Array 1 88311-92371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQH010000032.1 Clostridium sp. MSJ-8 Md-8-1_ctg0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 88311 30 100.0 35 .............................. TAGCAATGGTAAAGCAGAATGGTTAATAAAGAATA 88376 30 100.0 36 .............................. ATGGATATGTTTCCACTAGAGATGGATAACGATTTA 88442 30 100.0 37 .............................. AATTATTATTCTTTATCTGAGGAAGAAAAATTAAAGA 88509 30 100.0 36 .............................. GCTTCTATGTGGTAGTATGGTGTTTCTTTTTTGCCA 88575 30 100.0 37 .............................. TACTGTTTTAGTTGATACTAGAGAGCAGAGAAATCAA 88642 30 100.0 36 .............................. GCCGATACGATAGAAGGTCAAACGAATGATATTTAT 88708 30 100.0 36 .............................. TACACTGATATTTCTAAAGGTGATATTTATAATGTA 88774 30 100.0 37 .............................. AATATTGAAAGGTTTAAAGTATATTATCAAGAAATGG 88841 30 100.0 37 .............................. GTACATTAGATGAATATACTCCAGAAGAATTAAAACA 88908 30 100.0 35 .............................. GTGCAGCAAATGACAGATGAGCAGATAGCAACAAG 88973 30 100.0 35 .............................. TTATATCGGATGTAACATTTTCTATTGGTAAACTT 89038 30 100.0 36 .............................. GAAGAAATAGGTGTATTTAATGTAGCTAGTAAGCCA 89104 30 100.0 36 .............................. TCTGTCATTGGTATAGTACTTGTTTGATGATTAGCC 89170 30 100.0 35 .............................. CCATCTTGTCTTGACTTTCTACTGTAAGACTTGTT 89235 30 100.0 37 .............................. CATTGCACTCCCTCATTTCTAAAATGGCATATCTTCA 89302 30 100.0 35 .............................. TAATGCCACTAATACAAAGCGATTAGTAAGCAACG 89367 30 100.0 36 .............................. TTTAAAGAAAGGGTGATACAATTGGCAAGCACAAGC 89433 30 100.0 37 .............................. GTATCCAAAAGTAATTGGGTATACAAAAGATGGTTTG 89500 30 100.0 37 .............................. TTGATTAGCAAAGATTACAGACCTTCTCAGCGACTTG 89567 30 100.0 35 .............................. AAGCCATTCGTTAGAGCTTATTAGGGGGTGTCTCA 89632 30 100.0 36 .............................. AAATATTCGGAACTTTAACAAATATTATTAGCAACG 89698 30 100.0 37 .............................. GTTTCTATATATAGATTAATTACAGAGTTCAACGCAT 89765 30 100.0 36 .............................. AAATTATTAGGAGCAGGAGTAGCACTAATTGAAAAA 89831 30 100.0 37 .............................. AGCAACAAGCAATGTAGAACAGAACAGTGGAAAAATG 89898 30 100.0 36 .............................. TAATCACACACCACATCTCTAACTTCATATTTCATT 89964 30 100.0 36 .............................. ATACAAAGAGCCACAACAGATAATAACATCACAACG 90030 30 100.0 36 .............................. CTCTTTAGAGAGGAGTTGATAAGATTGTTTTTATTT 90096 30 100.0 36 .............................. AAAGTAAAGATTAAAGAATATCCTGTAATGCTAATA 90162 30 100.0 37 .............................. CTAATAAAAATATGTTAAATTATACAATACTACCAAC 90229 30 100.0 37 .............................. GAAACTGTAGCAGAGTATAAAAAGCTTAGTAAGGCAG 90296 30 100.0 37 .............................. ATATATTATAAAGTAAAATTCAGAAAACCAGATGGGA 90363 30 100.0 37 .............................. TTAGAGGTATTCCCATCCTTATCTAATACAAGTTGGT 90430 30 100.0 35 .............................. AACGCTAAGCGAGAGTTTATTGAATATGAAATAGA 90495 30 100.0 35 .............................. TTTTTTAATATAGGGGAAGGGGGAAAACCCCTTCA 90560 30 100.0 36 .............................. GGAACACTAAAACTAAAACCAACCTTTTCTAAAATT 90626 30 100.0 36 .............................. ATTATATGCTAGAGATTAATTCGTTAAAGAGATATT 90692 30 100.0 36 .............................. GTAAATTATTTTTAAATAATTTATATGGTAAGTTTT 90758 30 100.0 35 .............................. GTGTATCCAAGCTCATTTGCAACATCAATAGCATC 90823 30 100.0 37 .............................. TTGAATTTATTCCAAATTTGATACCTTCTCTGTATGT 90890 30 100.0 35 .............................. GTAAATCTGGATTATCTTGTTTAGCCCTAACCCAA 90955 30 100.0 34 .............................. TTCCCTTCTTATTCTCTTCTTCTCTAGCATATGC 91019 30 100.0 37 .............................. TTGTTTCTGCAATAAACACTTATATAATTCAATACAG 91086 30 100.0 37 .............................. TTCTAATTCTCCTTTCTACATTACCATTACATCTGCT 91153 30 100.0 36 .............................. TCGAAAAGTAACATTCCCGTAGCGTTTATATTTATC 91219 30 100.0 36 .............................. AGGTTTACACTAACTAATAGCTTTAAGAAGAACGGA 91285 30 100.0 34 .............................. TCTTCTTGTCTCCTCTTATTTTCTTAAGTTCATA 91349 30 100.0 37 .............................. CCACGTAGTTTATACAATAGAGGATATAGGAGACGCA 91416 30 100.0 37 .............................. CACCTTCGTATCTCATTACTTTATGTTTAAGACCAGA 91483 30 100.0 33 .............................. GAGACTTAGATTATGAAATCGCAGGATATGACC 91546 30 100.0 37 .............................. GTATGCACTAGCTAATGGTTATAACAAAACTACGCAG 91613 30 100.0 37 .............................. CTTGAAATTGCTTATCACTTTCTTCTCTAGTAATCTC 91680 30 100.0 35 .............................. TGAGTGAAGATGACGAAGATAGCGAGAAGATATTA 91745 30 100.0 37 .............................. TTGTTTCTGCAATAAACACTTATATAATTCAATACAG 91812 30 100.0 36 .............................. TATATCACACCTTCTATTCTTAATTGATACTTATTA 91878 30 100.0 36 .............................. CTTTTTATTACTTGTAACTGTAAAGGACATATATGT 91944 30 100.0 36 .............................. TAGCATTTAATACTTCAAAGTTACTTGTATAACCTA 92010 30 100.0 37 .............................. TGTTTTGCTACTCTTGAATTAGATGTTGATATGGTTA 92077 30 100.0 37 .............................. CAATCTCAAGAAGTGTGGTTCGGTAGCGAAGAAGAGA 92144 30 100.0 36 .............................. GAAGAAATTGTAAAGGAAGGTGAACTTTAATGAGCG 92210 30 100.0 35 .............................. ACACAATTTATACTGTCTGCAATGATGCAGCTAAG 92275 30 100.0 36 .............................. AAGTTTAGAAACGGCTTACAGGTAGATGAAAATGGG 92341 30 86.7 0 .....................GG...T.G. | T [92362] ========== ====== ====== ====== ============================== ===================================== ================== 62 30 99.8 36 GTATTAGTAGAAACATATTGGAATGTAAAT # Left flank : ATGAACCATTTAAGATATGGTGGTAAGGTGAAAAGTATGTATGTAATTTTAGTATATGACATAAAAGGTGATGAAAAAGGGCAAAGAGTGTTAAACAGAGTTTTTAAAATATGTAAGAGATATTTAACCCATATACAAAATTCTGTTTTTGAAGGAGAGTTATCAGAATCTCAAATTCTTAAGTTAAAATATGAAATAAAAGGTGAAATAAGAAAAGAGCTTGATTCAGTTATTATATTTAAAAGTAGAAATCAAAGGTGGTTAAGTAAGGAGATGTGGGGAATAACTGAAGATAAAACAAGCAATTTTTTATAGTTAAAAAATTGTCTACCTAAGAAAGTGAAAAAAGTAGTAGGGTATGACAATTGGCTTAATATCTATAATTATATAAGATAAAAGAAAAATATCTTGAAAAATATATTATAAAAGTTTATCCTAGATTTAAGGTAGACAATATAGGGAGAGCAAATAATGCAATAATGAGTACTCAAATTAGACGT # Right flank : ATAAAGTAGTGGACACATTAAGTCAAACTAAGTAAAATAATATTTAGTTAAGAAAGGATGTGTCCATTATGGGAAAGGGCAGAAGATATGATCAAGATTATAAAGATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGAAACATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 163-2511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQH010000016.1 Clostridium sp. MSJ-8 Md-8-1_ctg0015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 163 30 100.0 37 .............................. CTTGCTATTCCAATCAGTTATGGATTATATGAAGTTG 230 30 100.0 35 .............................. TAAATTCTTTCTTATTAATTAACTCACCGAATGTA 295 30 100.0 37 .............................. CCTAAGTTTTTTTCCATTGTCTATATCACACCTCCAT 362 30 100.0 36 .............................. GGTGCAACAATCCACTCACTTTTATCTCTTGTTTTA 428 30 100.0 34 .............................. GCTAAGCAAGCTGTTGCTTACGATTTTGTTGAAG 492 30 100.0 37 .............................. GATTATTATTTTTCGGATACTAATTTGATGAAACATG 559 30 100.0 37 .............................. GCGGTATTAATTGCAGCAGCTATAGGAGTAGTTGTAG 626 30 100.0 37 .............................. TTGCTTGGTGGAAAAAATTCTAAGATTGAAATAGATT 693 30 100.0 36 .............................. ATAGGCGATTATAAGGTTGCTGTAGGCGATAAGTTA 759 30 100.0 36 .............................. TCAGATTAGAAATCTTGATAAGGCTTGTTTGTATCT 825 30 100.0 37 .............................. TTGCTTGGTGGAAAAAATTCTAAGATTGAAATAGATT 892 30 100.0 36 .............................. ATTATAGATTGGACAGAGGCAGAAATATGGGAATTT 958 30 100.0 38 .............................. TTAATGATGCAAGCACTAACTTACTATACTTAAATGCA 1026 30 100.0 37 .............................. TTGGAATACTGCCGTTTGTGAAGAATTGGGTATAAAG 1093 30 100.0 35 .............................. CCTTTTTATTGTTAAAATATACTTGTTCACAAAAC 1158 30 100.0 35 .............................. TTAGAATAATCAGGAGGGGGTTTCCCCCTTCCCCC 1223 30 100.0 37 .............................. TGTGAATTTGCTTTTGCATCTGATGAACGAAAAGATG 1290 30 100.0 36 .............................. TGACGAATTCGGCGAGATTCAAGAGCATTAACCAAA 1356 30 100.0 37 .............................. AATGAAGATGAAAGTCACAAAAAAGCTTTAGAGTTAA 1423 30 100.0 36 .............................. TAACATATAAATTATCTTTTTTCATTTGTGTTTTCG 1489 30 100.0 35 .............................. AGAAATCATAGAGGATTATATAGCTTCCATCTACT 1554 30 100.0 37 .............................. TATATAAATAAATGTGTTGGATATTGTGGTTGTGAAA 1621 30 100.0 37 .............................. ATATGAACTCATCAAAAATTATCTTATTGACTTTTGG 1688 30 100.0 37 .............................. TCCACAAAATAATTTAGAAATGAGCCAAATTATGACA 1755 30 100.0 37 .............................. TTTGTGTTATATTATATATATAGCACAAACTAGCACT 1822 30 100.0 36 .............................. AGCTCTGCTAGATAAATCTTCTCTAAGCTATAATCC 1888 30 100.0 37 .............................. AGATTGTATAAAAGTTAAAGAAGAATTGGATAAAACA 1955 30 100.0 37 .............................. ATGAAAGCGACGTAGTAAACTATGTACAAGCAAATAG 2022 30 100.0 36 .............................. GGATAAATAGATCCTATTTTAACTTGTAATTTATCA 2088 30 100.0 34 .............................. TATCGAAAACAGATTAGATTTACGGCATATGATG 2152 30 100.0 36 .............................. AAGGAAAATCAAATTTTACTGTTAAGAACAGACATT 2218 30 100.0 36 .............................. CTGCGTCATAGATGGTAGGGATATCATTATTCAAAC 2284 30 100.0 36 .............................. GAAGTTGCGGCTGAATAATATGTTAGGTGACAGATA 2350 30 100.0 36 .............................. GGGACATATTGTCATAGAAATTGGGGATATGAACTT 2416 30 100.0 36 .............................. ACTATGTTATCCCATATTTCCTTATTACTATTAAAT 2482 30 93.3 0 ......A...G................... | ========== ====== ====== ====== ============================== ====================================== ================== 36 30 99.8 36 GTATTAGTAGAAACATATTGGAATGTAAAT # Left flank : TCTTATAAAAATTATAACTTATTTCAAATATTTTAGCTATAAAAACAATCTAAAAAACTGACTTTACCCTTGCAAACACAATAATTTAGCTAAAACGGAAGTTAGTTTTGCATTCAACGTGTAAATGTATATCCAAGTTCATTTGCAACATCAATAGCATCTG # Right flank : TATAAACTATGTTATCTTATAATAATTAATTAAGGTTTTAGATATTTAATTAATTTTGCATAATACTTAAAAGACAATAAAAGGTGAAAAAAGCACCCACAATAGTAGATGCTTACACACTTTCTCCTAGCTTTTCAATTTCAGCAAGTTTAGGAGAATTATTTATACAACCTTTCTCTAACATATTAGGTACAGTAATTATACCTACATTGTTCCATTTTAAATAAGAAGTCATTGCTTTGTATTGAGCAATAGCAGCATCGAATACATTATCTGCACCAGCATCTAATAATAGTGCTGTTTTGTTAAAGTTAAAACCTATACTTCCACAAGCATATAATCTATCTATAACTGTTTTTAACTGAGCTGTTATATCGAACCAATATATTGGTGAAGCAAATACTACCATATCAGCTTTTTTTAAGTTTTCCATTATATCTTTCATATCATCATTTATTATGCATTCACCAGAGTGCGAATAACAATATCTACATGCTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAGTAGAAACATATTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //