Array 1 95529-94403 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYMZ01000001.1 Escherichia coli strain N039.H-10 NODE_1_length_380458_cov_21.0208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95528 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 95467 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95406 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95345 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95284 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95223 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95162 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95101 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95040 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 94979 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 94918 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 94857 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 94796 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 94735 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 94674 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 94613 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 94553 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 94492 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94431 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112767-111030 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYMZ01000001.1 Escherichia coli strain N039.H-10 NODE_1_length_380458_cov_21.0208, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112766 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 112705 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 112644 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 112583 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112522 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112461 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112400 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112339 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112278 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 112217 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 112156 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 112095 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 112034 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 111973 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 111912 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111851 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111790 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111729 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 111668 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 111607 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 111546 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 111485 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111424 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111363 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111302 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111241 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111180 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111119 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111058 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //