_length_126881_cov_169.552163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92613 29 100.0 32 ............................. TTCATCTACAACTCGACAGGAAATACATGGAG 92674 29 100.0 32 ............................. TTCATGAACATCACCGATCAAATCGATGTCGT 92735 29 100.0 32 ............................. TCGGAATCTCTAGGAGACGCTGTTGCTCCATT 92796 29 86.2 0 .T..........CA............T.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GAGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AAATGCTAAGATTTATGGTGGGGTTTATAACTTATTTGACAAAGATGTTTCAAACGCTGACTTTGGTAAAACTCTAGAAGGCCGACGCTACTTTGTAGGTACTGAGATTAACTTCTAAATAAATTGAACTAATAAATATTTTTCTGTGAAAAAAGATGGCTGTTAAAACAGCCATCTTTTATTTATAGTAATCTAACTATTTACACCCTAAATATAAAAGTCACTTGTTGAACCTGCCATAACGTAACCTAGTGCAATATCACATAGCATTTTTTTATTATTCAAAAAAATCACTATTCTATATTTTATTGTTTTCTATTTTTTAATTACATGAAAAATATAAACTTATTGGTAGGATCTAATATTAATCACCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTAATTTTAATAAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : GGCGGGGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGCCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGGGTGTTCCCTGTATACACAGGGATAAACCGGAGAAATAGAACCGTTCCAATTACAAAAGATCGTGTTCCCTGTATACACAGGGATAAACCGCCTATTTTTAGATCTCGTTCTGACAACTCAGCGTGTTCCCTGTATACACAGGGATAAACCGTTTGTAATGAAAATATAAAAAAATGATTAGCGGCGTTCCCTGTATGCACAGGGATAAAATACAAAACTACTACAAACCGCTCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.20,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 93090-93298 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000010.1 Gilliamella sp. B14384G12 NODE_10_length_126881_cov_169.552163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 93090 26 100.0 35 .......................... CCGGAGAAATAGAACCGTTCCAATTACAAAAGATC 93151 26 100.0 35 .......................... CCGCCTATTTTTAGATCTCGTTCTGACAACTCAGC 93212 26 100.0 35 .......................... CCGTTTGTAATGAAAATATAAAAAAATGATTAGCG 93273 26 92.3 0 .C...........G............ | ========== ====== ====== ====== ========================== =================================== ================== 4 26 98.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TAAAACAGTATGTTATAATTGGGGAGTTCCCTGTATGCACAGGGATAAACCGTTCATCTACAACTCGACAGGAAATACATGGAGGAGTTCCCTGTATGCACAGGGATAAACCGTTCATGAACATCACCGATCAAATCGATGTCGTGAGTTCCCTGTATGCACAGGGATAAACCGTCGGAATCTCTAGGAGACGCTGTTGCTCCATTGTGTTCCCTGTACACACAGGGATAAATCGGCGGGGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGCCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGG # Right flank : AATACAAAACTACTACAAACCGCTCGCGTGGCGGTTTTTCATTGCCAAACTTTATCAAATAACATACCATTGCAAAAAAACATAAAGAATAAGGAAATGGTATGGAAAAGATTTTTTATTGTTTGCTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTACTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGGAACTGTTCGGGTAACCAATGATAGATTTGTTGCTAAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAATTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTTGCAAATGATAGAACAAAGTATGTGATTACGACTAAAATAGGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGTAACAAACCAGTAAATTTTTTTCCTAAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 103395-103911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPU010000010.1 Gilliamella sp. B14384G12 NODE_10_length_126881_cov_169.552163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 103395 26 100.0 35 .......................... CCGCGGTTTTTGCCAGAGCCAAAGCCGATCTGATT 103456 26 100.0 35 .......................... CCGGTATACGGGAGGCTGTAAACAGCACCGTTAAT 103517 26 100.0 35 .......................... CCGGTTTTCACCCCGCTCCACATATTTTTTATAAA 103578 26 100.0 36 .......................... CCGCGATTACAATAAAAGCACGGAGCCACTTGAATG 103640 26 100.0 36 .......................... CCGGGCGATCTTTACATCGAGAGGAGAGGAACAGAA 103702 26 100.0 35 .......................... CCGCAAACTCCAACGGTGAGTAATACTGAAAATCC 103763 26 100.0 36 .......................... CCGGCAATTTCTCACTGAGGGAACGCGAAGCATTGC 103825 26 100.0 35 .......................... CCGTCCGAGTCAGTAGGAACGCTGGTTTATGATTT 103886 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 9 26 100.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACATTTAAATTAAACTTAAGGTGAAGTTAATTTCACCAAAAGAGTAAATTATGATAACCATGGCGATACAATTACCAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAATGTGTCAAAAAGTTTTAGGTTAACCATACGTTTCAGTATAAATATCAATAAACAATTTAGCTTAACCTTATGTTCCCTGTACACACAAGGATAAATCGGCGGGCATCAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTATATATTTCATTGTTTACCATTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATGTAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATGTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : ACCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACTATATTGCTAATTTAAGGATAATTTTTCAGGTAAACTTTTGAGAATGATAACTTAAAAAAATTATAAAAAATCTTCGAAAAAAAGGGATTTAATTATCATAAACCAAATGATATGGTTGATTTCTTGAATTTTCGGACTTTTCCCAAATCTTATTGGTCTCACGATAATTTTTTGTGTATCAAACAATTTATTTTTTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAAATTATAATGATAAAACATTTAGAAGTTACATCAAACTATTTGCTAAATCTAAAACGTCGAAATTGAGATAATGATTTTTAGTTGAATTAGTTAATGAAGTAAACAATTTAATTAGTTCTATTAACCAAATAATTACTGCAATAATAATTCATGATGATAATAACTTACTTTTAGCAGAGAAAATAAGAGATTTGCTTAATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //