Array 1 1429866-1431358 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVN02000001.1 Pelosinus fermentans DSM 17108 strain R7 ctg1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1429866 33 100.0 34 ................................. GTGTGTCTTGGGTAAATCGAAATAAACTGTATTC 1429933 33 100.0 33 ................................. CACGGTGCAGGAGTAGCTTTGTCTACCCTGTCC 1429999 33 100.0 33 ................................. AGCAACTTAGCCTTAACAGTAAAAGGCACATAT 1430065 33 100.0 32 ................................. TGCTAAAGGGGGTTAGTGATTGCCTAAACAAT 1430130 33 100.0 33 ................................. TATGATTGGTAAACAGAATGTATCAGCTACTAA 1430196 33 100.0 34 ................................. TTTAACTCGGCAATCTGCTTTGCTACTGAATCAA 1430263 33 100.0 33 ................................. GATCACCTCTTTGTATCTGCCACAAGTACAATT 1430329 33 100.0 33 ................................. AGCAAGCTCACTATTTGTAAACTGATCCAGCTT 1430395 33 100.0 34 ................................. ATTCTTCCAACACCAAACCCGACTAATTTATTTC 1430462 33 100.0 33 ................................. TCATTGGCAGGTATCATTAACGAATAGTCGCCA 1430528 33 100.0 34 ................................. TCTTTGTGACGCTACATCGGCGAGTACTCCAACA 1430595 33 100.0 33 ................................. TACTGTCGTTACTAGCCTAGTTTCTTTGGCTGG 1430661 33 100.0 35 ................................. CATCTTTTTACTTAACCAGCTAAACATCCTCAACA 1430729 33 100.0 33 ................................. ATCATCAGCGGGTTTACTACGCTCCCAAATAAA 1430795 33 100.0 36 ................................. AATCACGGTTACATGTGTCATTTTGCGTTGCTTAAC 1430864 33 100.0 33 ................................. ATCGTCTGGGTTATCAGTGCTTTGGCAGCAATC 1430930 33 100.0 33 ................................. GCAGTACTGCGTGACACAGATTGCCCAGCGGTA 1430996 33 100.0 33 ................................. AATGACGTTATCGCTGTTTGTAAAGGTTTAACT 1431062 33 100.0 36 ................................. CGGTAGTTATGGCTACTGGATTTATCGCGTAGTCTC 1431131 33 100.0 32 ................................. TTGACGATGGACCGCAAATAAAACATTATTTC 1431196 33 100.0 33 ................................. TTTGACCACTTAGCCGCCTTTAGTTTCATGGTG 1431262 32 97.0 33 ...............-................. GCTTTCATGATAGCCGCAATCATTGGACTCTGA 1431327 32 87.9 0 ...............-.....A.........CT | ========== ====== ====== ====== ================================= ==================================== ================== 23 33 99.3 34 GTCACGCCTTGCGTATGGCGTGTGGATTGAAAC # Left flank : ACAGGTTCACTTTCCTAAAGTTCAACTTGAAAAAGGTACAGCAGCCTATGTGCTTCATCGTTCGACGGAAAAAGTAGGACAATTCTTCTTTTATGAAAAATACCAGGATCAGCAAGCGTTAGATTATCATGGGTCTACGCCTTACTTAAAAGAATTATTCAGCAGTATTGCTGATCTGCTTCTCGAAAAACCAGAAGTTAAACTATATGAAGAAGTGGCAGCCATTTCCCGATAAGTAACGTAGAATAGTGAAAAGTTCCTGCAAAGTAATGTTCTTTGCAGGAACTTTGTCTTTTAATGGGAAATAATGAGGTAATATGGGAAAGTCTCCTAATGCGAACCCTAAGTGCTCATCATTTTTGTAGGAGATTCGCAAACCAGATATAAGAAGGCGTTTGACCACTTCTTATATCAAAATTCTCTATTTAAATAAAGCACATTTCGGGGTTCGCAAAATCATAGGATTCAACCCAGGTAGTTATTGCATCTCACAATCGCCA # Right flank : TCAATCAATAGCACATTGTTATTGAGATCTGAAAATAGGTAAAAAAAGAACCTTCAGTGTAAACTGAAAGGCTCCTATATTTAGTCATAATGTCCTCTGCATTGTACGATTTCAATGACTTCATCCTCAACCTTATAGATGAGTCGATGTTCAGTGGTAATTCTTCTGCTCCAGTAGCCACTCAAATCATTTTTAAGGGGCTCGGGTTTTCCTATCCCTTCATTGTAGTTACGGTCAATATCCTTAAGGAGTTCATTGATCTTCTTAAGAACCTTTTTATCAGTAGACTGCCAGTAAAGGTAATCATCCCATGCGTTATCCGAGAAAATCTTATTCATCCTCTATAAGTTCCCTGATTTTACCTTTACCAGCCTTTAATTGGGCAATGGACTCCAGAAGTCTGTCATAGGTCTTCTTATTGCTTCTGATATAAAGATTTTCCATAAGATTGTTATACTCATCCTCTGAGATCATAACGACATTTCCACCTTGTTTGCGGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTTGCGTATGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 1443098-1445437 **** Predicted by CRISPRDetect 2.4 *** >NZ_AKVN02000001.1 Pelosinus fermentans DSM 17108 strain R7 ctg1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1443098 32 100.0 35 ................................ CGAATATCTTTGTCTGCCACTGCTAATGCTAAGGC 1443165 32 100.0 35 ................................ TATAGTAACTCCGTTTGTTGTCTCTGAGCTTCCTG 1443232 32 100.0 36 ................................ CATATTATGGGGAGCCTTGAATTTCTTTTGCATAGC 1443300 32 100.0 33 ................................ GCTCCGCTGTTTGATCCTGTGTCATTCGAGCTG 1443365 32 100.0 34 ................................ TATGATTGGCGCTAACTCGGAGGCTTGGTATGCT 1443431 32 100.0 33 ................................ AAATAGCCAGTATACAGTCCGTTATCAGACGTA 1443496 32 100.0 34 ................................ ATCTGTAAAGCTACCGTTGTCATGGAGTGTCGTA 1443562 32 100.0 34 ................................ TAAGTCCTCTCATGCCAATACCAATATGCCTGAG 1443628 32 100.0 34 ................................ TAGAGCTAGACATTGTTCTATCAAACATTTCTTT 1443694 32 100.0 35 ................................ AATTCACCAGTGCCGGCTTCAGCATCATTAACTTC 1443761 32 100.0 36 ................................ ATCGTCTATGAAATCAAACAACGTAGGTGTATCAAT 1443829 32 100.0 33 ................................ TGTCTGATGTGTTGACCATGCGTTATTTCTTAG 1443894 32 100.0 32 ................................ TTATTGTTTTGGCTAACACCGTTGGCGTATTG 1443958 32 100.0 33 ................................ TGTTCACCAGTTAACTGGTCTATGTATTCTTCG 1444023 32 100.0 36 ................................ ATCATCTGCATTGTCAATAAATGCAGTTTCAACCAG 1444091 32 100.0 33 ................................ ATTAGAAGTTGCTTTTTGGATAGCTTTGCAACT 1444156 32 100.0 34 ................................ CCTTAGTAATTGCCAAGGTGACGGTGTGAGCTTC 1444222 32 100.0 33 ................................ ACAGAAGAAGAAAAGGAAATGCTTGAAAACTGG 1444287 32 100.0 33 ................................ TCAAATCTGCACCTCTAAAGATATAAGTCTTGC 1444352 32 100.0 34 ................................ AATGTCACATGAGTAACCTCTATAATTCGCCATT 1444418 32 100.0 34 ................................ ATTGTTCGTCACTCCGTTTACCTATGATACACAT 1444484 32 100.0 34 ................................ CATTTTGATCATTTATTAGGGGCTAAACCCCATT 1444550 32 100.0 35 ................................ TTATTAACTCTGTAGCCAACCATATTTGTTTTACC 1444617 32 100.0 34 ................................ TGCCAAAAACGAGCCGAATTGCTGGCAGGTGAAC 1444683 32 100.0 35 ................................ TCACCAAGACTAGCTTTGCCAATAGCCTGTATACT 1444750 32 100.0 32 ................................ ACGTATTTGAAATTCAAGGTTTAGACCACCAA 1444814 32 100.0 33 ................................ CAACTGAGTTGATGCTGTTTTTAAGTCCTGTTT 1444879 32 100.0 32 ................................ ACGTATCTTAAAGCGATTGAAGCTCTACTACG 1444943 32 100.0 33 ................................ AATTAAACAATATTTTATAGAGCGATTTATTAA 1445008 32 100.0 33 ................................ AGATCTTCGGCAGCCAGTATAAAAGAGGAGTTG 1445073 32 100.0 35 ................................ ATAGGTTTTATTTGTGACTACATCCATTCGTGCAA 1445140 32 100.0 34 ................................ ATAATTAAAGATAATGAAAAACCTGAGCATAAGC 1445206 32 100.0 35 ................................ ATGTAAAACTTGTTAGGGGTTACATTTCCTTTATT 1445273 32 100.0 34 ................................ CCCATTGTAAGGTATTTCCTTGTGCCACTTTTCT 1445339 32 100.0 35 ................................ CGTTTTTCGGGTTTCAACATCAACCCTCTGGTAGA 1445406 32 90.6 0 ......................A...CA.... | ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.7 34 GTCACGCCTTGCGTAGGCGTGTGGATTGAAAC # Left flank : TTTAGAAGATTATCCGCCATTTTTCTGGAAATGAGGGTTTGGCAATGATGGTATTAATTACTTATGATGTAAGTGTGACCACCGATTCGGGAAAGAAACGTCTTCGCAGAGTAGCGAAACAATGTGTAAATTATGGTCAACGTGTTCAAAACTCAGTTTTTGAATGTTTACTTGACCCAGCGCAGTTTGCAGAGTTAAAGCATCGCTTGGAAAGCATAATCAATCATGAGACGGATAGCCTGCGATATTATTTCTTAGGAAGCAACTGGAAAAATCGCGTAGAGCATGTGGGTGCGAAATCAGGATATGATCCAGAAGGAGTTCTGATGATCTAATGCGAACCCTAAGTGCTCATCGTTTTCCTGGGGCATTCGCAGTCTAGAAGGTACAAGCCTTCTTGATGTTTATATAAGGAAAATCTTTTTAAAAATCGATATAATTTTCTAGTTCGCGAAATCATGTGTTTTGACCCATGGTTTTCTTATATCCCACAATTGCCA # Right flank : CTGAGGTGGAATCTCATCCTATCTCCGAATGCTTGGTGTTTATCCAAAGCAGTTGGAGTTATAGAAGAAGAAATGGGAACATACTGTATGGAATGATTAAAGAGGCAAAGAGGAGCTTTGTGAGTACCATTATATTGCCGAGGGAGAAGTCTTAAAAATAAAAGATACATTATGTGTCAAAGAACAAAAAACTTACAAAGTTGAGGGATCATAATGATATTTGTAAAACATACCCCTAATCATGCAGGTGTGGCTATATATGGTGATTGTTTAGATTTTGAGGAACTTTATGGTGCACTGCATGATGTTGTTGGTAAGGAGAATCAATATGTTGCCTACCAAGGTGTTCGTATAAGAGTGTTAGGGTTCTGCTATGAGCTGCGCCATGCTTTAATGGGGAATCGGGAATTTGAATTTGTTGAGAATGGTATGGATGAGAATCGGATGAAAGAGTTAGCAATGATTACTCCTAAGAAAAATATATATATAGGCACTCATAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTTGCGTAGGCGTGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //