Array 1 857981-852842 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086200.1 Xanthomonas oryzae strain GX2006 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 857980 31 100.0 34 ............................... GCGTTGGCCGTAGTCCTCCCGTCAATTGTGGTAA 857915 31 100.0 36 ............................... TCGTCTCCGTCTAAGTCAATCCAACTTGTTGGTGCT 857848 31 100.0 35 ............................... TTGATGAAGCCGGCCGGGTGGCCGTCCAGGTGGCC 857782 31 100.0 36 ............................... TGTAATCCTCATTAGTTGGTTGGGTGTGTTGCTGGG 857715 31 100.0 34 ............................... GCCTTAAAGGGGGAGATACATATGTCAATGCTGC 857650 31 100.0 36 ............................... CCGCCAGAGCGCCTTGCCTGCGAACTTTCCGTGGTC 857583 31 100.0 34 ............................... TTGCGATCAACACAGATCTGTGCTCTCCATTTCT 857518 31 100.0 34 ............................... GGCGCCAGCAGCATCAGAATTTATTTGAGGTTGT 857453 31 100.0 36 ............................... AAGCCGTTGCTGTGTCCTCTTCGCCACGATGGCGTA 857386 31 100.0 34 ............................... TGGACATCAAATGGTGAGGCCTTGCGTTTGTGCA 857321 31 100.0 35 ............................... ACCAACAGCACCCACGGCGTCTCCTACAACAATGC 857255 31 100.0 33 ............................... ATTGTCTAGTCTCTCTGTCTCAGTAGTTGGGTA 857191 31 100.0 33 ............................... TCTTGCTCTACACTCAGTAAGTATCTCTCATAT 857127 31 100.0 34 ............................... TGGATACTCTGCAATCTTCAGGAAATCCGTTGGT 857062 31 100.0 33 ............................... GTTGCCGTGCTGCTAAAGGTTAGCTGCACACCG 856998 31 100.0 34 ............................... ACGGTGCGGGCATTGATCCAGGGACAGGCCAATA 856933 31 100.0 33 ............................... AAGGACAGCAAGACGGCCAAGGCGGGTGCATGT 856869 31 100.0 33 ............................... AGTGTCTGCGAGCGTGCTTGCCAATAGGCTAGC 856805 31 100.0 34 ............................... TATACCAACCCCAAAAATGACACTGGTATGGGTG 856740 31 100.0 33 ............................... TCAGGGTGCAGGAGTTTATCTACAAATACCGTA 856676 31 100.0 36 ............................... CTGCCCGAACACTTTGTCGAACCGCCCACTGAGGTG 856609 31 100.0 33 ............................... GGTTTTGAGCGTGAACACGAAAGGTACTGGGGA 856545 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 856478 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 856413 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 856347 31 100.0 34 ............................... AATGCCTGCCTCTGCACAGCTGTTGACCGTGGCG 856282 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 856218 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 856152 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 856087 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 856022 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 855955 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 855887 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 855822 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 855757 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 855691 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 855626 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 855559 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 855492 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 855427 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 855362 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 855297 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 855232 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 855166 31 100.0 34 ............................... TGCTGTTAGGTCCGCAGTTACTGTATACACCTGC 855101 31 100.0 33 ............................... GTCACATTGGTTGATCCATCAGCTCCAGATCCT 855037 31 100.0 34 ............................... CCACGGACAGTGCCGAGCGCAAGGGTATCCCACT 854972 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 854907 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 854841 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 854775 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 854708 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 854643 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 854577 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 854511 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 854445 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 854380 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 854315 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 854248 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 854182 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 854117 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 854050 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 853984 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 853918 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 853852 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 853787 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 853723 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 853658 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 853593 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 853527 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 853461 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 853396 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 853331 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 853265 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 853199 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 853134 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 853069 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 853002 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 852937 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 852872 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 79 31 100.0 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //