Array 1 22457-22301 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 22456 25 100.0 41 ......................... GTAAAGAATGCTCTGAATGCGGCGTCAAGCATATCGTCGAA 22390 25 100.0 40 ......................... ACGAATAATTCGTTCCAGCCCTCTATTCCTATGTTTGCAT 22325 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 3 25 100.0 41 GTATCAGAAAAGAATGAATTGAAAG # Left flank : CAGTAGCTCGTCTTGACGCAGGCCGGGATGTTTGCAAGGGCAATTAGGGACCAAGCCCCATACACACCCTTCAAAGCCAAATGGTGAAAAAACCGCCCTGAACCAGTATCAACAAATAGCTGTGCCCCATAACCCCAAATGTATACCTTGTCCTCCGCTCTAACCAGACAGTCATCATCTCCTAAGATAAAAATAAGAAATAAATGGAAAGTGAATAACAGAGGTTTTTCTGTCGTGATACGGGGTGGGAGGAAATGTTTCCCCTAGAAATCTCTGTAGAAACGATTTCCACGGGAAAAGTTAATAGCCTACGGGAAGAAGCCATTTCTGAAAATACATTCTTCCCTGGCCTCTCTTCCCGATCCATATCATTTATAACTCACAATTGGAAAACTAAAACAAAGCTAATATATTCCATGGAAAACTTTGACATAAAAACACTTTCACACAACACACAAACAAATAAATAACACCCAAACAAAATAAACCCCAAAGAAACA # Right flank : GTGGCTTGGTCTTAGATTATGCTAGCTTTGTCGATTGAGTTTTGTTTAAAGTTTTTATTGTGGGAGTGTGTATTGCTTTATATGGTTTCGATCGTGTATTTTGTTTTCGAGTTTTCTGCTGGGGGTGGGGGCTCTCTTCCAGTGTTTGCTGGGGCAGAGAGCCGTGGGGCTTTCCTGGGGATGGTTAGACGGCTTGACTCTGGGCTGTCTGAGTTGTTGCATTCGGGGAGGGGTGGGAGGTCTGTTTTTTCTCTTAAGCCTCTGCGTTTCTTGTCTGGCTACAGTGTTGTAGAGTCTGGGTCCTCTTTTGGGGGCGTTGTTTTTGAGAGGGGGGCTAGGTGTAGCCTGGAGGTTGCGGTTTTTGACGAGGAGGCTTCTAGGCGGCTTGTGTCTATTCTCGCGACTAGTCCGCTGGGGCTAGAGGTGAACGGGGTCGAGTTTGGGCTTGTCGGCCTCTCTATTAGGATTATCGACCCATCGAGCGTGATTAGTGGCGAGGA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 344956-344677 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================== ================== 344955 24 100.0 42 ........................ AAAGTGTTTTTTAAGATGAAGATGACCGCATTGAAATCGTGG 344889 24 100.0 37 ........................ TGTTGTTACGCTTTACACTGACAATTAATGGGATTTG 344828 24 100.0 40 ........................ GTTGCAAAGACGACAATACGACTGAAATATTTACGCAACA 344764 24 91.7 39 ......G..C.............. AAAATAAGGACAACGATATCTAAGATATCGGCAAAAAGG 344701 24 75.0 0 .........C.....G....GGCC | C [344679] ========== ====== ====== ====== ======================== ========================================== ================== 5 24 93.3 40 TATCAGAAAAGAATGAATTGAAAG # Left flank : CAATCGGCCAAAACATATCCCAAGCCCTCAAAGGAAAAGGAGGAGGAGTAAACGACCTATACCAAGGACACATAACAGAAACCCAAAACATAAAAGAAGCACTAATCCAAGCAGTAAAGAAAACACTCCAACAACAACAATAACCCCCACCAAGCACCCAACAACTTAGCCTTCTTCCCATGCAAGCACCAAGCAACAAAAAAGATAAAGAGAAAAACAGAGATTTCCCCACCGTGATACGGGGTGGGAGGAAAGGGTTCCCTTGGAAATCTCTGTAGAAATGTTTTCCACGGGAAGCTTTAACGCTTTACGGGAAGAAGCATCTTTGTAAAATACATTCCTCCCTGGTCCCTCTTCCCAGTTCATATCATTTACCATGCACAATGAGAAAACTAAAGAAATCCTACAATGATAAATGGGAAACACTTGCACAAAAACACTTTCACACAACAGAGAAACAAATAAATAACACCCCAACAAAATAAACCACTGGGAAACAG # Right flank : TTTTACCTTTATGTGCTTGTCTATGGGACTAGATGTAGTGGGGAAAGGAATAGAATGAGTTTTTGGGCTGGGTGCGGGATTTTTCGTGCTTGTTTGCGGGTGTTAAGAATTATATAGTTCTTTGTGGTTTTTCTTTGTGGTGTTTGTATGTTTAGGCTGAATAGGGAGCAGAGGAGGCTCCTGGAACGCATGGGCCTCAACTTTAAGCCCCTTGACGGCGTCCAGGAGGTACAGCTCAAGATGCAGGGCAAGACCATAGTTATCAGGTCTCCGGAAGTCCAGGTAATCGAGATCAAGGGCGGCTCCAGGATATACTACGTGTCGGGCATAGAAGAAGAGGTGGCCGCGGCGCAACAAGAGGTTCCAGAGATATCGCAGGAAGACGTCGAGCTAGTCGTACTCAAGACGGGCGCCAGCCAGGAAGAGGCAAGGAAGGCTCTCATCGAGGCAGGGGGAGACATAGCTAGGGCAATCCTGCTACTCAGCCAGAAAAAGGCCTA # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCAGAAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 359366-359212 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 359365 25 100.0 39 ......................... TCGCTCATTTCCCGCTCACCTTTTCTAATAATTTGACAT 359301 25 100.0 40 ......................... TTCGGAAAGCTAACGCTCTTACCCTTGATAGTAATACCAA 359236 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================== ================== 3 25 100.0 40 GTATCAGAAAAGAATGAATTGAAAG # Left flank : CCAAAAAGCCCCTCACCAAAAAACTAACCACTGCCCCTCCCAGCCTCACACTAAAATTCCCCTGCCATTTTCACGGTCAAAAAGTCACGCCACCTACAACCGCATCGCGTGCACTCCCTATCAGAGACGCAACTCCAACCAAGACGCATAAACAGCATAGGAAATTTAAAGGACTCTCTACCTCGTCTAAAGCTAAAATTTTTGAAGAAAAGAGAAAAACAGAGATTTTTCCATCGTGATACGAGGTAGGAAGAAAGGGTTCCCCTAAAAATCTCTGTAGAAATGTTTTCCAAGGGAAACTATAGCGTTTTAAGGGAAGAAGACTTTTTGTAAAATAAAGTCTTCCCTAACTTCTCTTCTCGATCTATATCATTTATAAGTCACAATTGGAAAACTAAAACAAGATAATGTGTTCTATGGAAAACTTTGACATAAATACACTTTCACACAACAGAGAAACAAATAAATAACACCAATACAAAATAATCCCCAAGGAAACG # Right flank : AATATAAGAGTGCGCACACTATACGCAGTAGAAACAACAGACGCAAAAATCCAAATACCCCTAGTAATCATAGGGCTCCTCGACTCCACCGGCGACACCCCCTCAAGGCTACTAGCTAGCACCCTCGAATACGTGAAAACATTAGGCCTCAACATAGGGGGAAGAAAAAGCCCCGGCCTCGGGCTCCTCGCCCTACAAAAAGCAGAAATATACGCCTTCCAGCCAGGAAAAGACCAAGACCAGCACGGCGAGAAGCTTGCATTCCCATTCAGCGACAAACCCATATCGATAGAGGCCTTCATAGAAAAACTAAGATCTACGTAGCAATCCAGCCGAAAAACAAAGCCAAAAAATCTATAATATCTTTTTTAAATTCTGCTAAGTATTTTCAGATATTCTTGAACTTTGCCCCTATTATACTTTATCTTTGAGACCGTCCACCTGTCAGCTTGCCTCGAAACTACAACTTTTTCAATTATGGTGTAGGAGAGCCCAGCGTG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 4 370781-370566 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 370780 25 100.0 38 ......................... CCATGTTTTTTTGTGAATAGAGAAGTTTTTGTTTATGA 370717 25 100.0 37 ......................... AGGATAGTGGCAATTATGCTGTAGAACAAGACGAAGC 370655 25 100.0 40 ......................... CAAACTATTATCTCACTTCTTGTTCCCATTATCCCACCCT 370590 25 96.0 0 ..........C.............. | ========== ====== ====== ====== ========================= ======================================== ================== 4 25 99.0 39 GTATCAGAAAAGAATGAATTGAAAG # Left flank : TACATACACTACACACTCAACACCGCACCACTACAAGGCACAAAAACAATCAGAACAGAAGAAGCAGTACTCACAACAATGGCAATACTAAACCTCCTAGACCAACAAACAACAACCTAGCCCAAAAACCACCACACAAATACCCCACGAAACCTCCCTCTATCCCCAAACACTTTACACACTCATACAAAGCTAGCAATATTGAAGAAAAGAGAAAAACAGAGATTTTTACATCGTGATACACGGTGGGAGGAAATGGTTCCCCTAAAAATCTCTGTAGAAACGTTTTCCACGGGAAAAGTTTGCAGATTAGGGGAAGAAGACATTTCTGAAAATACATTCTTCCCTGACCCCTCTTCTTGATCTATATCATTTATAAGTCACAATTGGAAAACTAAAACAAGATAATGTGTTCCATGGAAAACTTTGACATAAATACACTTTCACACCACAGAGAAACAAATAAATAACACCAATACAAAATAAATCCCAAGGAAAGT # Right flank : CATAAATTAGGAAAGCGCGTGTGGCTTTGCGGTATGATTTTTGATGAAGGGTCGTGAACATGGCTGTACTATATTTCGGAGTTTGTGCTTACTACACAAAAAACCATTAAATTTTTATATGGAATTACAGTAAATATAGTTGTATGTTGTCATCAAACAATTTTTTTAGGTTACCTTCCAGCTACACACTAGCAGATGTCTTCATAATTGAGGCCTTGACACACCTGCACGTTGGTTCAGGTAAGACTGGCGGAGCTATAGATCTGCCAGTTCAAAGGGACGAGAACGGTTATCCATGTATCTATGCTAGTAGCCTGAAGGGAGCACTCAAGACGTCTCTCCTCCATGGAGCTATTAAGATGGGTCACACCAAGGACGAAGCTTTGGATCTCGTTAGAGCCCTTTTGGGATCAGAGCCGGGAGACGAAGAATCGTTCCAGTCTAGCGTGGCTATTCTCGATGCATACCTTCTGGCTATGCCTGCTAGGAGCCTTAAGGGT # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 5 404321-404068 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ====================================================================== ================== 404320 25 100.0 45 ......................... TGATGTGCCTTTGTTGATGTTGATTCCTCTAAATTCTATGCTCAA 404250 25 100.0 38 ......................... CTCTCATCTTTAGAACATTTTCCCATTCAGCTTTCCAC 404187 25 100.0 70 ......................... CGAAAGGAAGACTGTCCTATGCACACTTAACGACGACTTCGATGCAACTCAGAAAGCGCGCGCTCCAATA 404092 25 80.0 0 .........T......G..C..TG. | ========== ====== ====== ====== ========================= ====================================================================== ================== 4 25 95.0 51 GATGCAACTCAGAAAGAATTGAAAG # Left flank : AGCTATCATGAAACGTTTCACGAAGAGAAAATGGTGGGCCCGCTGGGATTTGAACCCAGGACCACCTCCGCGTCAGGGAGGCATCCTGCCGCTAGACGACGGGCCCTAGACGTCGCAGAATAGTAGAGCTTGATGGGTAATAAATTTTTCTCCCCAAAGCACGAATCATGCATCAAGGATCTACAAGCTTTACACCCAGCACAAAACAGGAAACACGCCCCATCATTAACTAGCTTACATCAATAAAGCATTTCTATTTTGTCAATGTTTTCCCATTAGGAAAACTAAAAGTTGTTTATGAAGTTTCTCGTCGGGAAGGTTATTTTAAAAAGAGATTACGGGAAAAATTCCCGACCCAAAACGGGGTGTTTCGGGAAAGTTCCCTATCGGGAAGTTTCAGAAGTTTCCAACGGGTAAATTTGAGTGCTAAGGCAGTTTTACAGACTTCTTGATAAAATTAAACGTTAAACATATAAACCACACCCGAGTAAAACAATTCG # Right flank : TTTTTGGTATGTTTGTTTTGTGCAGGAGGGACAAGTTTATATAGTGTTTTTTGAAAAGGTATGGAGGCGTTGCTGATGAGTCTGGAGGAGTTGAGGTCTCTTGAGGGGCAGTTGCTGATACCCTTGGAGATGTACTTGGCAGCGGGTATAAGGATTGGCACTAAGGTGAAGAGCAAGTTCATGAAGCCTTTTATCTACAGTGCTAGGCCTGACGGGCTCTACCTGCTCGACGTGAAGAAGACTGACGAGCGTATAAGGATAGCCGCGAAGTTTATCGCGAGGTATGACCCGGCTAAGGTCGTCGTGGTTTCTGGGCGCCAGTATGGTCACAGACCTGTCAAGAAGTTCTGTGGGCTTGTTGGCTGTAAACCTATTCTTGGAAGGGTTCTGCCTGGGACATTCACAAACCCGGCTCTAGCACACTTCACTGAGGCAGACCTCTTGGTCGTCACTGATCCCCGCGTGGACGAGCAGGCCGTTACTGAGGCAGGTCAGATGGG # Questionable array : NO Score: 7.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-1.09, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTCAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 6 418224-417400 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 418223 25 100.0 40 ......................... TTAGGGCGTCTGCGTTAGCTACTACGAAACTATTTCTCAA 418158 25 100.0 43 ......................... CTTTGTAGAAGGTGGGGGATAAGCATTCTAATCAGAGAAGTCT 418090 25 100.0 39 ......................... TAAAATTAATCCCAAACCGTAAGTTGTTCGATTGGTTTC 418026 25 100.0 41 ......................... CAAGGCCGCAAATCTTATCCCTGACGGAATCGTATAGTCGT 417960 25 96.0 42 .........C............... TGATTGACAATGTGTCGGGCCAAAGTATACGCTCTGACCCTC 417893 25 92.0 46 .......T.C............... GCGGTGAGGTTGAGTGTCCACGAGTCTGCTGGGTAAGAGGTGTATG 417822 25 96.0 37 ...A..................... TCATGTCCAGGTATCCATATGCTATGAGCGTCTTCAG 417760 25 96.0 41 ..........T.............. CGCTTTCGAATGGTATCAACCAAGTCGTCCCATATCTCACT 417694 25 96.0 46 .........C............... GCTTTCCACTCTTTCCCATCAAAGACATGAATCGTTAGAGTATCCC 417623 25 100.0 41 ......................... TTCGATGCTCAGTACAGTTAACCTCATCGTACTCCAGCTCA 417557 25 100.0 41 ......................... AATATCGGGGACGCAACGGCTACCCCCTTCATTGCTACCGG 417491 25 92.0 42 .........C.....A......... AGAATCCTAATCAAGCCCCTCGCCTCGTATTTGTGCAAGACC 417424 25 96.0 0 .........C............... | ========== ====== ====== ====== ========================= ============================================== ================== 13 25 97.2 42 GATGCAACTAAGAAAGAATTGAAAG # Left flank : ACACGCGGCAATGGTGGGCCCGCCGGGATTCGAACCCGGGACCTCCGCCGCTCCCAGAGTCGAGCCCCAAACACGGCGCCTTGTGAGGGCGACATCCTAACCGCTAGACGACGGGCCCAAAGAGCCGAAAAATAGAGCCAACCTAGAGTAATAAAGTTTTCTCCCCAAGGGTCGAACAACAAAAACCTAGCCCCAACAAACACCAAACACAGGCACCAAGACCCCTAGAATCTTCTACGACAAACATCATTTCCACTTTGTCAATGTTTTCCCATTAGGAAAACTAAAAGTTATTTATGAAGTTTCTCGTTAGGAAGCCTATTTTAAATTTAGGTTTACGGGAAAAATTCCCGACCCAAAACGGGGCATTCTGGGAAGCTTCCCAGTAGGGAAGTTTCAGAAGCTTCCAACGGGTAAATTTGAGTGCTAGGGCAGTTTTGCAGACTTCTTGATAAAAATAAACGTTAAACATATAAACCCCACCCGAGCAAAACAATTCG # Right flank : CTCGTCCTTTATCTCATCGAGTTAGCGCGCGGGTATCTGAGAGATTTAGCTGGGTGAGCTTGGGTGTCTTTCTATTGGGTTCTGTGACTGGGCTTTATGTGTGTCTTTTGTTTATTGGTTGAGGTGTGTGTAGGAGAGGCGCCTTGAGTTTTCCCTTGCAGAGTGCCGAGATGATTCGCAAAAAATTTTAAAACCTGATGTGTGTTTTGTGTTTCTGGTGGGGCCGGTAGCTCAGCTAGGTAGAGCGATGGCGTGGTGCACGTCGAGGCTTTTAACCCATAGGTCCCGGGTTCAAATCCCGGCCGGCCCGCCAGTTTTTCTCGTTTTTTCTTTGAAAGAAAAGTTTAAAAAACAAGTTTTTGTCAATAGTTTCTAGCTACGCGGTAAGGGTTTGTTATGCCGAAAAAGTTCAATGTTTTGGAACATGAGCTGGTTCCCAAACATGTCTTGCTGTCTGAGGAGGAGGCTCTAAGGATTCTAAGGGCTATGGGCCTGAAGAA # Questionable array : NO Score: 8.89 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTAAGAAAGAATTGAAAG # Alternate repeat : GATGCAACTCAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 7 422091-421678 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 422090 25 100.0 42 ......................... ATGCATATCCAAGTAGCCCCACTGCGACAGTGAAGCTGTACA 422023 25 100.0 37 ......................... CGAGCCGCTATACGAATATGGCGTAAACTACAAGAGC 421961 25 100.0 39 ......................... GAGAAACCTCTTGTCTCCAATCTTCATAACAATAAATCT 421897 25 100.0 43 ......................... TTCAAGGTGCCGTAATACTTCAAGACGTACTGTACAAGCTTGT 421829 25 100.0 38 ......................... TCCGCTATTTTAATTCCTTCTCTTAGCAGGGGGTCTCC 421766 25 100.0 39 ......................... TTGACTACATTGGGGTTACCGGCTCCAAGCGTAATCGTG 421702 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 7 25 100.0 40 GATGCAACTAAGAAAGAATTGAAAG # Left flank : GGCCAGGCACCTCCCTCTCCTCCGTCAGCTCAAGCCTGATAAGCTTCTCGCCGAATGGTGTATCCACAAGCGAGATATTCGTGACCTTCGCCCTAAACGATATACCAGCCTCACTCATATCCATAGTAAAACCAAGCCCACCTTTAAGTATTTCTAGCACCCACACAGCAAGCCAACCCCACACCAACCAAGAGAAACAGAGACCCACCACAACACATCTAAGAGACGTAGATGCACCAAAGAAGATGCCACATAGAAACTCATAACATGCATACATTTGAAGACTAAAAGTTATTTATGAAGTTTCTCGACGAGAGGATTATTTTAAAAAGAGATTACGGGAAAACGTCCCGACCTTAAACGGGGTGTTTCGGGAAGCCTCCCGTATGGGAAGTTTCAGAAGTTTCCAACGAGTAATTTTGAGTGCTGGGGCAGTTTTGCCGACTTCTTGATAAAATTAAACGTTAAACATATCAACCGCGTCCGAGCAAAACAAATCG # Right flank : GACAAGCTCGCCGTGTATGTTGCCTTTTCTTGTAGTCCGCTAGGCAGCTAAGAAGCGCGCTAGGTGTTGTTCGGCGCAGTGCTTGTTGGAAAGATATTTTATATGTATACATCTATGTATACTTGTGGGTTCAAGGGTTGTCCCGTCAGGCTGGGTGAAGATGAGCTGAAGAAGATAGATGTGCTTGTGAAGTATGGTGTTTTTCGGTCACGGAGCGAGGCCATTAGGGAGCTTGTCCGGCTCGGCGTCAAGCTTGCCTATGTGTCTGAGGTGTTGGAGGCAGTTGAGAGGCTTTTCGAGCTCGAAAAGGTAGAGGGCAGGATACCGGTAGAGCTGGGCGGTGCGACGCGGCAGCTTCTGGAGGAGAGGGAGAGATGAGTTACATCGATACGAGCGTTGTTGTGGCTTCTCTTGATCCTCTTGATCCTCGGCGCGAGTTGGCCCTAGGAGTGCTAGAGAAATTGAGGGACAAAAGGGTGTCGGAGCTTGTGTTGGCGGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTAAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 8 432492-432773 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 432492 25 100.0 41 ......................... CGAAAAGTCCTGCTATGCAGTAGTCATTTTCGCACAAAAGA 432558 25 100.0 36 ......................... CTAATAGCAAAATCTGGTTCAATTTTCCATGTCTGC 432619 25 100.0 39 ......................... CAAGTCTATGGCATGAAAAACGACGCGCCCGTCGGTGAG 432683 25 96.0 40 .........C............... AGAGATACATGCAAAGTACCGTGTCGTACAGCCACCCACG 432748 25 92.0 0 .........A..............C | G [432770] ========== ====== ====== ====== ========================= ========================================= ================== 5 25 97.6 39 GATGCAACTGAGAAAGAATTGAAAG # Left flank : GATTTGAACCCCCGACCTTCGGGTCTGGAGCCTCGACCTCTCTAAGAGACCGCCGCTCTACCTTGCTGAGCTACCGGCCCAAAAGGTCATTTTGATATTTAGCTCGTTTGGTAATAAATTTTTCTTTACCGTGAAAGGTTGAGATTTTTCTGCGGGCTCGAGCGGTCAAGTCAGAAACAGAGCAACGCCAAGAATAAAACATTGAGGAAGAGAACTACTTGCCTCTACCAACCTCTATCGTAAATGCATAACGCCTTTTTGTCAACGTTTTCCTTGAAGGAAAACTAAAAGTTGTTTATGAAGTTTCTCGTTGGGAAGGTTATTTTGAAAAGAGATTACGGGAAGAATTCCCGACCCAAAACGGGGCATTCTGGGAAGATTCCCTGGTGGGAAGTTTCAGAAGCTTCCAACGTGTAATTTTGAGTGCTAGGGCAGTTTTGCAGGCTTCTTCAAAAAATTAAACGTTAAACATATAAACCCCACCCGAGCAAAACAATTCG # Right flank : CCACATCTTTTTCCCTTGTATGTGGGGTCGAGCTGGAGTGCGCGCACACTTGTTCTAGGGTCTCCTTTCTTGTAGGGGGTTGCCTGTGTTTGCCGGGATCTTCTAGATTGGTTTTCCAAGTTTTTCCTGGTGAGTATCTCTTTGGTCTTCTCAGGCGTGCTATATGATTTTTCATGGATGAAAGATGTTGGCGTCTAAAACTTTTATTAGCTGTCAGTGATCAGTATATTTGGTCTTAATGCATGGGGAAACACATAAGGTAGTAACTCAGAGGGCTCTTTCTTATCTTAGGTCAATGGAGTTGCCAGTAGTGTTACCAAGAAATTTTGATAGAAAGCTGGTTAGAGAAAACGTGAAGCTGGATGAGGAAGCCGAATATGCTGAAATGAGATATTTTGACTTCGAAACGGGTGGTACTAGGGTTTATAGAAGAAGGATAGCTCATCACTCAGAGAATATTGATGTTGCTTCCCAGAACTTACCATCTGATGTACAGTTAT # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTGAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.54%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 9 455592-455243 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 455591 25 92.0 36 ......A...A.............. TGTCCTTGATTTGTTCCCTTATTTCGTGTTTTATTT 455530 25 92.0 41 ......A...A.............. GTCCTCGTACCAAACCGTGAGCTTCATTCGTCCACCACCCT 455464 25 100.0 40 ......................... AGCTCAGGGATGTCGTGAACCTCACTGAGCTCGAAGTAGT 455399 25 100.0 41 ......................... GGGGACCTTCTCGGTCGATAATACAGATACAGAGAGTCTAA 455333 25 100.0 41 ......................... CTTTTAATCTGTCCAAGCAATGCTAAAATCTTTCGAGTTTT 455267 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 6 25 97.3 40 GTATCAGAAACGAATGAATTGAAAG # Left flank : CTACGCCTACCTTCAGGGCTACATCTAACCACACATAGAGCTTTGCATAGATGCGGCTCAGAAAGAATTAATGCACCTCTACGTTCCTCCACGTACCCGCTACCCGACAATAAGCCTACACCACACAAAGCTGTACATCCATAACGACCACACAAGCGTTTCGGAAAACCAGGAAAAACCCCTCGCTCCAAAATTAAAAATATACGAAAGTGAAAAACAGAGATTTCTCCATTGTGATACGGGTTGGGAGGAAATGGTTCCCCTGGAAATCTCTGTAGAAACGTTTTCCACGGGAAACTTTAACGCTTTACGGGAAGAAGCCTTTTTGTAAAATACACTCTTCCCTAGACCCTCTTCCCGTTCCATATCATTTACATGCAACAACGAGGAAAAATAAAACAAAATTAATGTACTTAACGAGAAACACTTACACAAAAACACTTTCACCCAACACCAAAACAAATAAATAACACCCCAACAAAATAAACCCCAAGGAAACA # Right flank : GTCAACTTTGCTGGCGGCTGATATGTCTTTTTTGCTGTGCATGCATTTTTTCATGGTACTTTCGGGTTTTCCATTTTTTTCTCATGCAAAGATTTTTATTTCTGCGTAGGTATTTCTCGGGATGACGGTATATTCTCTGGAAGCATCGAACGGGATTGCTGCCCAGGTGGCTAGACATCTTGGAGATGAACTCGTGTTCTTGGAGAAGAAGACTTTTCCCGACGGCGAGGTCTATGTGAGGGTTCCCTCGAAGCCTAGGGGCGTAGCCATACTTGTCTCATCAATGTATCCTAGCCAAGAGAAAAGGTTCTTAGAGCTGTTATTCTCGGTGGAGGCCCTCTCTGCATACGCGGAGGGCAGTATAATTGCTGTTGTGCCGTATCTGGCATTCGCTAGGCAGGATAAGCGTTTCCTGGAAGGGGAGCCGATAAGTGTCAAGGCTGTCTTGAAGTCGCTGGAGGCTCTCGGGCTGTCCGGCCTTGTCACTGTCGACCTCCACC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAACGAATGAATTGAAAG # Alternate repeat : GTATCAAAAAAGAATGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 10 468086-467214 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 468085 25 100.0 38 ......................... TGAATATGACAGCGTGTCCCTGACGCATCAAGAGTTGA 468022 25 100.0 38 ......................... TATGCAATAGGACTTTTAATGAGTTCTCAGATTTCTCT 467959 25 100.0 37 ......................... TGGAAGAAATAGTAATCAAATCTTTTAGCCAGGTAGA 467897 25 100.0 39 ......................... AACTATATTAGGCTTAAGAGTGCAATCCTAGACCTCGAG 467833 25 100.0 40 ......................... TCTAAAAGAGTTTTTCGTTCCTCGAAGTCCCCAACCTCCA 467768 25 100.0 42 ......................... GCTTTTTTGAGGATGTTGAGCGCGGCATTGATATCTGAATGA 467701 25 100.0 43 ......................... CCTCAATATCGGTCACGGTTAGTATCAGGCACGCGGAAGCCCT 467633 25 100.0 37 ......................... TTATCGCTTTGTAGAGGTAAACAAGTCTCTTTTCAGT 467571 25 100.0 46 ......................... TTGCCAATGCAATCTTTTCTCCACCCACGACGCCGAACTCGCCTTT 467500 25 100.0 38 ......................... GCTGATGTGATGCCCAGCTTTGGAATAAACTCTGACGG 467437 25 100.0 41 ......................... TGTTTATTGCCCCCTCCGTGTAGCCCGCTTTTTTCAGCCTC 467371 25 100.0 44 ......................... ACATCGCGTAAGACCCTCATTCTCTTTAAGGCCTCCCACTTTGG 467302 25 100.0 39 ......................... AGAATGGAACCACCGCAGCTTCCAAAGCCGCCGCCCCTA 467238 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 14 25 100.0 40 GATGCAACTAAGAAAGAATTGAAAG # Left flank : TACAAGGATCATCATTGCATTGTTAGATACGTAGAGACCTATTTAAAACGAGCGCCCCCAAAACAACAGTCCACAGCCACAGCCTCCCAGGATCCACCACTCAAAAACGAAAACACACGGCCATCCTAAATCAAAACCCAGATAGCCCGAAACCTCCGACAGGAAACATTCAAGTGATTAGTCAGACCCAAACAGGAAAACTCACCCCTCCAGTTCTCCAAGTATACAAAAGCCTTCTTATAAACCAAAATAGATTTTTGTCAATATCTTCCTTAAAGCCAAACTAAAAGTTATTTATGAAGTTTCTCGTTGGGAAGGTTATTTTAAATTTAGGTTTACGGGAAAAATTCCCGACCTAAAACGGGGTGTTTCGGGAAGTTTCTCGATAAGGAAGTTTCAGAAGCTTCCAATGTGTAATTTTGAGTGCTAGGGCAGTTTTACAGACTTCTTGATAAAATCAAACGTTAAACATATAAACCCCTCCTGGGTAAAAAATTTCG # Right flank : ACGAAGTATCAAAGTTGTTTTTGTTTTCCCGGGGAAAAGGAAAGCGGGCGAGTGGAGCGAGAATGACTAGACTTCCTCCATTTCTGTTATAAAGTATTTTCCATCCATGGTGGGTAGCCGTAGCGCCAGCCAAGCCTTGATCTCTAGGCCTACCTGTTTGTCAACGATGAGTTCGACTCTTTTGCCTCCTAGAGCGTTCTCTGTAACCTTTGCTTCTACGTTGTAGTCTATTAGCCTCTTGCGTAGCTCTTTCCTGTAAAGAGTGTATGGAAAATTAAAGTACATCTTGTCGCCTGTCTCGAGGATAAGTATCTCCTCGTCCATCAAAGGCCAATCTCCAACGGTTTCCACGGAGGCTTTCACCAACACTTTTTTCGCCTACATCGCATAAAAGACCAACATTTAAGATAAAGAGCAAAAATAAGTGAACAAAATAAATACTCAAAGTTTCCCGGGGGCCAAAACTATAATAATGCACGCATATTTATCCCCGTGCCTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTAAGAAAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 11 570854-570165 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================== ================== 570853 25 100.0 42 ......................... AAACAGCTGCTTATATAGATCTATACGTTCTACCATAGGTCT 570786 25 100.0 38 ......................... GTTATTTGAAGATTGGGCGAGTGCCGAGCGGAAGATAG 570723 25 100.0 40 ......................... TTTTCTGTATTTTTGTTGTATGGACTCGAGGAAAAAGGCG 570658 25 100.0 41 ......................... TTCTTCAGCGTGCCGCCTTTTTCCGCGGGCACAGTGAACAA 570592 25 100.0 41 ......................... GTGTTCATCGTGACCGCAATTATTATTGCCTGCCTGGGAAT 570526 25 100.0 42 ......................... CCTCATTATAGATACGGATCTTCACATATATGCCCCTTATGT 570459 25 100.0 40 ......................... CCGCCAGTGTATGTGAAATTCTTAAGTCATACGTATATAC 570394 25 100.0 41 ......................... AAATAAATTGATGTCTCTTACCGTCTCCCAAGTACCATGAC 570328 25 100.0 39 ......................... GACAGAGAGTTGGGCATAGTAAGGGCACCCATTTTGCAT 570264 25 100.0 50 ......................... AAGCTGTAGCCATTCCCATCGAACAATATAATGCTTTGCCATTGATTGTT 570189 25 88.0 0 .....................GGT. | ========== ====== ====== ====== ========================= ================================================== ================== 11 25 98.9 42 GTATCAGAAACGAATGAATTGAAAG # Left flank : CACCCATCCCTCCTAGACACCGCGTTCATCTCGTTTGTAAAAGGCTACCGTGAAGCCAGAGGAAAAGAAAAAACCACACAAATACTACGGAAAGTAAAAGAAATACGTATGCGCGGCAGATACGTACGTGAAAGAAAACGTTCAACATCTCCAGACAAACCCCAATAGCCCTCTATTTTCCAAAGAGACATAAAATAAAAAATCATGAAAAAGAAAAACAGAGATTTTTCCATCGTGATACGGGGTGGGAGGAAAGGGTTCCCCTAAAAATCTCTGTAGAAATGTTTTCCACGGGAAGCTTTAACGCTTTACGGGAAGAAGCCTTTTTGTAAAATACATTCTTCCCTAGACCCTCTTCCCGATCCATATCATTTACATGCAACAACGAGGAAAAATAAAACAAAATTAATGTACTTAACGAGAAACACTTACACAAAAACACTTTCACACAACACCAAAACAAATAAATAACACCCAACAAAATAAACCACTGGGAAACA # Right flank : GGATTGGTGCGGGGATTGTTTTACATGTGCAGAACAACAAAGAAATTTATTTTGGAGCCCCAATAAGGTGAACCATGAGTTGTAGGCGTGCCTTGTTCCTTGGGCGCTTCCAGCCCTTCCATAACGGTCATCTGGAGGCGTTAAAGTGGATTCTTGAGAGAGAGCCCGAGGTGGTTCTGGCTATTGGTAGTGCCCAGTATTCGCATAGTTTCAGGAACCCGTTTACGGTTGGGGAGAGGCTGGAAATGATTCAGGCAGTCCTGAGAGCTGAAAATCTTGCTGACAGGGTTATGGTCAGCGTGGTCCCCGACACTGACAACGAGCATTCTCTCTGGGTGAGGCTTGTGGTTAGCTGGTCTCCCTGCTTCGACAAGGTGTACACGAATGATCCCTTGTCGCAGTTGCTTTTTAGGGAAGAGGGTTTCCAGGTTGAGGGGATACCGTTTCACGAAAGGGAGGTGCTCGAGGGTACACGTATCAGGAAGCTGATGGCCGAGGGT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAACGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 12 622460-620734 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 622459 25 100.0 43 ......................... GCAGCGGCACTGATTTTGGGGACATCGTCACGGGTAAATGACT 622391 25 100.0 37 ......................... GCGATTATCTGTGTGGCGTCCCCGGCCTCACCCTGTC 622329 25 100.0 40 ......................... AATTGCTATTTATCTCTGGAAACTTCAAAAGCCAGAAATA 622264 25 100.0 37 ......................... CGATTTATCGAGAAATATTACTGGTTTCATAGCTGTG 622202 25 100.0 41 ......................... ATTGACTGCAGTGTTTCCCTATATTCCTCAACCCTTGCGTT 622136 25 100.0 39 ......................... TCACATACGCGTATACCTTGGTCATCCCCATTAGCCAAC 622072 25 100.0 41 ......................... ACTTGATAATCCTATAGGTGATGCTTATAAGTCCTAGCGCC 622006 25 100.0 38 ......................... ATGCTTTCCCCATCTGCTTTCTTCAAGAGGCCAATCCT 621943 25 100.0 41 ......................... TAGATTGAATCTAGTTTGAGGTGTTGAACCATTTTCCCACA 621877 25 100.0 41 ......................... CGAAGCTGGTAAGGGATAGGTCGAGCTTTGAAAATTCTAGC 621811 25 100.0 40 ......................... TTGCTTTAACAGCTTTCCTAGCTTTCTTTGCCTATTCATT 621746 25 100.0 40 ......................... ACACCATGCCATACTCGTATTCCTTCCCGTCACGCCTCCT 621681 25 100.0 39 ......................... CTTTGAAAAAGCAAAGGCAAGTGACCCAGACTCGCTTGA 621617 25 100.0 41 ......................... GGAGCCTCTCCATCCTCAACTGGAACTCCTTAAGCTGTCTG 621551 25 100.0 44 ......................... AAGAGGATGTAGGCAATCAATTGCTGTGTGCTTTGCCTCGTTAC 621482 25 100.0 37 ......................... GCGTATAAGCGGATACAATTCCTCCCCTGCCACTTCT 621420 25 100.0 38 ......................... TACTTGAAATTACACCTGCTAGAAAAGCAAACATGGTA 621357 25 100.0 38 ......................... TGAACGAAGTGGCTACATAGATTCCACGCCCCAGATTA 621294 25 100.0 43 ......................... TAGGGTCCTGTGTGGGTTCGGCGGGCGTCGAAAACGATATCGA 621226 25 100.0 40 ......................... GTTGTTCTTCGTGACGCTCGGAATAATCCATGCGCTCGAC 621161 25 100.0 42 ......................... TTGAAAAAAGAGGTGCAGAAAAATGTGGTGGATATACGTGCT 621094 25 100.0 42 ......................... AATTCTATTGTACACTATTCTGCCTGTGCTGTCTGTCTGTAC 621027 25 100.0 45 ......................... GGTGCTAGCACTGGCTGGAGCTCGTGCGGTGTGAAGAATATGTGT 620957 25 100.0 42 ......................... CACACGAGTGTCTGCGGGGGACTCGAGGGCGCGGAGCCACCT 620890 25 100.0 39 ......................... ATGAATAAGGACATAAACCAGAAAATAAGTGTTTCCGAT 620826 25 100.0 42 ......................... CGAAGCCGAAGCCGAAAATAGCGAAGCCGAAAATCAAGAGCA 620759 25 100.0 0 ......................... | A [620736] ========== ====== ====== ====== ========================= ============================================= ================== 27 25 100.0 40 GATGCAACTAAGAAAGAATTGAAGG # Left flank : CTATTCTGACAACAGTCAACCTAAACATAGACAATCTATTTTTTTCTTTTTACTTTTTTACTATTGGATTATTCTATGATCCTTTACACCGAAAACCATCTAGGCAACCAGCTCTACAAGTCTTCTCACAAAAACACTACAAATTCCACAATAAATCTTTAGAATAACATCTCCTATTGCACAGCTTAGGCTCATAGCATGCTGAACCTCACAACCAAGGAACACACCCATATATGTTCAACTACATTGAAAGCAAAGTAAGTCAATGTTTTCTTTAAGGAAAACTAAAAGTTGTTTATGAAGTTTCTTGACGAGAGGATTATTTTAAATTTAGGTTTACGGGAAAACTTCCCGTCTTAAAACGGGGCGTTCCGGGAAGCTTCCCTACTGGGAAGTTTCAGAAGTTTCCAACGAGTAATTCTGAGTGCTAGGGCAGTTTTGCAGACTTCTTGCAGGAAAAAGCATTAAACATATAAACCACACCCGAGTAAAACATTTCG # Right flank : TGAAGACGCAGGGCTGTTTTTGAGTACTGTGAATTGGCTTGTAATAATTTTGTTATGTTTGTGTATAACTTTGTTATTTTTGTTTTTCTCTGTTTAAAATACATGTAATAACATTGTTATCATAAATAATAACGATATTATGCTATGTGATAACTTTGTTTTTATGGCTTTTCTGCTTTTTGGTTCTTGGATTATGTAGTTTTGTTCTTGAGTCGCTTTTCTGGGTCTAGTTTGTTTGGGCAATGTGTAGCGGGATAAAAGACGAATAAGTGGTGTGGCGAAGTATGTTTTAGGGGATGGTTCCAGGAGAGGATGGGTTGAAAATTGTGTGGGTGGCTGGTGGGTATGCGGATTAATGGCACTGTTGGGGCTGTTTTTTAGTGAGTTTTGTAACGCGTTTATCAAAGGGTCATGGTTTGGTGGTTCTCTAATATCAACGTGAATTTTCGATCATTACGAGTCCACTGAGCTACAATGGAAGATAATGTCGTGGGTGTCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTAAGAAAGAATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 13 633479-632340 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 633478 25 100.0 40 ......................... ACAGCTGTGTGAAGCTTCGCTTGCACCTCGGAGCCAGTAA 633413 25 100.0 36 ......................... AAATGGGCAGATTAAGTATGCTAGGGCTGACATTGA 633352 25 100.0 37 ......................... AGAAATAAATGGATACAAGATAATTTTCAACACCTTG 633290 25 100.0 39 ......................... GTTATCCATTCATAAATAAAGCTGCGCAGCTGTGTTAGA 633227 25 100.0 38 ......................... TCCCCTTCGTCTCTGCGACCGCGAGGATGCTGGAGAGG 633164 25 100.0 39 ......................... ACCATAAAGTGCCATTGAAACCTGGTCGGCAACGTAGAA 633100 25 100.0 41 ......................... AGGTGTGGAAGGGGCCGTGATAGTCTCTTCCATCATACAGT 633034 25 100.0 39 ......................... ATAATGTATATTTGGGGCTGGTCCTCCCCTGCCCCGGCT 632970 25 100.0 43 ......................... ACTAAAAGCAATTACGGCAGAAATAGAGGACATCAAGCAAGCC 632902 25 100.0 40 ......................... AATGCTTCCATATGTGAAAAGTTGGCTTACGGTATAATAT 632836 25 100.0 45 ......................... GCGTATTGTAGAGCCTTGTCTAAGTCCTCTTGCGTGATATACCAA 632766 25 100.0 42 ......................... AACTTTTTCCTGATCGCCCTTGTCCTCGGCCTCATAATCGAG 632699 25 100.0 43 ......................... CGATGCAGAAATCACTGCGGGACAGGGACATCGAAGAACTCGC 632631 25 96.0 44 .........A............... ATTTGTAGTTCAGAAGAAAGTACTCGAATTTTCTAGGATTTCCG 632562 25 96.0 42 .........T............... ATTGAATTTGTTGAGGTAACAATAACATCGATTGACACCCTA 632495 25 92.0 40 .........A.....A......... ATTGTTATCATGATGGCGATTGCGGCCTGTATTAGCTGTA 632430 25 96.0 41 .........T............... CTCTACCGCTGCCCTTTGAAAACATTTGCTCAATGTATTGG 632364 25 88.0 0 .........G.............AT | ========== ====== ====== ====== ========================= ============================================= ================== 18 25 98.2 41 GATGCAACTCAGAAAGAATTGAAGG # Left flank : GAGCTCATGAAGCTATACGTCGAGCTCTTCCCACATAGACACGTCGTCCCCAGGATCCTCGAGGGCGGAGCCGTGCCACGCCAAGAATTCGAAGCATTCAGGCAAAAAGCAGGCAAAACACCCAGACAAACACTAGAAGCATTGGCAGAGATCTACACATGCCTAGAAAACAGAGAAAAACAGACAAGCACGCCCTAGCTACCCCTAATTGTCCTTGTAGCGACACTGTCACCTTGCCAAGTTAACATGGATAAGTTTTTGTCAACTATTTCCCTATGTGCAAACTAAAAGTTGTTTATGAAGTTTCTCATTGGGAAGCTTATTTTAAATTTAGGTTTACGGGAAAACGTCCCGACCCAAAACGGGGTGTTTCGGGAAGCTTCCCTATAGGGAAGTTTCAGAAGTTTCCAATGTGTAAATTTGTGTGCTAGGGCAGTTTTGCAGACTTCTTGAAGGAAAAAGCATTAAACATATAAACCATGCCCGAGTAAAACATTTCG # Right flank : TAAAGTCTTGGTTTTTGTGTAAGTTTTGGGGTGGTTTTATTTGGTTTTTTGTTTGTGTTTGTTCTTTCGGTTTTTTGTTGCTGTTTGTCCGTCGCATTTGTTTAGTATTCCTGTGGTTGCCTCGATTAGTATGTTCTCTGTTTTGTATGTTCCTATGCGGAGAAGGTTGTTTCTTAGGTTTGGTAGTACTCCTAAGTCTATTGGGTTCTTGTTTAGGGTTTTTGCCGTGGTGTCTAGGATTTTTGATGCGATGGGGGTTTTGATGAATTGTTTTGCGTTGTTTGCAAGTGTGTTGATTTGTTTTAGGCATTCGTCTCCGATTGATATTGTTGGGCGGATTGGTTTGAGGACGCTGTATTCGCTTGTGATCTGTGAGTAGTGGTGTAGTAGTACTGGTAGGACAACTAGTGCCAGGAAGATATGTCTCGCCTCGAGCTGCGTATTTTTTCCAGCTAGGAGTTGGTTGAGGGTGTCCTCTATGTTGTCTGGGCTTAGGTCGA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTCAGAAAGAATTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 14 647263-646569 **** Predicted by CRISPRDetect 2.4 *** >NC_022093.1 Thermofilum adornatum, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 647262 25 92.0 39 .........A.............A. AGCAACGAGCTGCGGGGTGCTCCCGAGCAACTGGACTGT 647198 25 92.0 45 .........A.............A. GCTACTAGCACCGCGTCGGCGGGTAGGTCAACGCCCTCTGACCAG 647128 25 92.0 42 .....GG.................. ATCAGGGTAACCTTCTCGGCTCGGCCCAGACCGCTCAGCTTA 647061 25 100.0 42 ......................... TTTGAGTATCCCTCGTTTTCTAGGTCGATGCCTATTGCGCGG 646994 25 100.0 39 ......................... TTCTTCGCTAACCTCAGCGTCAAGGCGTCAGCGATATCG 646930 25 100.0 40 ......................... GTCGAAGATAACCCAGACCATAGAGACCAAGGCGCTTAGG 646865 25 100.0 40 ......................... AGGGCCAGGCCCTCGGCCACCCCGAGCCAGAAGCCTTTTA 646800 25 100.0 40 ......................... CCTCTAGAAACAGCCTTGTCCATCTCTCTAATTGTTGCCA 646735 25 100.0 41 ......................... AAAGGTGTATCCATTAAATGTTGCATGAATCGGAAATTGTT 646669 25 96.0 51 .......................A. TGCGTAAGGTGACCTGAGGAACCTATAGCTGTATCCATGCCTGTTTATCCT 646593 25 76.0 0 .G.T.....T...........TT.C | ========== ====== ====== ====== ========================= =================================================== ================== 11 25 95.3 42 GATGCAACTCAGAAAGAATTGAAGG # Left flank : TCCCACCCCTAGCCATAGGCGTCCCCCCTACCCACGCCGAGCATACTACTCTTGGGGGTCATCCCTCGTGCTCGGCGTGTACACTTGGCCCCGAGGGGTGCATGTTGCCCAGGGGGCCCGAGACGAGTGCCGCTGGTCACACGCCCACGTGTGCGGGCTCGAGCGGCCAGACTCGAGAGAAAGTTACCGAATACATAAAACATGGAAAAAGGGAAAATCTTCACTGCGACCACCTTTTATGGCAAACGCACGCCGCTTTTTGTCAATGTTTTCCTTAAAGGAAGACTAAAAGGTGTTTATGAAGTTTCTCGACGGGAAGGTTATTTTGAAAAGAGATTACGGGAAAACTTCCCGACCCAAAACGGGGTATTTCGAGAAGCTTCCCAATTGGGAAGTTTCAGAAGCCTCCAATGTGTAAATTTGAGTGCTAGGGCAGTTTTGCTGGCTTCTTGCAGGAAAAAGCGTTAAACATATAAACCCCTCCTCGGTAAAACAACTCG # Right flank : TTCTTTGTTTTGTTCTGGATGAGCTTCGATGAGTGTCAGGTATGTGTGTTCCGTGTTTGGTGCGCGGTGCAGTCAGTTGTGTTAGGCGTTTTGAACATGTGCTAGGGATGGCACAAATGTAATACTTTTATCTTACAAATATTATCCCTGTGGTTATCTTTTTAGGATCATCCTTTAAACTAATACTGTTGAAAGGTAATGGTTGGTAAAGCTTTTTGCAAGGGTGTCTCTGCAAGGATAGCAAAAATCGGTAAGAGGAGCATGGAGCTTGTCCGGTGGCAACATGTTAGCTTAAGTGTCTTTGTTCTTGGGGCAATTATACAGTTTTATCTTTTCCTTAAAGAGGCGGGCCCGCTCGCTGTTCTTAGTTTCATGCTTGCACTTCTAATTTTAATTATAGAGATAGCTGGTAGAGTAATCATCAAGGAAAAAATAGAATTCAAGATTCCAGGTTCAATCATGAAATTGGCTGGTAAAATAATCCAAGGGTTACGAGTTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACTCAGAAAGAATTGAAGG # Alternate repeat : GATGCAACTAAGAAAGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //