Array 1 4088-1047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOHT010000024.1 Haloarcula sp. JP-Z28 Scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4087 30 100.0 37 .............................. GTCTGACATAGGTGTTACTCTGCGGTTGTTTCAGCGG 4020 30 100.0 35 .............................. CCGTCGCGTGACGCCGTCCGGGACTTCACCAGCGA 3955 30 100.0 35 .............................. GGGCTCGGAACCGGCGCGCCCAATCAGCTCATCTC 3890 30 100.0 36 .............................. CATACAAAACCGTTGCGTTGGTTAAACAATAAAACT 3824 30 100.0 35 .............................. TGTTATCCACGAGATTAGTTTCGACTTTGGGACGT 3759 30 100.0 37 .............................. ATCGAGCGGGAGAGTCGAATGTACCGCTCGACGGCGT 3692 30 100.0 36 .............................. CACGCGACCTCGTCATCGCCGCGCTCGCGAAGGACA 3626 30 100.0 37 .............................. TCGGCATGGACCGTCGCTACGTCATTGGTCTCGCCGT 3559 30 100.0 35 .............................. GGCCCGTCGAGGTGGACCAATGAATCTCGGCCCCT 3494 30 100.0 35 .............................. GAGATTCGGAAAACTGCCAGCAACGCAAACACTGG 3429 30 100.0 36 .............................. GAGCCATATGACTGAGAGAACACGCCACAGAACCGT 3363 30 100.0 36 .............................. CCGAACCCGAGGATATCGGGTTGGAGGTGCCGCCGG 3297 30 100.0 35 .............................. CCGCGTCGCCATCACACGCTCACCGCAGTTGCCGC 3232 30 100.0 34 .............................. GAGTCTAACGACCTAAGCGCGTGGCGGAACGCTG 3168 30 100.0 34 .............................. GGGGTGCATTTGCGGCCCATGCAAGCGATACCAC 3104 30 100.0 36 .............................. TGTCCGGGCCGACAACGCCAAGGAAGTTATCATCTA 3038 30 100.0 35 .............................. CTCGATTGCCTCGACCAGGTACGGCGCGACCGCTT 2973 30 100.0 36 .............................. AGTTGGGGTGTGAAAGATGAGTAATGTTGTCCAGTG 2907 30 100.0 34 .............................. CCAAGATAGGCAGGTTAGTATGAGGAAGGGGCAA 2843 30 100.0 35 .............................. GCGGAGACATCCGTGCTCAGGCAGGCACCGATGGA 2778 30 100.0 34 .............................. GCGCCGGCTTCGTCGTCCGTGGTTGTGTGGCCGA 2714 30 100.0 36 .............................. TCGGCCAAGGAGATCAAACAGAAAATAATCGATGGA 2648 30 100.0 34 .............................. GATTGTGACGGCGGGGGTGTTCGGGTCGGCGGCC 2584 30 100.0 36 .............................. CCACATCCAGGCGTGTCGCAAGTGGGTGAGCCGTCA 2518 30 100.0 36 .............................. TCGGTCCGCTCTGCCGCCAGCCCCCGAGTCTTGCTG 2452 30 100.0 35 .............................. GAGTCGCCGGTCGAGTCGCTGACCGCCGGCGCGTA 2387 30 100.0 35 .............................. ACGCCTTCTGAGGTGAAATCTCTGACTGCGTCACG 2322 30 100.0 34 .............................. ACCATAGTACCATCATGGTGGCCCGGACTTATAG 2258 30 100.0 35 .............................. GGCGGCTGGGAATGGTCGTCGACTGCGATCAACCG 2193 30 100.0 35 .............................. ATCCGTTCGGTCTCCACAGCCGGGACAGCGGGTAG 2128 30 100.0 36 .............................. ACCGCGAGGTCAAGACTCTGGAGGAAGTCACGCACG 2062 30 100.0 35 .............................. GGGCCGATGCCAGTACTGCCCCCAGAGGTCCTCGG 1997 30 100.0 36 .............................. AGCCATGTCCATGTCTCCGGGATAGCTAGCGCGAGG 1931 30 100.0 37 .............................. ACCGTCACGTTCCTACACAATAACACGGACCTCACGG 1864 30 100.0 36 .............................. AGACTCGTCAGCACGACGAGCAGCGCGCCAAGTGTG 1798 30 100.0 36 .............................. AAGGAGCATACAACGACAAACCACGGTTAGATGTGA 1732 30 100.0 35 .............................. AACCGCCCCACACTTATGGAGTAGTTGCATCGCAG 1667 30 100.0 34 .............................. GAGTGCGACGGCTGCGGCGATGAAACCCCGACGC 1603 30 100.0 36 .............................. CTCCAGTGATTAGCGTTCCCATTGGTTTACCTCGTC 1537 30 100.0 37 .............................. TTCGGGCTCGGAATCGGCGCGGTCCTGAAGGTCCCCC 1470 30 100.0 35 .............................. AGTGGCATCATGGGCCTGTTCGTCTGGTTTGTCAT 1405 30 100.0 36 .............................. GGTCTCGTGGTCCGACCGCCACGACGTGATTCAGGA 1339 30 100.0 36 .............................. CGACCGGGCCCAAGAGCCGCAACGACGAGGAGGATA 1273 30 100.0 36 .............................. TCGCTGCGGCTGCTAGGAGCGTACCCTTCGCCGACC 1207 30 100.0 36 .............................. TGGCGGGACCAGCACAAAACGCTGAAAGAAAACTCT 1141 30 100.0 35 .............................. AGGTCCCACCCGTCGCCGGTGACTGTTACGTCCGG 1076 30 86.7 0 ...............AT.G.C......... | ========== ====== ====== ====== ============================== ===================================== ================== 47 30 99.7 35 GTTACAGACGGACCCTCGTGGGGTTGAAGC # Left flank : GCAGACCGTTGATCATCCGAGATTGAACAGGAAGGTGAGCTACCAGTACTTGCTCCGAGTCGAGGTGTACAAACTAAAAAAGCACCTGCTCACTGGTGAGGAGTATGTCCCGTTCAAGCGGTGGTGGTAACCATGGTGTACGCGATAATCGTCTACGACGTACAGGCCGATCGGACACCGAAATTTCTCAAATATCTCCGGCGGTATCTCACGCACGTACAGAACTCTGTATTCGAGGGCGAGCTCACAGAGGGGACACTCGTTGAAGTCAAAGAGACCCTCCAATCAATGCTTGAGGAAGGGGAATCCGTGATGGTTTATCGGATGGACTCGGAGAGTTATGTCGAGCGATCCGTGTACGGTGACGATCCAATGGACGACCAACAATTCCTCTAGGTATTTTCGTCGACCCCCGGGGGGTTGCGGGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAAACCAGGCTAGAAATAGGCTGTGTCCCGGAAATCGGGCATG # Right flank : AATTCGCCCGCATCACAGTTATCGAAGGTTATCGTTACCACCGACCTCGTCTACGGCGACCGGCACAAACGGCTTAGTATTTGATCTGGTGTGATACGGATTAGTGTAGATTATTTTCGGATTACACCGGCTCCGAGGTGGGTGGACACCGGTAAATTGCTACACAACTCCGTATGAGGCATCGCGATAGAAGCGCTGTTCGCTAAACCGCTCGGTGAAATCGGCGTCCCACTGCTTGGCCTCAAGCACGGCCGCCGACAGCCCGTACATGCCCTCGGTGTTGCCGTCACGTTTCTGTCGCGCCGCATCTCGCCGGGCGTCAGCAGACTCGAAGAGCAAGCGGTCGTTGTACCCGCCGCTGTCCGGGAGTGTCGTCTCCTGCAGCGTGTCGAAGCCGAGGATATCGAGTACTTCGTCGATCCATGCACCCAGCAGTTCGTCTTCGTTGTACGACGGCAGCAGGTCGCCTTCGCCTTCCCAGAGCGCTTGGAGGTCCTCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGGACCCTCGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.30,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 16691-13646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOHT010000024.1 Haloarcula sp. JP-Z28 Scaffold24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16690 30 100.0 36 .............................. ATCCCGGAGTGGAAGGTCGCCGTGATCAAGCCCGCA 16624 30 100.0 36 .............................. AGCGCTACTCCCTCGGATGGCTTGACTGAACTGCTC 16558 30 100.0 37 .............................. AAGCTTGACGTAGACAGCTACCTGCTCAAAGACAGTG 16491 30 100.0 37 .............................. GACCCGTGCTGGCGGACAAGCGACAGCGGGAGTTCGT 16424 30 100.0 34 .............................. GTTGCGGAACCCTCTGGGTCGTTGTAACCGTAGA 16360 30 100.0 37 .............................. CAGGGACGCCTCGGCCGCTTCGAGGGCTTCGAGCCCG 16293 30 100.0 36 .............................. GGCCCCCGTGGGCTTGGAGGTCTGGACGTACGTGTA 16227 30 100.0 36 .............................. GAGGCTGACGGCATCCGCGAGCGGCTCGACGAGGAC 16161 30 100.0 33 .............................. ATGTCTTCGAGGAACTGTGACTGTTCGTCAGTT 16098 30 100.0 37 .............................. GTCGGCCGCGTGACGCTGGGGGGCGTCGACGGCGACG 16031 30 100.0 36 .............................. CGTATCTGTTCGATGTGCTCCTGCTGGAACAACATC 15965 30 100.0 35 .............................. TGTGCGCGGACGTACTGGCCAGACCATTCAGCAGC 15900 30 100.0 37 .............................. TCAGAACCAGAGTACGATGACCCTCAAAACTCAGCAA 15833 30 100.0 36 .............................. AATATCGACTACGAAGCCGAGGTCGTGGGCGACTTC 15767 30 100.0 36 .............................. GACGAGCTGGCCGAGGAACTGGTCGCCGACGAGTTC 15701 30 100.0 37 .............................. AATCGCCCCGCCGGGCCTGTCCGCCGCCGAGAACATC 15634 30 100.0 36 .............................. ATCTGATGCGACAACGTCGCCGCCGACCAACAACTC 15568 30 100.0 33 .............................. TCGACAAAGGCGACGAAGGGACTTGCGCGGACG 15505 30 100.0 36 .............................. GAGGCGACGTGACGTAACTGATGCACCTGCCTGTCG 15439 30 100.0 36 .............................. CACTTTTGACACGTCGTTGACGGGATAGACCAACAA 15373 30 100.0 37 .............................. ACCGACTCGCCGCCGTGGCGTGGCATCTCGGCGACGG 15306 30 100.0 35 .............................. CGTCGTTGTCGCACTTCCCGAACTCACACTTGCTC 15241 30 100.0 37 .............................. TGGATGGCGGCGACGGCGGTCGTGCCGCTTCCCATGA 15174 30 100.0 37 .............................. GGCAGCTTGGATGTAGTCCCAGCCGCCCCCGGAGGTA 15107 30 100.0 34 .............................. CTCGTTGAGGTCGAGTTTGACCATGTCACCGCTG 15043 30 100.0 36 .............................. CCCTGACCAGTTCCGAGCCCGAGATGGACGAAAATG 14977 30 100.0 35 .............................. GGACACCTCGGTCGTACACGAGATGTTGTAGTGGT 14912 30 100.0 35 .............................. TAATGAGCTGAGTTTCGTCATTATAGACGGCAACT 14847 30 100.0 34 .............................. TGCGTTTGGTCAACCGTAATCCGTGGCCCGGCAA 14783 30 100.0 36 .............................. CTCGCTCGATGTCGTCGAAGTCAACCCCATCCTCGA 14717 30 100.0 35 .............................. AAATGTGACACCGGCAACTGTTTTGAGGGCTTCGG 14652 30 100.0 37 .............................. TTGAGTCTGGCGGATATATCAACTCAACCTCAAGCGG 14585 30 100.0 34 .............................. GCGACGAGGAGCCACCTATCGCGACCGACGGCGG 14521 30 100.0 34 .............................. AGACTTCCTCGTCTGTTATCGACGGCTCTGGCTG 14457 30 100.0 37 .............................. ATTCTGACCACTCCGTGATGCCGGTCTGATGGTCCTG 14390 30 100.0 35 .............................. AACGTACAGCAGCGTGTTCTGCGGCGGAAACTCCC 14325 30 100.0 35 .............................. TGCAATGGATCGTATTTGTGCGTGATTTGTTTCCG 14260 30 100.0 35 .............................. CAGTTTGACTTGTCGTCTCTCGCGTCTTCGCTGGT 14195 30 100.0 35 .............................. AATCTCATCGCCGTCACTGCCGTCTTTGCCAGCGA 14130 30 100.0 34 .............................. CAGTCGGGTTTGCAGTCGTCGCACTTTTGATTTG 14066 30 100.0 34 .............................. GTCGACATCGTCCTGCCGCTGGCTCATCGCTTGG 14002 30 100.0 36 .............................. AACGCGGACAACCGCTTCGTCCTTCTCCGCGAGGAA 13936 30 100.0 35 .............................. GAACCTCCTCGATCCCGCGCTTGTACTCCGAGAGT 13871 30 100.0 35 .............................. TCGCCACGGTGCATCTCGAAGCCGGTGCCCTGCTT 13806 30 100.0 35 .............................. TCGCCACGGTGCATCTCGAAGCCGGTGCCCTGCTT 13741 30 100.0 36 .............................. TCCCTCTGTGCTTGAGACGCCCAGTTCGGTCCCCGC 13675 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 47 30 100.0 36 GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Left flank : ACCATTACAACCCGAAACAAGAAGCAGTGAAACGATAGCTAAAGAAAACAGTGCAGTCTGGCCGCCGTCTCCGAGTATTCGTCTGATCACAGATTTGCATTGAAGTAGAAACTAATCAAAATGTAGGTTGCAAGCTTACCAATGCGTAGAGGAATGGTGATGTGTTCGATCTGCTGCCAAGGCGCTTCGTGAGGCAGTGGCGACGGAATCGGTTGATGTGCTCGCGCCGAGTGCGAGCCAGTACGGTGCATGGACGTTGGATGCTGTGTTGCGGGATACTGAAGATATTTCGCCAGAGGTGTTACGTGAGCTGGCGCTGGCCGGGTTGACGTTGCAGCCGACGCCGTCGCAAGCGGAGTATCAGCACGTGGCAGCGACGGCGTAGGACGGTGATGGCTATTTTCGTCGACCCCCGGGGGGTTGCGGGGGTATTGGCGGTCGACGAAAATAGTGAAGTGAGACCAGGCTAGAAATAGGCTGTGTCCCGGGAATCGGGCATG # Right flank : AGACGGACTTGTGTCGCAGGGAGAAATATCCCAACAGCAGACATATCCATACAACAGTTAATATAGTGGGAGTGTAGAAATTAAACGTATACAGAGCCCCTACAAGCCAATTCCACTTTCATTCCGCAAAGCTGGCATTTATTTACCACCCAACTGATATAGATAGTGATATGCAAGCAACTCCTCCATGGTTGGTGATGTAACCAGTGCGGATTCTCACACGACTCTCTGCGCGAACAGACGCCGCCTACGACAATACGTACCACAACAAGCTGCAGGGCCGCATCTGGCAGGCCCTCAAAGACAGCGAATACGACGCCCTCCACGACAAAAACCAGCCAAAACCATTCGTATACAGCAACCCCTTCCCGCCGCGGGACATGGACGAGGGTGACGAACGAACGCTCCTGGTTGCCTCGCCCGAGGAATCCCTGCTCGCTCATATCGCCGAGGACCTCACGCACGACCGGGAGCTAAATATCGGCGAGATGCCCTTCCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGGACCCTTGGGCGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //