Array 1 107576-105990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVMB010000010.1 Francisella tularensis subsp. novicida FSC595 FSC595_9_len123956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 107575 36 100.0 29 .................................... AGGATTTTTAATTGTGATTGATTCTAAAT 107510 36 100.0 27 .................................... TATATATTATTTAAGCGAGAACTTTTT 107447 36 100.0 29 .................................... TAGATATCTTGTTGTAAAGATTGTTTTTC 107382 36 100.0 31 .................................... CTTTTAGTAATATATTTTGCTAGCTCATCAA 107315 36 100.0 30 .................................... GCTGCTTGTATTGTTGCGCTGTCTGCTGTT 107249 36 100.0 28 .................................... ATGCTTCTACCCATTGGTAATGAAATAG 107185 36 100.0 30 .................................... ACAATCAAGGCTATATTTTTCTATTTATGA 107119 36 100.0 30 .................................... AGCTTATGCTTACTTTGTCATTTGGTAAGC 107053 36 100.0 26 .................................... AAGTATGAGATTCGTAGTATTGAAAA 106991 36 100.0 29 .................................... AGGTAATTAATAGTGTATTCGTATATCTC 106926 36 100.0 28 .................................... CGATCATCATCAGATGTTTCTGCATTTT 106862 36 100.0 29 .................................... ATGATTTTTTCATATTTTATACCTCATAA 106797 36 100.0 30 .................................... TTAATAGCTTTATATTGTGATTTTTTGGAC 106731 36 100.0 29 .................................... TCTTATTAATGCGAACGCTAACTTTTTAA 106666 36 100.0 27 .................................... ATACTGCAAGTCGTCGCTATCTGCAAA 106603 36 100.0 27 .................................... TTTTTATTGATCCCGTTAACCTTGTCC 106540 36 100.0 27 .................................... TTGATCTCTTTGAAAATATTGCCAAAC 106477 36 100.0 27 .................................... AAGCTAGATTTCCAGAGTTTGATACTA 106414 36 100.0 28 .................................... TTTAGCTCATGATGATGAGCGTTACGAT 106350 36 100.0 29 .................................... ATAGTGGAGGACTTAAAGGCTTTATAGAT 106285 36 100.0 29 .................................... AATCTAGATACTAAATCATCTAGGACATC 106220 36 100.0 31 .................................... TTTTTAATAGCACTATACTCTCATTAATTAA 106153 36 100.0 28 .................................... GAATCTAGTCTACCGATGACAGTCTTAC 106089 36 100.0 29 .................................... AAATTGCTCATTATCTAGAAATTTTTCAT 106024 35 77.8 0 ......................GC-....ATATT.. | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.1 29 GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Left flank : GAATATGTAAGAGAATTTTATCGTGCCTTTATGCGAGGCAAAGAAATTGCAGAGTATCCAATATTTTGTTATGAAACTAGGAGGGTGTATGTTGATAGTCAGTTATGATTTTAGTAATAATAAAGTACGTGCAAAGTTTGCCAAATTTCTAGAAAGTTATGGTGTACGTTTACAATATTCGGTATTTGAGCTCAAATATAGCAAGAGAATGTTAGACTTGATTTTAGCTGAGATAGAAAATCACTATGTACCACTATTTACAAATGCTGATAGTGTTTTAATCTTTAATGCTCCAGATAAGGATGTGATAAAATATGGTTATGCGATTCATAGAGAACAAGAGGTTGTTTTTATAGACTAAAAATTGCAAACCTTAGTCTTTATGTTAAAATAACCACTAAGTTCTTAGAGATATTTAAAAATATGACTGTTGTTATATATCAAAATGCTAAAAAAATCATAGATTTTAGGTCTTTTTTTGCTGATTTAGGCAAAAACGG # Right flank : TGATTTCTAAATTAGAATTTGCTAATATAATACTACTTGAGAATTTATAGGCTTATAAAAATGGATTTAATGCAGATGAAAGATAATGCTAGTAAAGCTTCTTCATTATTAAAAGCAATATCCCATGAGTCGAGATTATTGATATTATGCTTGCTACTCCGAAGAGAGATGACAGTAGGAGAGCTAGCAGAGTACTCTAGTTTGAGCCAATCGGCATTTTCTCAGCATTTATCAGTGTTGAGAAATAATGGTCTGGTCAAATGTAGGAAAGAGGCGCAAAATGTATATTACAGTATCAACGATCCTTCGGTAACAAAAATATTGGAGGCTTTGTACAGCATCTATTGCGGTGATAAAAATTAAAAAATTTAAAGTTTATATTAGTAAAATCTAAATTAGATAAAGTTAAAATAAGGAGACTAAGATGAATAAAGTAGAAAAAATATCAGTAAAGCAATTTCTTGACCTACAAAAAAAAGAGAAGGTTAAGCTAATAGATA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAGAACTTTAAATAATTTCTACTGTTGTAGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 31922-32527 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVMB010000014.1 Francisella tularensis subsp. novicida FSC595 FSC595_13_len77262, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 31922 36 73.0 34 T...T...AA..AG.C.....AA.......-...... AATTATCAAAGCAAATGAAAAAGATTAGCTGTAA A [31929] 31993 37 83.8 169 ..........T.AG...........T...TG...... TTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAAATCAACATTTTGCTGTAAAACTGTTTTTGTGATTATATTGTTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAA TG [32018] 32201 37 100.0 35 ..................................... TTGATAATAATAACTGTAATCAAGCTCAAGTAAAC 32273 37 100.0 36 ..................................... TTGAGGGATATCTTCTCTTAGTCCTGTGATAGATAT 32346 37 100.0 34 ..................................... CTTTAAAAACCTTGCGTTATGATTCTGATGGGCT 32417 37 100.0 37 ..................................... CAATCAAGGGTATTAAAATCGTTATTGGTATGATTAA 32491 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================================================================================================================================================= ================== 7 37 93.8 58 GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Left flank : AACGACAATGAACACATTTGAGATTACAACGTCTAGTTGTTTCCCATGCCATCCATTTAAGTTGATGTTTCACTAAATTCTTAATCCAAAACGAAATATAATTTTGCTATAACTATTATAACAAATAATCATTAAACTAACTGTATAAAGCTAATAAAAATAACTTTAAAAAAGATATTTTAAAGACCCTTTTAGCTTGGTTAGTTTGAGATTTTTATTTATACTTTATAAATACTGATAATCTCAATATTAGTTATGTTTACATTTTTGTTGTTAGCTATCGCGTTTATAGCAACCCTATATGCTTTATACTACTTTATTTTAGCTATTTTTAAGCTAATTGTAGCGATATATCATTTTAACTATTTTTTTTCTAAAAATGATTCAAAAAATTAATTAATTCATAAAATAAATTGCTTAAAGTCTATCAAAACTTTGTTTGTCTATTTCTGAAAGTAGTATTTAGATAAAATCTTATGAAAAATTATTTTTAAATGAGT # Right flank : GAGCCAAAACAAACCTAGTGTTTGCAAGGCTTTGAGAGTTTTTTAAAATGGTATTTTTTCGCAAATACCCTAATTGTAAAAAAACGTAGACATTTTGCGAAAAAATATCTAAAATTATTAATGTACCAAATAATTAATGCTCTGTAATCATTTAAAAGTATTTTGAACGGACCTCTGTTTGACACGTCTGAATAACTAAAAAACAAAAATTTGCCACCTAAGTGGCTTTTTTTGTTTGGAAATTAATATATCTTGTTCGCTTCTTAGCTCGATTACATCAAGATGGCTGAGAAATTTAATATGGAGATTTCTAAATATTTGCGAGATTTCCGCCTTCAGTGACAATTAGAGATTTTACTATCAACGATCATTACAAAAGTTATAATATTCACATTGTATACATTGATGATCCGATGCAGATGAGTCTGGCTTATTACCACTATCTAAAGTACTAAGGATATCGCTGATAGTTTTTATAAGTTTGTTGATTAACTCATCAG # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:-2.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //