Array 1 4538-9786 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQH01000003.1 Fischerella thermalis CCMEE 5208 NODE_3_length_9772_cov_22.914246, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 4538 37 100.0 35 ..................................... CACCGGGCTTTGTTGTTAGTATTTTAGGTATCGGC 4610 37 100.0 35 ..................................... ACTATGCGGACGAGCAGTTTGGCTTCTTTTTTTGA 4682 37 100.0 40 ..................................... AACATCTCTGCGATCGCACCCGCACCAACAGCGATCGCAC 4759 37 100.0 36 ..................................... TGTGACTCTGCATCCACAGAAAGCAAGGAGTCAGTG 4832 37 100.0 34 ..................................... AAAAAATAAGCTTAGAAAGGATAAAATTGGATTC 4903 37 100.0 33 ..................................... TTCATGCTATCGACCAGAACGACCAGAACCACA 4973 37 100.0 36 ..................................... AGTTACAATGCCGCGTGCTTTCTCTGCTTCGTAATC 5046 37 100.0 36 ..................................... AGATTATTGGCTCAATCTCTAGGGGTAGATATCGGG 5119 37 100.0 33 ..................................... GGAGGATTCTAAACCCCATCCGGGCTTGCAAGC 5189 37 100.0 32 ..................................... AAATTTGATTAAAGCAAGAATGGCGAAGTATT 5258 37 100.0 32 ..................................... CTACTCTTTCTTTTTGGGGCTTGGAGAGATCT 5327 37 100.0 33 ..................................... ATTGCTTTTGGGGAATCTCTTCGATCTTTTCTT 5397 37 100.0 37 ..................................... CTTGATGATAAGAATCAGAAAGCAAAAGGAATAAAGA 5471 37 100.0 36 ..................................... GTTCCTATCATCCTGAGCGCTGTGCTCAGGGGTAGA 5544 37 100.0 34 ..................................... CGTAATAGCTTTGATTTTTTGTCTCAAGAATTCT 5615 37 100.0 34 ..................................... CTGATTTAATTTTTTTGCAGCAAAAGACAGACGA 5686 37 100.0 34 ..................................... ACTGGCTAAACATCTGACGATTTATAGGCACCTC 5757 37 100.0 36 ..................................... AAGAACAAAGAGCTGAAGAAGCATTCAGGAGTGATC 5830 37 100.0 34 ..................................... CCAAAGATATGCTACTAAAGCAGTCTTTTGGGTG 5901 37 100.0 37 ..................................... CTCAAAATCTTACGCAATATCGGTAAATTCTGAGATT 5975 37 100.0 34 ..................................... GGTTGGCGGCTTCTTTGCGAGGATACAAAATCAA 6046 37 100.0 34 ..................................... ATCCCAGTGCCACCTGTATCTGCAAAATAATCTT 6117 37 100.0 41 ..................................... TACTTTAACACATACAAGGAAGCGAAAGCCTACCTTGAGGA 6195 37 100.0 35 ..................................... GTATACCCATTTTTTGTACCTATGCTTACTCAATG 6267 37 100.0 36 ..................................... CAAGGAATCGCCGGGAATAGAAATCCAGCAACGAGA 6340 37 100.0 34 ..................................... TCTACATCTGAGATAGAAAGCAACTGTCTGAGAG 6411 37 100.0 33 ..................................... AATAGCTAAATCAAAATTTTTTTCGTAGCTCGA 6481 37 100.0 33 ..................................... GGGAGCAGCTCCCTGGCGAATCTTTTCGGCGGC 6551 37 100.0 35 ..................................... AGTAGTTTCTTTGACGACAACTTTACTGAGAGCGA 6623 37 100.0 40 ..................................... TTTCACAACAAATACCCTAAAATCACCAATTCGCGGATAC 6700 37 100.0 34 ..................................... TTCCAATTATAATAGCAGATGAGAAAGAAGAATT 6771 37 100.0 35 ..................................... GAGAACCCAGAAGGTTTGCGGCATAGAGGACTTGG 6843 37 100.0 37 ..................................... ATCCGCGAGGGTGTAATGGGAGCCGATGTCGCCTTTC 6917 37 100.0 34 ..................................... TTTCTCTGATGGTTTTATCTGTCGCCTCCCAGAG 6988 37 100.0 33 ..................................... ATTTCTCTCATCGGATCGGAACAGATGCAATCT 7058 37 100.0 35 ..................................... GAGTGAAAATTATTCCCCTGATTGATGGGTTCAAT 7130 37 100.0 40 ..................................... ACGTTGTTTTCGTACATCTCATTAATAGTTACCGTGGCAG 7207 37 100.0 34 ..................................... TTTCCCTGGGCTAGGCATGGAATCTTCCGCCGCA 7278 37 100.0 36 ..................................... GAAAGCAAGTATGAATTATTGGATTGTCTGTTCTAA 7351 37 100.0 44 ..................................... ATAAAAGCTTGAATACTCTCCTATACGGTATGTCCGCAATTTAG 7432 37 100.0 36 ..................................... CTGGATTGATATCCAGAGCTATATAGGCTTCAGCAA 7505 37 100.0 35 ..................................... TTGCGGGTTCATCATCTTTAATCATCCCCTTCAAC 7577 37 100.0 41 ..................................... CTTGAGTAATTCTGAACTGGATGATTATATTAGGCGGATGA 7655 37 100.0 36 ..................................... AGAGAAAATTCACTCTATAGGTTACGCCTCATTTAT 7728 37 100.0 33 ..................................... TCCAAAATGCCAGAGTTTCTGGGATTTGATTTT 7798 37 100.0 32 ..................................... CCGCAGCCCGTCCTCTCCATACATATAATATA 7867 37 100.0 36 ..................................... CTTTGCCGAAAATCTTTAAAATTATTAAGGATATTT 7940 37 100.0 35 ..................................... ACTGTTCCCTCGCCGACCACCGCCAGATGGAGTGG 8012 37 100.0 33 ..................................... CATCGATCGAGGATTGACCCTGGAGTGGGGCAA 8082 37 100.0 41 ..................................... TTTTATGCGATTTCTCTTGCAAATCGATATCGAAAAAGGAT 8160 37 100.0 36 ..................................... GCGGAGGCGCGATTCGCGCCCCCGCGAAGATTTTTA 8233 37 100.0 34 ..................................... TGGATTCAATAGATTTGAAGATTTTCTTTGGAGA 8304 37 100.0 34 ..................................... AGCCCATTGAAGATTTGAAAAGCCTTTTTGGAGA 8375 37 100.0 35 ..................................... TGACTTATTCCAACAGGGATAAACTCGCCCTCAAA 8447 37 100.0 35 ..................................... GGGGTGAAATATTTGAGGTGGAGTCTCACCTCGTA 8519 37 100.0 38 ..................................... GATAGTAACACTGAACTCTTAAGAGTAGAGGAAATAGA 8594 37 100.0 40 ..................................... TTCATCTGAGGACAATCCTTAGCTAATTCACTTGAAGGAA 8671 37 100.0 36 ..................................... TGCACTAATCTATCCACAAATGCAACCTGTTTATCT 8744 37 100.0 35 ..................................... CGCCACGGCAGAAGAAATAAAACAAAGGTGCCAAA 8816 37 100.0 37 ..................................... CGGATATCATCTTATACCAGTGTAGCGTACTAGTCCA 8890 37 100.0 33 ..................................... TATCTTCCTGCTCGTGGTTCCTCCTTTTCCACT 8960 37 100.0 33 ..................................... TATCAGGTAAAGAGACCCTCTACTGTAGTCTGG 9030 37 100.0 33 ..................................... CGTTCTGATGAGCGCGATACCCCACCCTTCATC 9100 37 100.0 35 ..................................... TGCCTTTGAATTCTCCCCCAATGATTTCTACTATT 9172 37 100.0 33 ..................................... CCGGATCCTGAGCCTGGGGATTGCGCGATCGCA 9242 37 100.0 33 ..................................... TACCTGACGGCACTCCTAGTGCCGACAAAATTT 9312 37 100.0 33 ..................................... GTGGATAGATTAGTGCAGACAACTGGATGATCG 9382 37 100.0 35 ..................................... CAACGACGACGCTCTCGCCGCTGTTGATTTTTGCG 9454 37 100.0 37 ..................................... TTTTGCGGTGTGTCTCTCTCCATCTAGACTGTTTTTG 9528 37 100.0 37 ..................................... ATCATAACAGAGCAACCATCCTATGGAATTCCTTCTG 9602 37 100.0 34 ..................................... TTATTCCTTCTAAATCTGCTTCCTTCAAGGTATT 9673 37 97.3 40 ....................A................ GTCCAAAAGACCGCCATTTTCAAAGATTAATTGCCCATAC 9750 35 83.8 0 .........................G.C.GC....-- | TT [9779] Deletion [9785] ========== ====== ====== ====== ===================================== ============================================ ================== 73 37 99.7 35 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : GTCCAAAAATTAACAAGGCGACGATCGCGATTACCCCTACTTCTGTCCATCCCAGTCCAAACATAAGTGTCTCCCGTGAAAAACTCTACTTAAAATATAGTAGGGTGGGGATGTATGGATGATGTTGTGATTTTATTTGGGGTGTGTGGTTGAGTATCTTTTTTGAACCACAAAGCCACAAAGACACAAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTAGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCCTACCAGTTCTGCTTTTGAATGCTTCTAAGTCCAAAAGGGGTTTGCACCAATTGTGAAATGCTTGCCAGACAAGGTTTTGAGCCTATTTTTTCTTCTCCGCCCTTGACATTCCGATGGCTGAAACGCTATATTTACTCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : TTTGGTCATGAATTATGTGTGCATACATTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 21261-15876 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQH01000008.1 Fischerella thermalis CCMEE 5208 NODE_12_length_26975_cov_25.812382, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 21260 37 100.0 39 ..................................... AAAGAAGCAATGGAAGAATGCGATGGCTCCCAATTTTGA 21184 37 100.0 33 ..................................... ATCCTGAAGATTCGCGAAGGCAAGGGAGAGCCA 21114 37 100.0 34 ..................................... CCGGGTGGGGAGGATAATCTCCCACACCCCATCT 21043 37 100.0 35 ..................................... TACCAACGGAGTTGCTGTACTAGATTCTGATTTGG 20971 37 100.0 35 ..................................... TCGAATCCCTTCAAGAATGAGAGAAATAACCATAC 20899 37 100.0 33 ..................................... CGTGGAGTACCCTGATGGGCAAGTGTATCCAGG 20829 37 100.0 35 ..................................... AATACTAATCAAATTTCTTACTCTTGGGGAAAGGG 20757 37 100.0 37 ..................................... GTCTGTCTATATACCAATCCCAGAAAAATCCATTTGT 20683 37 100.0 36 ..................................... TATACGCCTGATGGTGAGGCTATAAAGTTGCAAGAA 20610 37 100.0 36 ..................................... GGAGGAACGCTGGACTCGGATTTGATCGCAGATTTC 20537 37 100.0 36 ..................................... AGAGAATATCCCGGATCTTTTTTGCTCCTCGCTAAA 20464 37 100.0 32 ..................................... TGGTTATTTCTCTCATAAAATAGGAAAATCCC 20395 37 100.0 39 ..................................... TGCACCAAAGAAAAAGAGAGAAATAAATGGCTTCTGAGC 20319 37 100.0 34 ..................................... GCTCTAGCAGATTATTCCCTTGAAGCCATTCAGC 20248 37 100.0 36 ..................................... GATGTCCCCACTCCATTGCTGAGATTGACTTTTGAT 20175 37 100.0 35 ..................................... CGAATTTGAATTAATCGAAGCCGCTTGCAACGGCT 20103 37 100.0 34 ..................................... TTTACGGCTTTGACCGCATGACCGGAGGACTGGA 20032 37 100.0 37 ..................................... CAGTGCGCGAATAGATGCACTAATACCTTCAAACAGC 19958 37 100.0 35 ..................................... TTTGATGACTTGGAGAGACCGAACGTATTGCACAT 19886 37 100.0 35 ..................................... AAACCAGCCATAGCGCACACCCTCGCTTCAGTGAG 19814 37 100.0 34 ..................................... TCGCCAATCCTTTGATTTTTAAGTCGCCCAGCTT 19743 37 100.0 34 ..................................... GCAGATAAATCAGTGCATCTCAACCAACTTCCGA 19672 37 100.0 35 ..................................... TAGCAGCGATCGCTGGCAAAATATTAGCTAAAGTG 19600 37 100.0 35 ..................................... CGGCAACCTCTCTACGTAGGCTGCCGCCAGCTGAT 19528 37 100.0 33 ..................................... ACCTACCGGGGTTCGAGAGTTGGCAGAAGAAAG 19458 37 100.0 35 ..................................... ATAAGTATGATCAATCTTGCTCTTTTGGATCTGGT 19386 37 100.0 36 ..................................... TTTTCGGAGATCCTGTGCCCGTGGCACCGCTACGGG 19313 37 100.0 37 ..................................... CAATACGTCTTTGTGTGCGTTGCATCCGTGCCTCCAT 19239 37 100.0 35 ..................................... TAGATTCAATAGATTTAAAAATTTTTTTTGGAGAA 19167 37 100.0 34 ..................................... GGGAATCTTGAATTACTCCTTTGCTCCGCAACCA 19096 37 100.0 34 ..................................... GGACCATCAATTCTGCCACCTGCAAACATGGTGT 19025 37 100.0 40 ..................................... GCTTATGATACGGAACAAGAAAGGATTCGACGCAAATTAA 18948 37 100.0 41 ..................................... AGATCACTTAGCAAATTACAAGCAGTTACATCAACCACAAA 18870 37 100.0 34 ..................................... TTCGAGGTGGAGAGATAATAATCCTAGCCGGAGG 18799 37 100.0 37 ..................................... AAATGGAGGAAAGCATATCTGCATCGAGGTGAAGGGG 18725 37 100.0 34 ..................................... TTCAAAACCTGCCCAGGCTGACCACTAAAGTCTT 18654 37 100.0 34 ..................................... ATCATTCGCTTTAAAGCAACTAGGATCGGTTGAA 18583 37 100.0 38 ..................................... GGCGCGATCGCGATATTTCTGGGTAAACAAGATTTAAA 18508 37 100.0 37 ..................................... TATATATTATCCACAAATGCCATCTGCAACAAACACA 18434 37 100.0 35 ..................................... ATGCGCGATCACCTCCTTTGCTCGCGATCGCATTT 18362 37 100.0 35 ..................................... TCTTATTCCGCTCCTAACCTTACTGTTAATTTTAG 18290 37 100.0 34 ..................................... GTACTTGCTGCCGCAATTCTCCAAAAGATTGATT 18219 37 100.0 36 ..................................... AGCCTTTAGTGCACACGCGCGCACAGGCATTTATTG 18146 37 100.0 34 ..................................... GCCAAACAAAGAGATGGAGAGACAGGAACAACAA 18075 37 100.0 35 ..................................... CCGGTTAATTTACCGCAATGTCCCGGTTAATAAAC 18003 37 100.0 34 ..................................... TAGCCACTAGGCTTTTTTGATGGGTACATTTTAG 17932 37 100.0 34 ..................................... CCAATCCATTAAGCGATCGCACGAAGCAGCACAA 17861 37 100.0 32 ..................................... GCCCCGCATTTTTCTTGGCGGAGGATTGCCCA 17792 37 100.0 42 ..................................... CAGTATGGATTGGGACGTGGAACAGGTGTCGGCACTCGCCCA 17713 37 100.0 36 ..................................... CGCGATCGCCACCGGAGAGTCTGACTTCCTAGGTGA 17640 37 100.0 34 ..................................... CGTAATGCGATCGCACAGATCGCTTTGCTGGTTC 17569 37 100.0 35 ..................................... TGTGTGCGTTCCCTCGGCGGGGGGAGGCGGGGGGC 17497 37 100.0 35 ..................................... AGTTTCTTTTTTGAACCACTCGTACAAGAATTTGA 17425 37 100.0 37 ..................................... AAAAAGGCATCAAAATCAATAGCAGGCATAGACCCTG 17351 37 100.0 35 ..................................... AGCCTTCAGGCGATCGCTCTTGGTGGCTTCGTAGG 17279 37 100.0 40 ..................................... CTGGGGGCTGAGGTTAAGGAGAAGGTCGGAGCAGTGCTAG 17202 37 100.0 33 ..................................... CAGGACACTCCAAAGGTGTCGGGATCCTTGATC 17132 37 100.0 35 ..................................... GCCCAATAGCAGCGCGATCGCCCGAGATAGAACAG 17060 37 100.0 34 ..................................... TGCGGTAAAAGAGTCTAAAGAGAAAGAGCCTGAA 16989 37 100.0 34 ..................................... TTTGATCAATACCTCAGAAACGCGCATTCAAGTA 16918 37 100.0 34 ..................................... GATCAATTTTTCGAACTTGTGCAGAGATTCCAAC 16847 37 100.0 34 ..................................... TGCTTCTACCCCCCACTTGCTCTAGCAGATTATT 16776 37 100.0 33 ..................................... ATGATGACAACCTCCCTTCCATCTAAATAAACC 16706 37 100.0 36 ..................................... CGGTAGAACCAGTTGTTAGACCAGGTTGGTCCGAAA 16633 37 100.0 37 ..................................... ATTCACCCGGAATGTGGTATCTGCCACCCCATATATA 16559 37 100.0 34 ..................................... GTCCGAGGCTGTGGATAAGTTCTTCCAGTCGGAC 16488 37 100.0 33 ..................................... CATAGTCTTCGATGTCGAAAGAGAGTCCAACCA 16418 37 100.0 33 ..................................... CGAGAATTCGGCTGAATTCTCGCTGATTGGTGA 16348 37 100.0 34 ..................................... TCTGTCCTGACTCGGCAATCACAATCGTAAATGG 16277 37 100.0 36 ..................................... GGTGCATGGGAAAGAGCACAAGATGACATCGTATTT 16204 37 100.0 38 ..................................... TGGTGACATCCCATTTAATCCGCCAAGTTTATCCTGAG 16129 37 100.0 33 ..................................... ATGGGGGCGATCGCATGGCTTTTATCAGTCGCC 16059 37 100.0 33 ..................................... CTAGAAATTCAGCAGCATGTTGAGGTCGCCAAA 15989 37 100.0 40 ..................................... GCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 15912 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ========================================== ================== 75 37 100.0 35 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Left flank : GGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTGGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGCG # Right flank : TGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 16265-16520 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQH01000036.1 Fischerella thermalis CCMEE 5208 NODE_40_length_28109_cov_28.862783, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 16265 36 100.0 36 .................................... ACAGGCGGAGCCAATCAAAAGCATGGCCCACGCAGA 16337 36 100.0 37 .................................... GTGGTTTCGTTTGGTGTGTTGCCGTCGTTGATGGTTT 16410 36 100.0 39 .................................... AATATATATATATAGAGCTACCGCTGGACACAACATATT 16485 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 99.3 38 GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Left flank : TTACACTATGATATGGTGCGTGCAGGTTTACTCATTTACGGACTTTACCCAGCCACACATTTGCGATCGCAAATTAACCTGAAACCTGTTTTGCAAGTCAGGGCCAGAGTCACCCAAGTCAAAACCATTGCTGCTGGGACTGGTGTGAGTTACAGTCATCAATTTATTGCCAAGCAAGAAATGCGAATTGCTGTTGTTGGCATTGGTTATGCCGATGGTGTTCCACGCAATCTTTCCAACAAAATGCAGGTATTAATTCGTGGTCAAAGAGTACAACAGATCGGCGCAATTACAATGGATCAACTGATGGTAGATATCAGTGCCTTACCAGATATACAAGAAGGTGAGGTAGTCACCCTACTAGGTCAAGATGGCAAACAACAAATCTCCGCTGATGATTGGGCAAATCAACTAAACACAATTTCTTGGGAAATTCTCTGCGGATTCAAGCATCGATTACCTCGTGTCGGTGTAATTTAGGTTCCCATTGTTTCCATTCA # Right flank : TAGTCCTATTTTAAACCGTTACCCAGTAAGATTTCCAGAGCCGATTTCCGAAGTTCAGATAATTTACAGACAAAAACATCTCAATTCCTCCAAACAAAAAGCCTAAAACCCTTATGTACTAAACAACCGAAGTTCACAACACAAAAATAGGCATTTGCAGAATTTGGGCTGAACTTCGGTAGTTGCTCTTAATTCGTAAAAATTATTGCTCTAGACAACTTTTATGCTATGATAAGGAACTGATGCGGATGTGGCGGAATTGGCAGACGCGCTAGATTTAGGTTCTAGTGCCGCGAGGCGTGAAGGTTCAAGTCCTTTCATCCGCATTTTAAATTAACTAATGACAGTACAAAATTATTTTGTAGGCTTCTTTATTGCAAAGCCGCAAAGCTTACAGGGAATGAGTAGAATTCCAGAGCAGGGTGATGCTAATCCTAGCTGTTCTTTAGTAACTGTTCGCCAGAACTATTGTTTAGATATAGCCGAGAATTAGATATTAC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAGTTTCCCCAGCGAGTGGGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 17104-23381 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQH01000291.1 Fischerella thermalis CCMEE 5208 NODE_400_length_25466_cov_24.839590, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 17104 37 100.0 36 ..................................... AAACGCGGCAGCAAGTGGTACATACAACTGACCGGA 17177 37 100.0 36 ..................................... TTTGGGAGCTTTAAAAACGTTGGTTACCAACTTTAG 17250 37 100.0 42 ..................................... CTTGGGGAAACCCAAAAGCAATGCCATCATCTCTGCGCTCAA 17329 37 100.0 34 ..................................... CATCCTGCAATAAGGAAATTGGGACTAAAAGGCT 17400 37 100.0 36 ..................................... GATTAAAATACATGTCTAGCATGTTAGATTTTTCTT 17473 37 100.0 38 ..................................... TACTTGATAGTGCCGCCGACCCTCACGCCGACGATGAC 17548 37 100.0 35 ..................................... AGGCGATCGCGTGCTGAAAGTTGATCAGATCGCAA 17620 37 100.0 34 ..................................... GCTCTGGGCTGATTATTCTGGATAGTTCTACTGG 17691 37 100.0 36 ..................................... ATTTTTTGGTGGATACTCTTCCGTGTATGTGCCTTC 17764 37 100.0 37 ..................................... GAAAACCCTCTTTTTTGATAGTCGGAAACTAATTTCA 17838 37 100.0 44 ..................................... ATAAATAAAGGGAAATTTGGCAGTGGCGGTCTAACAGATGCCGA 17919 37 100.0 36 ..................................... CGTCTGTTGGGGCGCCACGCCGTTTTTTGTGAACAA 17992 37 100.0 34 ..................................... ACCCTGATTTTTGGGGGCATTACGCCCCAATGGG 18063 37 100.0 35 ..................................... CATTGCCGCGATTACCCTTCCCACCTAAATACGGA 18135 37 100.0 34 ..................................... AAAAAGGAATTCAAATACCTTTTTATTGATATCT 18206 37 100.0 33 ..................................... GGAATGGCGCGCCAAGGCTGCGAATTTCCATGG 18276 37 100.0 35 ..................................... CTTAAATCTGATGGGAATAGGGCATTTGTGGATAA 18348 37 100.0 36 ..................................... AAAATGCTTTGTGGCTCACCCTCTTTCATCCATGCG 18421 37 100.0 34 ..................................... CTTGCTCTCCCAGCAATCCTATTTTTGATTTAGT 18492 37 100.0 32 ..................................... GCAAGCAGCAGCTCAAAAGCCAAACAAAAAGG 18561 37 100.0 34 ..................................... GGTTTCTGATGCAATCCGCCAAGGACGATCAATT 18632 37 100.0 36 ..................................... ATTTGTGAACATCTATCAATCGCTAACTTATGCTCA 18705 37 100.0 36 ..................................... TTTTCTGGACAATATCATGCCTGGAATGTATCGCGA 18778 37 100.0 35 ..................................... GCTCAGTATGATATTATTCGCCAATCTTCTTCTTT 18850 37 100.0 35 ..................................... GCAACTAGGGTGTCACCCAAAGTTGAATCATCTGT 18922 37 100.0 37 ..................................... TCTAGGCACATTCACAACAACAGGCACTCTGTTGATT 18996 37 100.0 35 ..................................... TATGAATTCGGGTAGATAGGATTGATATCTGTCGT 19068 37 100.0 35 ..................................... GCGTTGGTTTTGGTTGCGGCGGCGATCGATCTGTA 19140 37 100.0 34 ..................................... TTAGTAGCTGCTTGCAATTGCTGCTCGGTAACCG 19211 37 100.0 32 ..................................... GCCTGCGCTTCTAGTTGGAAATGGCGCTTAAT 19280 37 100.0 35 ..................................... CACCGAAGGAGTAAGAATCCTGAAAAAGAGAAGCA 19352 37 100.0 34 ..................................... GACTTTCCTAAACCAGGTTCTGTACCTACGGTTA 19423 37 100.0 34 ..................................... CATTAATGCTTTCATTTGCTCATTGCAGATATTG 19494 37 100.0 35 ..................................... AACCAATACAGGATACCCCCCAGAACTGCTCCAGG 19566 37 100.0 38 ..................................... TCCCTGTGGCATCACACAAGAACAAATGTACTTGTCCC 19641 37 100.0 34 ..................................... GCGATCGCACCTACTGATTATCAAGTTGATTTGG 19712 37 100.0 41 ..................................... AGTGACGCTTAACGTAAGTCACTTCCCCGCTCTGGAAGTGA 19790 37 100.0 34 ..................................... GTGCTGGATTCTTACAGTATTACCATAGCCGCTT 19861 37 100.0 35 ..................................... TAGTTTTTGGGACTGAACTATTAGAAAACAATTTT 19933 37 100.0 36 ..................................... TGGCAACCTCTCTACGTAGGCTGCCGCCAACTGATT 20006 37 100.0 37 ..................................... TATCCCTGCGGATTTTGAACACGCACCACTCCTAGCT 20080 37 100.0 34 ..................................... ATGTAGAGGAACTGGTAGAAGCTGCGGCACATAC 20151 37 100.0 33 ..................................... CGAGACCTTAGGACGCATAGGGGCTTCATTTGG 20221 37 100.0 35 ..................................... ATTTATGTGGATGAAGCTTACTTGATATCCTAGCT 20293 37 100.0 34 ..................................... GATCCAGAGTCCATACCTATGTAGTGGCTAGGAT 20364 37 100.0 36 ..................................... AGACAACAACTACGCGATTGATTACTTTGTTGTTAA 20437 37 100.0 37 ..................................... TTTAAAGCTCCCAAAGACAGAGCAGGCGTGATAATCG 20511 37 100.0 37 ..................................... TTATCGTGCAATGTTACTATGCGGGCGAGCAGTTTGG 20585 37 100.0 40 ..................................... ACAAATAATCAAATAGGCATCACTAGGAGTAGCCCCATAT 20662 37 100.0 34 ..................................... AAAAGTCTTTTGGCTGATAAGATGTCTACTATTA 20733 37 100.0 35 ..................................... TTGAAACAAAGGTGTGCGGGGCTGCTTAGAATCCG 20805 37 100.0 39 ..................................... TGGACAAACATTCCCGATGCACGTACCAAACCCCACTGG 20881 37 100.0 36 ..................................... TTTAAGCCAGCTAGAAAGATCAAATCCAGAAGAAAT 20954 37 100.0 39 ..................................... CATCTTGAACGCCACCCAGATAACTGGTGGGACATGGGT 21030 37 100.0 36 ..................................... ATAAGCTAATGAAGTGACTTTACCTCAGATAGTCAG 21103 37 100.0 35 ..................................... GCGCTGACCAGCTCCAGGCACTTTTCGGGCATCAG 21175 37 100.0 35 ..................................... CAAAGGTAGCCGGAAGCGTAAAAGGCAGTCTCAGT 21247 37 100.0 35 ..................................... CACCAGATGCCAGGTCGACCTGACCACGACCACCT 21319 37 100.0 39 ..................................... AACTTCCCCGGCAAGATATACAGCGAGTTGGATGCGGGC 21395 37 100.0 36 ..................................... GGACACCCTGAAGCCTAACGACTCCATGGCTTTGAG 21468 37 100.0 39 ..................................... GATGGCGGCAGCTAGCGGGGACTTCCTATCAGCCCGAAT 21544 37 100.0 34 ..................................... AATCATAACCTGGAGATAGGTTAAGTTCTGCGAG 21615 37 100.0 35 ..................................... TTGCCCCAGAGAGACCTCTACATCTATGATCTCTC 21687 37 100.0 35 ..................................... TGCCATGGTTTGACACCCTAGTTATGTGGTAACCT 21759 37 100.0 35 ..................................... ATTGACCCATATATAGGTCTCGTCAGGTCTGGGGG 21831 37 100.0 35 ..................................... GACTAACTTTTACTAAACACCTTGGAGGTAAAGTA 21903 37 100.0 38 ..................................... TTTACCCCTCCCACAGACTGAGAAAGAGTTCGTGCAAT 21978 37 100.0 32 ..................................... TGGTGGACGGTTAAAAAATTCACATTCAACAG 22047 37 100.0 35 ..................................... CTAAAAGAAATGGAAGAAAAGAAAGAGCGCATAGG 22119 37 100.0 34 ..................................... CTCCTGCCGGACACAAGTGCGGATCTCATCGTGC 22190 37 100.0 33 ..................................... ATTTGTGCTGCCCTAAGCTGCCGGTGTATCACT 22260 37 100.0 34 ..................................... CTTGCTCTGAGTTTGTCGGAGTAGTGGGCAACCC 22331 37 100.0 36 ..................................... GCAGGCAAATCATTTTTAATTGCCCTAACTATAGGC 22404 37 100.0 36 ..................................... ACTACTTTCTTGCCATTACTCGTGGTGGCATCGATA 22477 37 100.0 35 ..................................... ACTACAAATATCGGGGTGAGTCTTTTCCTGTCGAA 22549 37 100.0 34 ..................................... CCGAAGCCTCAAACCAACGGTGTACCGTTGAACG 22620 37 100.0 39 ..................................... CGGCAAGATAACCTTTGATGATGGTCGGAGTGACGCCTC 22696 37 100.0 38 ..................................... AGCTCAGGGTGCAAATAATATCTAGACTTAGCTTTTTT 22771 37 100.0 36 ..................................... CGACGACTGGTATCGGCGCTGGACAAGCATCTAAAT 22844 37 100.0 36 ..................................... GGCAGCACCGCTGGGATGGGTAAGTCCACCCTAATG 22917 37 100.0 32 ..................................... CCGGCTTCACCCAAGTGTTATTGACCCATATG 22986 37 100.0 35 ..................................... AACTCTTCATTTGACCTAATCACTTGGTTGGCATG 23058 37 100.0 36 ..................................... ATCAAAATCGTCCCGGACAGTTTTCAGCTTCCCTAC 23131 37 100.0 33 ..................................... AATCGTGGACATCTTAAGCGCCAAGAGTGCTTT 23201 37 100.0 37 ..................................... AATTTTTCCGGAAGTGTATTTGTCTTTGCCGACGGCG 23275 37 100.0 33 ..................................... GCATTTTTTCTTTGCCAGTATCCGACCACTTCT 23345 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 87 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCA # Right flank : CAAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTGCATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGTCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 13994-9109 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMQH01000142.1 Fischerella thermalis CCMEE 5208 NODE_174_length_15637_cov_25.534374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 13993 37 100.0 35 ..................................... CTCCCCTATAAACGGTTTGGGCTAAACCGAGATCA 13921 37 100.0 32 ..................................... TACAAATACACCAGCAAGAAATGGCGTAAGGG 13852 37 100.0 33 ..................................... CGCGAGTGATTGGCCCGCCGAAAGTATAAGAAT 13782 37 100.0 36 ..................................... CGGATTAATACGAAGATCAAAATCCGGCAATCTCTC 13709 37 100.0 40 ..................................... CTCCCTCTCCACTGAGAATTGGTAAATACACAGATGAATT 13632 37 100.0 35 ..................................... TGGTATAAACAGTGCCAAAGCCACTGTTGAAGCTT 13560 37 100.0 35 ..................................... ATCCATTTGCAGCCAAAAGATAATATCTCTCGCTC 13488 37 100.0 35 ..................................... CTCATAATCCGAGCTGTGGATTCGTGCCCGATGGC 13416 37 100.0 32 ..................................... TTTCGATTTGGGCAATCCTCCGCCAAGAAAAA 13347 37 100.0 37 ..................................... TAAGCTTAATCTATCCAGCGAGCAACAGCAGATAATC 13273 37 100.0 34 ..................................... TCTTGCTCATCTCCAGGGAGAAGAAATATACAGG 13202 37 100.0 33 ..................................... TCTTCGATATCTTGGGATGCTTTGTTGGCGCGT 13132 37 100.0 35 ..................................... GCTTCTACCTCTAAAAAAGCAAGATTGCAGTAGAG 13060 37 100.0 36 ..................................... CTTGGAAGCCTATGAAGGCTTGATGAAAATGGGGTT 12987 37 100.0 35 ..................................... GAAAAGTATGGGGGGTATAGCCCTAGGATTATTGG 12915 37 100.0 34 ..................................... AGCTCTAATATCTCCAGGGTATGTGCTTAGGAAT 12844 37 100.0 35 ..................................... ACAAAGAGAAAATTATTTGAGGAAGTATTCCTGCA 12772 37 100.0 37 ..................................... ACACAAAATCGCTTTGGTTCAAGCAAAAAAATTCTTT 12698 37 100.0 39 ..................................... GGGTACGCTCTTAGGAATATCGCTATTAATCGATACTGT 12622 37 100.0 38 ..................................... GCCAGTATCTTCTTCTTATTTCTCAGGATCCTCGCCAG 12547 37 100.0 36 ..................................... CTCTCTATCGGACAGACAGAATCTTCTAATGTCGCG 12474 37 100.0 41 ..................................... ATATATCGATCAGCATCGGCTGCCATACCCGGCGATGTACG 12396 37 100.0 35 ..................................... TTGCTCTTTTGGCTCCGGCATTCTCCTTGCCTGGA 12324 37 100.0 36 ..................................... ACAAAAAAGCCTTAAATTGTTTCTAGCATCCCGACA 12251 37 100.0 37 ..................................... TATCTATATCAAACAAAAAGCATTTAATTTAACTAAA 12177 37 100.0 35 ..................................... CGGCGAAAGACCAGACAACAAAACCGTTGGGAGCA 12105 37 100.0 37 ..................................... TAAGGGATTTTCCCTCGTACAGCCAGTGATTATATAG 12031 37 100.0 38 ..................................... TAACACCAAACTATCGGGATTTCTCAAACGAGTAGTGG 11956 37 100.0 36 ..................................... GGCTTGCTGACCACGTGCCGGACATTGCACCATGTT 11883 37 100.0 34 ..................................... GGGCTAATCCCGCCTGAGTGAGAAGGCGGAGATC 11812 37 100.0 38 ..................................... CATCTACATGGGTGGAAGCTATGTGATGTTTCCACCAC 11737 37 100.0 35 ..................................... GGGGCAGAAGCATATACTGCCTTGGGCGCAAGAAG 11665 37 100.0 38 ..................................... GGCAAGACAATGGCAGGAAGACCTGGGGGCAATCCAGA 11590 37 100.0 40 ..................................... GACTATTTCAATCTTTTGGTATGCATTAGCGGTATTTACG 11513 37 100.0 33 ..................................... GGCAAGGGAGCAGTGCCGACCGAAATCGGCTTT 11443 37 100.0 33 ..................................... TAATGACATTCCTCCCAACTCTTTCCTAACTTA 11373 37 100.0 37 ..................................... AGCAACTCCCCCCTAATATACCCGAACGACGTCTGAA 11299 37 100.0 34 ..................................... AGAGTCAATTTCATTTCAGCTAAAAATACTACTA 11228 37 100.0 34 ..................................... ACACACAGCACAACAATCGCCAAAGAATTAGTTA 11157 37 100.0 34 ..................................... TAGCATCGGTGGCTCACTTTATGAGGTATTTAAC 11086 37 100.0 35 ..................................... AATTGCTGAAAAAATTGCAAGAGGCGATCACCGAA 11014 37 100.0 39 ..................................... CTCCTCATCTTAAATCCAAGATCTTTTATCAGATTTTCA 10938 37 100.0 36 ..................................... TCAAACACTGAATCTTCTCCACCGCCACCAATTGAT 10865 37 100.0 33 ..................................... GCAGGTGCTTGCTCTGAGCCTCTCGGAGTAATG 10795 37 100.0 34 ..................................... ATTTTTGTGATCGTACCACCATGAGCATTTGGGC 10724 37 100.0 32 ..................................... ATCCAAGCATCTGGGGTAGACTTTAGGGACTT 10655 37 100.0 30 ..................................... GAAGATTAATCCACAGTCATGAAACCAGGA 10588 37 100.0 34 ..................................... ATAAACGATGGGGGGCTTTCCAAGCTCTCCTACG 10517 37 100.0 36 ..................................... AGAGTCTTGGTAGCCGCTCCTCCACTCATTCCTACG 10444 37 100.0 33 ..................................... GACTAAGTTCCCCTAAACGCTTATAGGGAAAGA 10374 37 100.0 35 ..................................... AGCCTCTTTAATTAGTGGATCTATAAATCTGTTCA 10302 37 100.0 36 ..................................... TACACCATGGAAGACCTCTTCCAGATGGAGAGCGAG 10229 37 100.0 35 ..................................... CAAGCGCGATCGCGCGCTAGGATTAGCATTGAAGG 10157 37 100.0 34 ..................................... ATGCGCGATCACCTCCTTTGCTCGCGATCGCATT 10086 37 100.0 35 ..................................... TCTGGCACTGGGATACCAACAGGCACAACCGTAAG 10014 37 100.0 35 ..................................... GCAGATGATAATGGTGCCCAGGCTTTACCTTTGGA 9942 37 100.0 36 ..................................... TCACCAAGTACTGTAAAAGGACTATAGATAGATTCG 9869 37 100.0 34 ..................................... GCTAACTTCATAAGTGAAAGTAGTAGAAGTTGCA 9798 37 100.0 34 ..................................... TACAAACAAACGAAAAGCACATGCATGATTTTTT 9727 37 100.0 34 ..................................... CGCCAAACGCATACGTCAATGCAAATGACTCCAC 9656 37 100.0 35 ..................................... CACCTACGGGCTGCAGTGGCTTGAGGGGGTTGTGG 9584 37 100.0 36 ..................................... GTCGCCCGCGATCGCCAAACGATTAAGCATCGTTCA 9511 37 100.0 34 ..................................... TCTGAGCTAGCCGCAGAAGCCAAGATCCGGCAAA 9440 37 100.0 38 ..................................... GGCGATCGCTTGCAATTCCTCGACATTCAGCGATCGCC 9365 37 100.0 34 ..................................... ACCGAAGTGACATAATCGATTTGTATGTGCAATA 9294 37 100.0 35 ..................................... CAAACAAAAAAATTTTTTCAATCCCAACCTAACTT 9222 37 100.0 40 ..................................... CGACCGGATCCCAAATGAAATTGCAGATTTGCTTCGAATC 9145 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 68 37 100.0 35 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCTAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCA # Right flank : CCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGACTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //