Array 1 75396-74879 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARR01000009.1 Gilliamella apicola strain A-8-12 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ===================================== ================== 75395 26 100.0 35 .......................... CCGGTAACTAAGGTCAATAACACGGATGTTACGCT 75334 26 100.0 35 .......................... CCGGGTTAGAATTTAGTACATTTGCAGAATTAAAA 75273 26 100.0 35 .......................... CCGTTAGCAGTTTTCATAATATCATCAATAGATTC 75212 26 100.0 35 .......................... CCGACACGGATATTACCATAGGCGGAGATTTCGGT 75151 26 100.0 35 .......................... CTGGGCGTATAATTGATCGCCCTTAGTTAATAGGT 75090 26 88.5 35 .............G..T.T....... CCAAAAATGAAATCGATTACAGTTTTTGTGAAATC 75029 26 92.3 37 .........A......T......... CCGCTATAGTAATGGTACGCACAGATAATGCGTACGT 74966 26 96.2 36 ..............G........... CCGGTTATATATTTGCACTAAATTACGCCCTTCGGC 74904 26 96.2 0 ........................T. | ========== ====== ====== ====== ========================== ===================================== ================== 9 26 97.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATCGAACCGCCTCTACCACCTGATGATGCCCTGCCACCCGCTATCCCAGAACCTCAATCTCTAGCCGATAGTGGCTTTAGGAGTCGCTAATATGAGTATGTGTATTGTGGTAACTGAAAATGTTCCACCACGATTACGTGGACGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATTGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTAGCAGAAGAAGGCAATGTTGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGTTGCCAATAAATCTAAATAAAACAATTATATATATTTAGA # Right flank : TAGTTAGATTAATTAGGTAAAGTAATGAAAGGCTTTTAGCTACAGGGTTATAAGCATATCTTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACCAATAATAGACATATATTTACTTTTATATTTTCATTAACATAAAAAATCGAATAATATTTATTAAAAATCTTGGATAGCTGTAAAATTCGTTTTAAAACACTAAAAATAAAGGTAACAGTTAACTAACTAAACTAATAATCAAAAATAGCGTACAATAGCGCGATATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTATTGAAGGTGCGGGTAAAACGACAGCAGTCAATACCGTTGCTCGTATTTTAAATCAATATCATATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCAATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTAGATGATGAACCTTTGACG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55594-55744 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARR01000014.1 Gilliamella apicola strain A-8-12 NODE_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55594 29 100.0 32 ............................. GGGACTACTCGGGCAGAGGTTGAGGCACAAAC 55655 29 93.1 32 .............A..C............ AAATATCACCCAACCTGTTTTTCATTATCCAC 55716 29 82.8 0 ..............T.C.........ATA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 92.0 32 ATGTTCCCTGTATGCAGAGGGATAAACCG # Left flank : GTGAGAATGTGGATAAAGCAGATCTTAAAGGTTTAGAGCTATCATTCAAAACACCTCTATTTACTGATTTCTTATTAAGTTCTAACTATTCTTGGAATAAATCAGAACAAAAAACCGGAAAAAATAAAGGTAAACCTTTAAACCGTACACCAAAGCAAAAATTCAATACTCAACTTGATTGGTATGTAACTCAAGAATGGGATTTATGGACTAAAGTTGCTTATTATGGCGTCGAAAGTACAACAGATCGTAGCGGTAAGAAAATTGAATATCCAGGCTATACTTTCTGGGATGTAGGTGCATCTTTCCATATAAATAAAAATGCTAAGATTTATGGTGGAGTTTATAACTTATTTGATAAAGATGTTTCAAACGCTGACTTTGGTAAAACTTTAGAAGGTCGACGTTACTTTGTGGGTACTGAGATTAACTTCTAAATAAATTGAACTAATAAATATTTTTCTGTGAAAAAAGGTGGCTGTTCAAACACCCATCTTTTT # Right flank : ACAAAACTACTACAAACCGCTCGCATGGCGGTTTTTCATTGCCAAACTTTATTAAATAACATACCATTGCAAAAAAACATAAAGAATAAGGAAATGGTATGGAAAAGATTATTTATTGTTTGTTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTATTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGCAACTGTTCGGGTAACCAATGATAGATTTGTTGCTCAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAGTTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTGGCAAATGATAGAACAAAGTATGTGATTACGACTAAAATAAGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGTAACAAACCAGTAAATTTTTTTCCTAAGATA # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCAGAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 88% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8406-8198 **** Predicted by CRISPRDetect 2.4 *** >NZ_NARR01000058.1 Gilliamella apicola strain A-8-12 NODE_58, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 8405 26 100.0 35 .......................... CCGTATCGCGTAGGGCTGTTCGAGCTGGTGCTGTA 8344 26 100.0 34 .......................... CCGGAAAGGGGGGGCGTTCGCCATACCTAACATG 8284 26 92.3 35 ............C.T........... CCGGCAGAACTAGACACAGAAGCAATCAGTGGATA 8223 26 88.5 0 GC...........G............ | ========== ====== ====== ====== ========================== =================================== ================== 4 26 95.2 35 ATGTTCCCTGTATACACAGGGATAAA # Left flank : TAGTATAAAAAAATCAATAAATAATTTATTTTAAATTTATGGTTATAAACAACACACCATGTTGAGCTAAGATAAACGTTTACTATTAATATTGAGTAATAGCTTACAAATAACAGCGTTTATAAAATTATTTCAATTCAAAAAAATATATTGAATTACTCAAAATTACAGAAATGCACTTTCAAAAAATGAGTACTTGAGATTAATTTGTGAAAATTTTATAACTAAACTACATCAACAAACAACTTAAAAAGTAGAGTTATTTTGATAACAACAAATCATTAAAAGCAGAACAATAAAAATTCCCATTTTTTAACTAAATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTCTAATTAATTAAATAAAAACAGTGTGTTATAAATACAGATTTTAATACAAAATAGCCTAAAAAATTGGTATAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TCATAATAGATTAGAAGTTGTTAATTTTATATGAATGGATTCTAAATATTATTTATACGACATATATTTGATTGATTAATGAGTTTTTAAGGTTTGCATGGTAAAAGTATAAAATAAATGAATTTTTACCTATCAGTATAGATAAGCAACTAAACTTATAAATACAAAGTTATTTTATTGATTATGCTCAATAGCGCTTACAGAATTTGTTTTGTTTATAACTGCATATTACGATCTCTTTCCATAAAATAGTTTATGAAAAGTCTTCATTTCAAAAGGAATTAATAATTTATTCACTTAACTGCTTTGGTGGTTTTTTATTGCCCAAATTATCTAAATAAAATACTATTACCCAAAATAAAATTTAAAGTATGAAAAAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAGGAATGAAAAATTTAATTGCAATTTCAATATTAACTTTGATCGGTTTCAACGCTTTTGCTAATGATAATGCAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //