Array 1 75-434 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTJ01000204.1 Geobacillus stearothermophilus strain FHS-PPGT130 scaffold_204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 75 30 70.0 37 T.....T...GT.....TT...C..T..T. CCGTCTCTTTCGGCTATTCTTCTAGTCCTTTGTCAAT 142 30 96.7 35 .........A.................... CTCCTTCATCTTTGAAGAATCCGCGGTATGTATAC 207 30 100.0 36 .............................. ACGGACGCCAATGCGGATTCCACTCACGACGTTTAC 273 30 100.0 36 .............................. AAAGGTATTCAGCAAAAGTTTATCCAACAACTAACG 339 30 83.3 37 T...............G.G........C.G AAAGGAATTACACAATAGTTGAATACAGTCGTCGAGG 406 29 83.3 0 ...C...GT................-...G | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 88.9 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TTTTTCTTCATGACTTGTATCTTTGTAGGTCTTCACCCATCGGGTTACGCCGTTTTTCCCGTATCTGTTGTGTAT # Right flank : AAAAGAAAAGAAGGAGGAGCTAATACAAA # Questionable array : NO Score: 8.40 # Score Detail : 1:0, 2:3, 3:3, 4:0.45, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13452-15078 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTJ01000053.1 Geobacillus stearothermophilus strain FHS-PPGT130 scaffold_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 13452 30 100.0 35 .............................. ACAACATGCCGGAGAAAACGATCGGAAATATCCTT 13517 30 100.0 35 .............................. AAAATAGATGTCCCAAAAATTGACAGGCCGAAAGG 13582 30 100.0 36 .............................. TCACGCCAATCTCCAAGTTTTCACGCAGAAACTTTT 13648 30 100.0 35 .............................. AGCTCAAATTGAATCATTTTCGTTTCACGACGAGG 13713 30 100.0 35 .............................. ACGAGTACGTCGACGTCGAAACTACAATAGAAATC 13778 30 100.0 36 .............................. TATAGAAAATGCTGGACGATGAGCTTGCCTTTCCGC 13844 30 100.0 35 .............................. TCATCGCCCATTTCAGTGACAATGGCCACGATGTC 13909 30 100.0 38 .............................. CCACATTTCGCATCGCTGTTCGTTTTGAATGCCCAGAC 13977 30 100.0 36 .............................. CCCGACGAGTAGCGGGATAATGTTAGCGTTTTTCCT 14043 30 100.0 37 .............................. CCACTTGTTGAATATTCAGCAAAAGATTGCAGACCGA 14110 30 100.0 36 .............................. TAGTACTACAATTTTATCTAGATGTCAACTACTTTT 14176 30 100.0 39 .............................. CGCATAATTGAACACTCTCCTTTGTGATTAATTTTTCGT 14245 30 100.0 40 .............................. TCCTCAACAATCTCGAAGAAGTCGTCAGAGATTGCGGCGC 14315 30 100.0 37 .............................. TCCAGCATGACAACCACTGTCCCGCTGGATTCACGAA 14382 30 100.0 35 .............................. AAGTTTCAATATCGCCCCGAGATGTATTGGCTTTA 14447 30 100.0 39 .............................. GGTAGAATCACAATTTCGGTTCTCCATATACTTCCCGAA 14516 30 100.0 36 .............................. AAGAAGAGCAGGAAAGAGTAAGAGAGGATCTGGAAG 14582 30 100.0 37 .............................. GCATTTTTGTTACCATTTGAATTTGATTCATCATGAT 14649 30 100.0 38 .............................. TCTCTTTTCAAAGTGACGATGTTCATTTATGCGTACAA 14717 30 100.0 38 .............................. CCCAATGATCGTAAGGAAAAAGCAACGCCTTTGCGTTC 14785 30 100.0 36 .............................. CCATGATGGTGATGATGCAGCGATTGCAAAATTTCC 14851 30 100.0 36 .............................. ATACGCTCGAGCAATGTTGCTTGGTCTGTTATTTCC 14917 30 100.0 36 .............................. GATGCCTCGATCGGTACGCTGATACATCTTTAGAGG 14983 30 100.0 36 .............................. CGTTCATAATTCCCGCGACAAGGTCAGCTTGCAGGC 15049 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 25 30 100.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCATGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : TAATGAAGCTAAAGGAGCATTCCCGTTAGGAGCTTTTCCGGGGACTTGATCAAAAAAAGCCCTCTTGGTATGATGCAGGGGTGTCAAACAATACCTACCATCATGCCAAGGAGGACTTCAGATGAATTGTACACAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 2303-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTJ01000042.1 Geobacillus stearothermophilus strain FHS-PPGT130 scaffold_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2302 30 100.0 36 .............................. GCGACTCCCGAGATCGCTCTGTCGCTGGAGCCTCCG 2236 30 100.0 36 .............................. GCGACTCCCGAGATCGCTCTGTCGCTGGAGCCTCCA 2170 30 100.0 37 .............................. TCGCAAACGTATCGAAACTCATCCCGGAGATCCCAGC 2103 30 100.0 35 .............................. GACGAACTGAAAAACAAGCTACAAAATGAAAAGTA 2038 30 100.0 37 .............................. TCGATAAAAATCATCCGGGATACCCGGCAAATTCAGT 1971 30 100.0 36 .............................. AACAAAAAGGAAGAGGAAATTTACAGTCAATTGAAC 1905 30 100.0 38 .............................. AGTAGTAGCCATCTAAATACGATTCGCCTAGAACGTCA 1837 30 100.0 36 .............................. TTTATTTTCTCCTTTATATCTTTTCTTCAAATTTTT 1771 30 100.0 38 .............................. AGAAAAGGCTCGCTTGCTGGAGTCGATGGGCGCTTACA 1703 30 100.0 36 .............................. CGAAAAGCGCAAGCTGAAAACGGCGAGGAGGATCCG 1637 30 100.0 36 .............................. CCGCTAATCTTATTATAATCCTTTGCGTTTCATTTG 1571 30 100.0 37 .............................. AATCAACAAACAATCTCCTTACAAAAGATCGTGAACG 1504 30 100.0 36 .............................. CCTCTACGAGATACAAAATGTCGCCTAGATTTTCGC 1438 30 100.0 38 .............................. AGTCTATTTGTCTAGCATACTTTTTCGTTTTTGTCAAT 1370 30 100.0 38 .............................. CAGAATACCAAATCACTCTGTATATAAAGAACAGCTAA 1302 30 100.0 35 .............................. CTGCCGATCATAATCATAATCGCGCCGCCGGTCAT 1237 30 100.0 36 .............................. TCGACCTACTTAGACCATTTTCCCCGCCCTTTGTAC 1171 30 100.0 36 .............................. CTCGTTGAATGTGTCCATTGCCCACATGACGTAAGA 1105 30 100.0 35 .............................. ATATTTCGAAATCCAGATTTCGCTTTTCACTACTC 1040 30 100.0 35 .............................. CAAGTTTACGGAAGAGCAAAGGAAGCGTGTTTCTG 975 30 100.0 35 .............................. AGCTGAGTGTCAGCGAACTGGGAGTTGAACACGTC 910 30 100.0 35 .............................. AGTATCTGTATCGTCTCCTGCGTCGCCACGTACGC 845 30 100.0 36 .............................. ATCAATCGCCTGAGCAAATCGCCATTTCCGCATCCA 779 30 100.0 36 .............................. TTCATAACCATACCTCCTACATTTTGTTTTTGTTGC 713 30 100.0 37 .............................. GAATGGAATCGCCCCATCTTCCATCATCGGTGGTACA 646 30 100.0 37 .............................. TATCTCGTTTCTGCCAGTCTTCTAGTCCTTCTGGTAT 579 30 100.0 35 .............................. CTCCTTCATCTTTGAAGAATCCGCGGTATGTATAC 514 30 100.0 36 .............................. ACGGACGCCAATGCGGATTCCACTCACGAAGTTTAC 448 30 100.0 36 .............................. GTAGATCGGCGTCAAGAAATTATCCAACAACTCAAT 382 30 100.0 37 .............................. AAAGGTATTCAGCAAAAGTTGGATGCAGTCGTTGAGC 315 30 100.0 36 .............................. ACAGAACAGACGAGAAAGGGCATCAAGAAGTACGGC 249 30 100.0 36 .............................. CCTTGCTTCGGCTTCTGATGATGTAGCGGAATTCAT 183 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAAACGTTCGACGGAAGAAAGAAAACGCAATTTTTTGACCCCGATGATGAGGTGTTCCCCCACCTGATTGAATTGAATTTCCGTCATAAATATGAAGCGTACTACGGCGTTCCGCCGACGGAAAGACTGTTGATCGAGCCGGTTCACGTTCATCATCGTCATCGTGTGGTGACAATGTTCAAGAATATGTATATTACAGGGTGGCTTGGCTATTACCGCCTCTGTTCTTCACCAGAACAGTTGACATTTTTATATCATGTCGGTCTAGGTGGCCGAAATTCACAAGGATTCGGCATGTTTCGCCTTAAAAGCGAATAAACGGGTCAAGAGATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAAGCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CCTTTGGCGTTTCTTCTCTACCTTCATTGTAAATTATCACTTTATTTCGGAACAAAAGAGACATTTTTTTGCACATTCCTTCAGAAAGCCCTCTCCCCTTTTCTGAAAGAATGTGCTAAATTTTTTGTGAATTATTTCGGAAGAGAAAATCCAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 13779-11014 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTJ01000042.1 Geobacillus stearothermophilus strain FHS-PPGT130 scaffold_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 13778 30 100.0 35 .............................. AAAGTTTATGATTAAAAAAGCGATAGCGTTTATCG 13713 30 100.0 38 .............................. GGCACCGGGTAGGCCGTCCGCCGGATTGGCGGGAAATC 13645 30 100.0 36 .............................. GAACGCATGGCGCTGACCAAGCTCAGCCCCATCCAA 13579 30 100.0 37 .............................. TCTACATCCGGCTTACTTGTTGGCCGTAGCTGCCCAG 13512 30 100.0 36 .............................. GGAGATACTGGTGTTCTAGGAATGTACCCAGTATCG 13446 30 100.0 35 .............................. TGCGTATAGGAGCAACATTTCCGCCTGGGTTTTTG 13381 30 100.0 39 .............................. TGGGATAAAGCGGCGGAAAAATCCATGTGGCTCATGAAA 13312 30 100.0 37 .............................. CAATTCCTCGGTTTCCCAATCATCATCCCAATCGTCA 13245 30 100.0 37 .............................. CGGATATGGAGCTAACTCTCCGGTTATGGGCTGGATT 13178 30 100.0 39 .............................. CCATCTCCACACAAAAAGCGATATTCGTCATTCGTTTAC 13109 30 100.0 37 .............................. CTTGAGCGGCGCATCCTCGCCTCTCTCGCTTGCTTTC 13042 30 100.0 37 .............................. CAAAATTGATCGCATATTCTTCGGATTCAATCGGCAC 12975 30 100.0 36 .............................. CGTACCTCCTTCTCCATCATTTCTCGGAGGAGATCA 12909 30 100.0 35 .............................. ATCGCATAATGTCTTTTCGTTTTGAGCGCCTCCTC 12844 30 100.0 35 .............................. TTTTTTAGCTTGTAAGCATCATCGAGAGCCTCATT 12779 30 100.0 35 .............................. TGATAAGTCAGTCCGGCGATTTCCCGCCAATCCGG 12714 30 100.0 35 .............................. TAGCGCCACAACAAATAACAGCGACACTGTAAAAA 12649 30 100.0 36 .............................. AATCGTGGGTGTTTGATGAAGTCCTCCCAACCATCC 12583 30 100.0 38 .............................. TTGGGGATATCGAAAAATACCGCTTCAAAGGCGTGATT 12515 30 100.0 36 .............................. ATAAAAGCCGCATAGCTAAAAAATGCTTGATACATC 12449 30 100.0 35 .............................. TGCAGCCGTTCCTTGTCCGTCATCGCCGTTTCAAA 12384 30 100.0 38 .............................. AAAGATGCTGCACTTTCTATTTTGGCAGCAGTCGCAGG 12316 30 100.0 36 .............................. GTAATCGTTGAAGTGACATAACCATTCCTCCTTCTG 12250 30 100.0 38 .............................. GCTGTTCCGGTTGGTGATGCTTGGGCGAATCCGTACAC 12182 30 100.0 37 .............................. TGGACAGTGAATTTGCGACGGGCGTTTTCGCAGTAGA 12115 30 100.0 36 .............................. ATTTCGGAAAAGCGGCCTGATGTATGCTCGAGCCAA 12049 30 100.0 35 .............................. AGATACAACAAACGTAAATCTTGATCCGTGAGTTT 11984 30 100.0 39 .............................. ATTCGCTCGCGCTTCAGAACAGGCTCAATTTCTCTCGCT 11915 30 100.0 38 .............................. CTCGCTTCGCACTTGCTTTGGTGAATCGTTCAATTTGC 11847 30 100.0 35 .............................. TCATACCCTCACCCCACTAAAACGCAAGTGATTCC 11782 30 100.0 40 .............................. GCTGGTTGTAAATCTCCATTTTCACGCGATAAATCTCTTT 11712 30 100.0 36 .............................. ACCAACGTATTTTTTCCAACAATACACGCTTTGCAA 11646 30 100.0 35 .............................. CGGCTTCAAAAGCTAAACGAGCCAGACCCATCGTA 11581 30 100.0 36 .............................. TTTCATCATCACATGCGGTTGAAATTCGATTGATAC 11515 30 100.0 37 .............................. ACCGCTATGTCGAATTAATCGAAACCATCAGCCGCGA 11448 30 100.0 36 .............................. CAGTTAGCACAAGAAACGGATACATCAGGAATGGAG 11382 30 100.0 41 .............................. GAAGCCACCCGTGGCGATGACATTGTGGTTGTCACGGTCGA 11311 30 100.0 39 .............................. AACTGGGGGAAATACAACCTCACTAAAGGCGGCAAGCCG 11242 30 100.0 37 .............................. ACAATCCGCAAACAGCGAACGCCGAGGGGTTCTACAA 11175 30 100.0 37 .............................. GATGTTAGGAACTAGCTTTTCGTTGCCCATGATTTCT 11108 30 100.0 36 .............................. CCTGTGACAATCCATTCAAAGGCTTCCATTTTCTCA 11042 29 90.0 0 ....C............A.......-.... | ========== ====== ====== ====== ============================== ========================================= ================== 42 30 99.8 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTATTTGCGGCGATCTGAAGAGGAGGAAGCAAAACGGCGACACGAGGGGAGCCAAATGGAAACGAAGGAAGCAAAGCGTGTGATGGAGCTCATCGTCTCATACGAACAGCGGGGGATGGAAAAGGGAATCCAACAAGGAATCGAACAGGGGTTAAAGCAAGGGATGAAGCAAGGACGCCAAGAAGGGATCGAGGAAGGGAAGCTCGACGTGGTGAAGAGAATGCTGGCGAAAGGATACGATGTCGACACGATCCACGAACCGACCGGACTGCCGATGGAGAAGATTGAAAGGATGAAGGGGTGAGATGGTCCTTCGCCGTCAAGCCCCACATTGTCGTCGACCTCCAATCGTGCTAAAACCCCGGGGGATCGACGACAATGGTTTTTAGCGCCTCAAGCCTACAGCCATCAAGGTTGAAATCCGTTGACAGAATTTTTGAAACGTGGTATGCTGAAAACAGCTCCAAACCGAAAAGCTTGATGGAACAAGCATTTTTGGG # Right flank : CTGCGCTAACGTCATAAAACGTTCGGCGCTTTTTTGTTTTCGCCGGACTTATGGGGAGTTGCATGTCTTGTAGTAGTATCGTAATTATGAATTTTATAAAAAACAATCTCGTTTTTTATACCATTTTTTTGTCTATATGGTATAATTAGATTAGTCCAAACGATGCGGAGGGGTGATAGATTGATCGAAGCAATCGCCCGAATCGGAAAGATGGTGCTCGAGAAGCAAGGAGAAGTGTCGGTCATTGATCAGCTGGTTGAGAATCCAGGTTATCCTTCTTGTGTGCTCATTTCATTGCGTGTGGATGGTGAGGGAAACGCTGTCTGGGAAGGATGCGAGGTTGAGGAATGCGGAAGTGATTATAAGAAATATTTGTTTCGTTCCGGATCAACGCGCGGAATCAATTATTCTCCGACAGCGAGAATTACGACGATCGAAAATACATATGATCAAAAAGTTCTCGGATGGTTTCGCAAAGTGAATCGGGTGATGGATGACCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 34577-36121 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTJ01000006.1 Geobacillus stearothermophilus strain FHS-PPGT130 scaffold_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 34577 37 100.0 35 ..................................... ACAGTCAATAGGTTTTTCATTTTTGTTCATCTTCC 34649 37 100.0 33 ..................................... TTGTGACGACAGCGCCTCTACACGCCCAACTAC 34719 37 100.0 34 ..................................... ATAAGGTCGTGATCGACATTGCTCACCGTCGTTC 34790 37 100.0 35 ..................................... TCGACTGTTGCGACTATTGCCTTGCCCGCGCTCGT 34862 37 100.0 34 ..................................... GCTTCCAGAGGAAAAAAGAAAACTTGTGCAGCTC 34933 37 100.0 35 ..................................... CCTTTCGCTGTTTTGCTTTGAATTTCGATAATGCG 35005 37 100.0 34 ..................................... GAGAATGGCCGAAAATAAAAAGGAGCGGGCTTAA 35076 37 100.0 35 ..................................... TGAACTAATGTTTTGACAACATCGATCACTGTAGT 35148 37 100.0 34 ..................................... ACACAGCACGAGCTTGAAGCGGCATATATGAAAA 35219 37 100.0 34 ..................................... CATAAGGATCTCTCCTCCAATACTCCCCGACTCC 35290 37 100.0 35 ..................................... TCGATCCGGCTGTAATATTGCGCGTCTGCGGATGT 35362 37 100.0 36 ..................................... TTTGAAACAACCTTAAACGCCATCAAAACTACATTT 35435 37 100.0 34 ..................................... TCATACACCTGCGTGCAGAACTCACCCTAATTCC 35506 37 100.0 36 ..................................... AAGGCAGGTGACAGCATGAACACCATTCAGGATCAA 35579 37 100.0 35 ..................................... TATTACCCTCGCAAGAAAAACGCCACAGAAGCCAA 35651 37 100.0 36 ..................................... AGAACACCAAGTGGCTTCCCGGCCAGGTCGTACAGC 35724 37 100.0 35 ..................................... CTATAATCGACAATACAATGCCAATGGATGCAACG 35796 37 100.0 35 ..................................... TCTGGTATTGGTCTGTTCAAATTGAGCGCTTCGTC 35868 37 100.0 37 ..................................... CGCATGCTGATCTGGAAAGGATGTGGGGTCATGGTTT 35942 37 100.0 34 ..................................... CCGCTCGCTTGCCGAGCTGTCCGAACCGTTGGCC 36013 37 100.0 35 ..................................... ACAAGGAAATTTGCGCTATTATCGACGACGTGTCC 36085 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 22 37 100.0 35 GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Left flank : TGATGTAGAAACATTAGAACCAAGCGGTCAAAAACGGTTGCGAAAAGTGGCGACCATTTGCCAAAATTTTGGTCAGCGGGTGCAAAAATCAGTGTTCGAATGCAGCGTTAGTCAAGCGCAGCTAGAAGAAATGGAGCATCAATTGTTGCGCGTCATTGACTTGGAAAAAGATAGTTTGCGGATATATACATTGTACGGCAGCCGGTCAAAGGCGGTTCGTGTCTATGGAAAAGATTATTACGTTGATTATAATGATCCCATCATTTTGTAATGACAAAGATGACAAAATGCCGATGATATGTGCGGCAAGAAGAGAATGATGCGCGAACATAAAGCGATGCTGAAAAAGAAGGGGGATCGCGATGGGCGGAAAAGCTGGTTATAAAGCCGAAGAGGGAAAATGGATCTGTGATCATTATGACTTTGCCCCAAACAGAATGCGTAAGTTCGCGTTTTTATATCTTGAAATGCGCTCAACACAAGATATCTAAACGCGGGCG # Right flank : CAAATTTGGTCAGGCCAAGCAGGAATTTGCCGCTTGCTGTCGAATTCATGTTCACGAAAATTGTTGCTTCACCTTTTCCACATCTTCTTGAAACTTCTCATGTGTTTTCGCCAGCACTTCTTCGAAGACGCCGTCGAGCCGCTGTTCGAGGACGGCGATTCCTTCCCCGGTGATTCCGCCTTTGACGCACACTTTTTCCTGCAGCGTCGGGAGCGTGTACAAGTTTTGCTTCATCAATTCCGCGAAGCCGATGATCATGTCGGTCACCAGCATCGTCGCCTGTTCTTTCGTGATGGCGGTTTTGGCCGCTGCGGCGTCGATGAAGCGTTGCAGCAAATAGCTGAAAAACGCCGGACCGCAGCTGGAGATGTCGGAAGCGACGCGGGTGATGGCCTCATCGATATACACCGGCGAGGCGATGCGCCGGAGAAGATCATCGATCGTTTGCCAGCAGTCGGCCGAACAGCGTGATCCGATTGTGATGAGTATGCTGCCGGAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTATTAAGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-15.20,-15.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 145-440 **** Predicted by CRISPRDetect 2.4 *** >NZ_RCTJ01000098.1 Geobacillus stearothermophilus strain FHS-PPGT130 scaffold_98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 145 30 100.0 37 .............................. ATAAGTGAGAACCGTGAATTGAGGAGTAGCTTTTTCC 212 30 100.0 39 .............................. CTCGATTGTTGCGACTATGCCACTTACCGCGCTCGTACG 281 30 100.0 36 .............................. CACCTGCGGAGTGGGTAGCGGCTTTGCAAGAAAACC 347 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 412 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 94.0 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CGCACCCTAGGTCTGTAAGATATCCACAAAACTGAAAAAGGATGTAAGGGATTTTGTCGAAAAATATTTTTTGGACACCCCTGAGGGGCCGAAAAGCCTTGATAAATCAACATTTCTAGAGGGAGGAATAATGATGAAAGGCATG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACTGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTCGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //