Array 1 247066-244813 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJI01000005.1 Escherichia sp. E1V33 1V33_5_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 247065 28 100.0 32 ............................ ATCCCCGGAACGGTGCGCGTGTATGAGGAAGC 247005 28 100.0 33 ............................ GCTGAACAGCAGCGCATGGCAAATCAGACCGAT 246944 28 100.0 32 ............................ TGGTCCGCAACCTGGAAGCCACTGGCAGCCCA 246884 28 100.0 33 ............................ GTTCGAATTTAAGGCATTCGCGGCGGGTATCGT 246823 28 100.0 32 ............................ GCTGGCTGTGAATTAGTCGGTGTCGTGGTATT 246763 28 100.0 32 ............................ TCAAAAAAATAAGGCGACGGCAGGAAACTATT 246703 28 100.0 32 ............................ CGTTTACGAATCTTGGCTACCGCGCGCACTAC 246643 28 100.0 32 ............................ GCACGAACTGCGCCCGGACTTGCACCCTAATC 246583 28 100.0 32 ............................ GGTGCCAGAGAACGGAATATACGGCACGTTGT 246523 28 100.0 32 ............................ ATTGCAACTAAAAAAATAGAAACCGATGAACC 246463 28 100.0 32 ............................ GCGCGGAATCTGTAGCTGTGCTGTCGTAGATT 246403 28 100.0 32 ............................ TTTTTCTGCCAATTCATCGAATGTCATAATAT 246343 28 100.0 32 ............................ TGGGCCATGAACTGGTACTGGTTGCTGTATTC 246283 28 100.0 33 ............................ CGACTTCAGGCTACGGTAAAAGACCGTGGTCAT 246222 28 100.0 32 ............................ TGAATACGCGTTCAAAATTGACTACCAGGGCT 246162 28 100.0 32 ............................ CAGCGATAAACGCTCTCTGTTGCGTCTGTCGT 246102 28 100.0 32 ............................ GGCGCACAGGGAAGCGGTAACAGCGTTCTTTG 246042 28 100.0 32 ............................ AGGCACATATGCAGCCACTCGTTATCATCCTG 245982 28 100.0 32 ............................ CGGTGCTGTGGTTGCGTGATGTTCTGGCAGAT 245922 28 100.0 32 ............................ AACGATAACGGCTGGGGAGGTAACTGATGCCG 245862 28 100.0 32 ............................ GTAGCAATAGCGCAACCACGCCTGCTGGCTAA 245802 28 100.0 32 ............................ ACTGTGTTAGCTGTTGCAGATGTATCAAATTG 245742 28 100.0 32 ............................ CTTTGGAATGAGCCGTTGAGGATGTCAGTTAG 245682 28 100.0 32 ............................ CATCAGTCCATCAATTGAAAACACGCCGTTAC 245622 28 100.0 32 ............................ ATTTCCAGTTCATAGCTGATGCCATCACCAAA 245562 28 100.0 32 ............................ TCCATACACACCAATGCCAACCTGAATAAAAC 245502 28 100.0 32 ............................ TCAGTAGTCTCGTCAGGCTCCTTCATTATGTC 245442 28 100.0 32 ............................ TATTGTATTAAATAGATCAAACATGACGTAAG 245382 28 100.0 33 ............................ GTCCTGGTTGCACATCAGGCGCACCTCGTTTGC 245321 28 100.0 33 ............................ ACATGGAAACGGCAAAACTGCCACAACTATGGA 245260 28 100.0 32 ............................ GGTAGTTCGCCGGGTCCAAACAGCGTGTTATA 245200 28 100.0 32 ............................ TCATAAATCATTAGTCGATTTCGTAGCGCGAA 245140 28 100.0 32 ............................ GCCGCAGACAAACCAGCCGCCGTCCTCAAAAT 245080 28 100.0 32 ............................ TCAGTAGTCTCGTCAGGCTCCTTCATTATGTC 245020 28 100.0 32 ............................ GAACTATATCGCTTTGACCATAAGGTTCTTTT 244960 28 100.0 32 ............................ GTGTCGCGAGCTGGTGGAGGTCAGATTACTGG 244900 28 100.0 32 ............................ TTCATGGCCAGAGCCGATAATCTTCAGACAAT 244840 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCACCCCCGCCAGTCTGTGCAACATGCGAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTAAAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACATACTGTTCGCGCTATGGAGATTATGATCGTGTGTGTTCTGATCAATTGTTTATCAAAATCTATGCAGAAAATATGAGTTTGAAGGAGTACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAAACTGTGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : CGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAGATAAACGATGGGCGTTACCTGACGCGAAAATTCCTTATCGGCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 262916-261866 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJI01000005.1 Escherichia sp. E1V33 1V33_5_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 262915 28 100.0 32 ............................ TGATCCTGCGCGGTGCTGATGGGCGCGTTAAT 262855 28 100.0 32 ............................ ATCATAAGCAGGTATTACGCGTATCATACAAA 262795 28 96.4 33 .............A.............. ATCTGTAATAAACGCTGCAATGGCGGTTTTACC 262734 28 100.0 32 ............................ CAGGAAGCGACGATTGAACGGATTGTCTTATT 262674 28 100.0 32 ............................ TCAACCTCTAAAGAATCCGCCACCGAGCGTTA 262614 28 100.0 32 ............................ TGATGAACATCAGGAGTGGATTGACGAGAAGT 262554 28 100.0 32 ............................ AGAGTCTGAGCATCTGCCGCTTGAGTGGCAGA 262494 28 100.0 32 ............................ TGCAAACAGCCAGGCATTCCGCGCGGATCACG 262434 28 100.0 32 ............................ TGAAGGACGTCCCCCGAGCATTTGCATAGTAC 262374 28 100.0 32 ............................ ACCGAAACACCCTGGCTTTTCTTCAATCCCAA 262314 28 100.0 32 ............................ ACGATAACAAACGTGGCATTATCTCCGGTACG 262254 28 100.0 32 ............................ TGCCCGTAACAATTCGTTAAGTCTGTGTAATT 262194 28 100.0 32 ............................ AATCTGGCCATCGAGTGCGGGCTGGCTACAGA 262134 28 100.0 32 ............................ AGAAATGGAAAAGGCCATTTCTGAAAAAATAG 262074 28 100.0 32 ............................ TCGTTCCGCCTGCTGACTGCGTTCAACAATCC 262014 28 100.0 32 ............................ TGACTTTGATATTGCCGATCTTCATGCGGTAT 261954 28 100.0 32 ............................ GGAAGAGATGGCGAAAAGTGATATTTCGGCTG 261894 28 96.4 0 ........................C... | C [261871] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGCTACGACCGGGCGATGGGCGCACGTCCGATGGCACGCGTCATTCAGGACAACCTGAAAAAACCGCTCGCTAACGAATTGCTGTTTGGTTCGCTGGTGGATGGTGGCCAGGTGACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGATTTTTAGGTAGGTTGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCATTATGGCGTTCTCAACTCCGAACCATTAGCTGCAACACACAATAACAATTGTGATAATTGCGATAAAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTGACTCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAACGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGAATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTCGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //