Array 1 23216-21254 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZYY01000024.1 Neisseria meningitidis strain Neisseria meningitidis isolate R212, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 23215 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 23149 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 23083 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 23017 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 22951 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 22885 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 22819 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 22741 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 22675 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 22609 36 100.0 30 .................................... GCCTAGTTCCGGATTGTCAATCATCCCAGC 22543 36 100.0 30 .................................... AAATCGGAATATTTCGTCAGCGTTCAAGAG 22477 36 100.0 30 .................................... TCTGTGCGTTTGGATGCGGATGAGGCGGGA 22411 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 22345 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 22279 36 100.0 30 .................................... ATATCGTACTCTTTTACGTTATTAACAAAT 22213 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 22147 36 100.0 30 .................................... GTGCGTAGTCGTATTGACGCTCGTGCTGAC 22081 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 22015 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 21949 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 21883 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 21817 36 100.0 30 .................................... ACGAAGCAAAAGGAATGATTGAACACTACT 21751 36 100.0 30 .................................... AATGTTAAACATTTTGTACGGAAAAAATAA 21685 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 21619 36 100.0 30 .................................... TGTTGTTGCAGGTCGATGGTTAGGGGTTCT 21553 36 100.0 30 .................................... TCCCTTAACCTGAAACGGAGTAATTAAAAT 21487 36 100.0 30 .................................... TGAAAACGCCGTCCTGAAAAACCGCGAACT 21421 36 100.0 30 .................................... ATAAAAAATAAAAAAAATCAAAAATAGTAA 21355 36 100.0 30 .................................... TATCTTCCATCGCCCACGTTTCAGGCACGC 21289 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 30 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTCTGGCAATCATGGCTTGTGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //