Array 1 127484-125625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEX010000009.1 Escherichia coli strain 17M scaffold_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127483 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 127422 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 127361 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 127300 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 127239 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 127178 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 127117 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 127056 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 126995 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 126934 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTTGTCTCGTT 126873 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 126812 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 126751 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 126690 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 126629 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 126568 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 126507 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 126446 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 126385 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 126324 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 126263 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 126202 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 126141 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 126080 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 126019 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 125958 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 125897 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 125836 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 125775 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 125714 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 125653 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154432-153183 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZEX010000009.1 Escherichia coli strain 17M scaffold_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154431 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 154370 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 154309 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 154248 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 154187 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 154126 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 154065 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 154004 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 153943 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 153882 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 153821 29 100.0 32 ............................. TCTTCAACGGTTTTGATTTCAAGTTTTTTGAG 153760 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 153699 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 153638 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 153577 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 153516 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 153455 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 153394 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 153333 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 153272 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 153211 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //