Array 1 18156-17596 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000006.1 Hazenella coriacea strain DSM 45707 Ga0244714_106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 18155 29 100.0 38 ............................. TAACCGCTTAACCTCTTCCCAAAGCGGATTCCTACTAA 18088 29 100.0 39 ............................. TATTGTAAAACATTTCCATGTCGCCTTCTTTCGCTTCTA 18020 29 100.0 37 ............................. TGGAATCCTCCACGAGTTGGCAAGCTCTACGTCCCAA 17954 29 100.0 37 ............................. AGAGCAGCGAACAAAGATAAACGCTTTTTGTATATCC 17888 29 100.0 37 ............................. GGTTTTTTTCCTGTAACTCGTTCATACTCCTGATCCA 17822 29 100.0 37 ............................. GACTTTGCTTTGAAAGTCCGTAAATGTTAACCCCAGT 17756 29 100.0 37 ............................. GCATTTCTTTACTATCGTTACTCATGTAATATCCCCG 17690 29 100.0 37 ............................. AATACAGTAGTGACTGATACAATTGTTGCGGTCAATA 17624 29 93.1 0 ........................A...A | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 99.2 38 GTTTTATATGAACTACGTGGAATGTAAAG # Left flank : AAACCTTTGAAGGCGTGGTGGTAACCATCTTTGTCATCATCACTTATGATGTTGCTGAAAAAAGAGTATCCAAAGTCCATAAAATCTTGAAGAAATACTTAGTTTGGACCCAAAATTCCGTATTTGAAGGGGAGATCACACAAGGAAAACTAAAACAATGTCTAGCGGAAATCTATGCAATCGCTCATCAACAAACAGACTCCATCTATATCTACCAAGTAAAAAATCCGAACCATATCAAAAAGATAATATACGGACAAGAAAAGTCTTTTGAAAACATGTTCCTGTAATTACGTTTCATATGAGCAAAGGTAATTTTGCAGTAGATCTCTTTTTTAGAAAAAATGCACTAACCCTTGTAATATCTAGCTTTTTAAGTAAAATTAAGACTAAACCGATTTATATGACTGGAGGTTCACTGCAAAAAACACGTTTAAGTAGTGAAAACCATCCTCGCAAAAGCTGATGGTACAAGGCTTTTGCTGTTATCGGATATTAGG # Right flank : GTTAAATTCATTCACTAATTCGTCTATGGGGTCTTAAGGCTTTTATACCAACTCCATTAACTATACACAACCCCCTTGTCTTCTCCTTCCATCCCTGTTGCGATTTAACTATCTTGCAATACAAAATAGCTCGATCGAGCGAGTTTTTATTTTCCGCCTCCTATCATGCATTACAAGATAGCTAACAAAGAAATCGTAGAAGGAGGGCGCATACTTGTCGTCAAGCCAGATGTTGAAAGGGATTTTGGAAGGTTGTTTGCTGGCGATTATCTCCAAAGGTGAGACTTATGGGTATGAGATGATTGAAAAGTTGGAGTCATATGGATTTAGGATGGTGAGTGAAGGGAGTATTTATCCTGTTTTGATTCGTATGCAGAAGGAGAAGTGGGTTTCTTCGACGATGAAGGCTTCACCTACGGGACCGAAGCGGAAATAGTATTCTTTGACAGAAAAAGGATGGGTGGAGTTGACAGAGTTTAACAAACGTTGGAAGGAGCTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACTACGTGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 26820-28231 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000006.1 Hazenella coriacea strain DSM 45707 Ga0244714_106, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 26820 29 100.0 39 ............................. ATCTACTTTTCCGTCAATTTTTACTTTAAGGGGATAAAG 26888 29 100.0 36 ............................. TTATAAATAAGACATTCTCTAACTACAATGGTTATT 26953 29 100.0 38 ............................. TCAGATCTGGGAGATGAACAGGAAAAGGAGTCGAGCGA 27020 29 100.0 37 ............................. AACTTTCTCCCTAGCTCTATAACGGCTTAATTTTCTA 27086 29 100.0 37 ............................. AAAGACACGAGAAAGAAAAAGACAGCACCAGCATCTA 27152 29 100.0 36 ............................. AGATTTGAAACAGCTGTCAAAACAACTGGATATACC 27217 29 100.0 37 ............................. CTGGATCCAGACGACGAAAATACGTAAGGTAAAGTAA 27283 29 100.0 37 ............................. CTGGATCCAGACGACGAAAATACGTAAGGTAAAGTAA 27349 29 100.0 38 ............................. GCTGCATATGTTTCCAGGCGATGAGGTGGACCAGGTGG 27416 29 100.0 37 ............................. AAAGTACGCACTTGCTTCAAGTGTATTAAATTTTTTA 27482 29 100.0 37 ............................. ACCGAATCAGCCGACCAGGTAGATCCAAGCAACCAAG 27548 29 100.0 36 ............................. AATTAAAAATTGCGGCGGTTTTCCCTGATTTAATCG 27613 29 100.0 35 ............................. GTAACTACATACGTAGTTATATGCGAAGTCGAGAG 27677 29 100.0 37 ............................. TATCAGCAATTAGCAACTGAGCCTCTGAAATAATCCT 27743 29 100.0 37 ............................. GCTTGTACAGCTTTTATGTACTCATCTGCTAATTCGC 27809 29 100.0 35 ............................. GAGTATACATACGTTTTACTCATCAGTTATTCTCC 27873 29 96.6 37 ...............T............. TCATTTGACCTATTATCTTTTGAAGATCGGATTGAAA 27939 29 100.0 35 ............................. AATACTTTAGTATCATTGCTCCCCATCCTCTCCAA 28003 29 100.0 40 ............................. CCCTCCCTGAGAAGCTCCCAACGGGAGGAGTCGCAGGGGA 28072 29 100.0 36 ............................. ACCTCTTTACTCGTATGGTCTCGGGGGCTTTCTTTT 28137 29 100.0 37 ............................. TATGATGTGCTATCACAGGAAGAAGTGATTCAAATTA 28203 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 22 29 99.8 37 GTTTTATATGAACTACGTGGAATGTAAAG # Left flank : AAGTCTACCTGCCCTCGGATCTCAAAAGAGTCGCCTTCCAGCTGATAATCTTTCAAAAACACTGCGAAGGTAAAGTTTTTACTCTGCTTATTTTTCTTGCCATCATAATAGTATAACTTCTGGTAGTATTCTTGATCTGAGGTTTCCAAACACTTTTTGATCAAACTGACAAACAACATATGGTAGGTAATTGGAAGCTCTTTACAATGCAAAGTACATTGTACTCTCATCACGCTCCTCCTTTCTCCTAATCTATTATAAATTGACTTCATTATACATGTTTAGGCGGGTCATTTTTGGGCAACCTAACAAAATATTTTGCAGTGGATCTCTTTTTTGGAACATCTCCCAAACACCCTGTTATTACTAGGTTTATAAGCGATTTATCCATATCCGATAAAATAACACTGGACATCTGCTGCAAAAAAGCTCGTTTTTCACCTATCCAAAACCTTGGAAAGCCTTGGGAATAAAGGTTTTTAGATGATGTGAATTTCAGG # Right flank : GAGCTGTGGGATGAACTTCCATTGATGAGAATTCCCGTTCGCAAATTTAAATCTGATCGATTGGAGACGATGGGTTTCCACGAATGGCTAAACCATAAAGATAAGGGAAATCTGATATTAATCGATGTGAGACCCAAAGAAGAGTATGCCTATGACCATCTGAAGGGAGCTATTTCGATCCCGATTGATGAGTTGATAATTCAGTTTGAAAAGTTGCCTAAGGATCAGGAAATAGTTGTATATTGTCGAGGTTCCTATTGTATGTATGCCACAGAGGCAGTTGAACTACTTCGATCTAAAGGGTATAAAGCGGTTCGCTTAGAGGCTGGGATCTATGAGTGGAATCAGCTGAAAAGGGTTATGGCTAAAAATTAATAAAAAAGCATTTGATCTTTATTTATCAACTTCTTTTTGGAAGGTGAATGCGTTGAAAAGTTCTTCCCCTCAAGTACAAGTGGGAGTAAAAGAAAATCTTGTGCAGTTTTTATTATTAGTGATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATGAACTACGTGGAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 372385-371896 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 372384 30 100.0 36 .............................. AACCTGAGCCTTTTCCGATGCCTTCAAATCAACTTT 372318 30 100.0 36 .............................. TTTGTTATATATCATATCACAATAAAAACCCCCATT 372252 30 100.0 35 .............................. AACTGGGATATTCATAATCCCAAGGTAGTCCACGA 372187 30 100.0 37 .............................. TCATCAAGCTCATTCTTTTTCTTTAAGCTATTTATTT 372120 30 100.0 36 .............................. ATATGAAATCGAAAGGAATGATCGACTGATGCAGAA 372054 30 100.0 34 .............................. CAGTTATCGCAGTAACAATAAAAATTGTTGTAAT 371990 30 86.7 36 .........C....G.A.T........... CCTCCAGAAGATTTGTTTTATTTTGTCTATGGCTTG 371924 29 93.3 0 .........C...............-.... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.5 36 GTAGAACAATAACATTGGATGTATTTAAAT # Left flank : TTTCTTCAGGACCAGTGTCTCCTTTGAATTGTTCTTCTTTAGCAAATTCCTTTGGGAGTTTTGAGATGATAGTTTTTCATCGGCAAGAAAATATCCAAGCACATTAAAGCTGTTCGTTTATTTCCATTGTAAAAGGGGTGTGTGTGATAAAGGATTGTACCAAAACTCCCGCCTTTTGTTCGAGTGTTGGATGAAATTCTTTTCCATAAATCACTTGCTTAGGAGGGTAGATGACATCGATCAGGAGACATTACACCTGCTTAATCCTCATCTCCATGAAGCTCCATGATAAAATGATGGATTCTAAGCACTATACTTATAGTTTTTCTCCAACCTCGATCCATTCTAAATAGAGTCCAAGTATTGATATCACACTACTTTCTCAGATTTCTCCCATCAATTTCTAAAAAAGGACAACCACTTGGAGAAAAACGCCTCTAACCCTTGATACACATGTATATATGTAGTAAGTTTGAAATGATAAAGCCTATAGTGACTGG # Right flank : ATACTTAAAAGTTTTTTCCTTAAGTTTGGTGAGGATTACTCAGAATCGATTTAGGGGCTAAATAGCACAATAGAAAGAAGATAATAGCTGAAATCAAGACATAAGATCGGCATTCATTTCCTCTACTCCATTAAATTAGCCCACCAATTGACTGATGGGCTAATTTGCTTTTTCCAATCATGATCCCACCTTTTTAGGGATAGATATAATAACATGGTTAATTTGTATACCATTGTTGCGATCATTTCTAGGTGGGCAAATTCTTCGGTGCCAATATCTGTAAGCAATCCTTTTACCTTATCTGGAAGTGTATATCTTTGATTCAAATAACGCAGGGCGGCAGCAAGTTCCCCATCAGCTCCCCCGTACTGTTCAATTAAATACTTAGCTAAACGTGGATTACACTTACTTACTCGAACAGGATATTGAAGCTTTTTTTCATAAACCCACATCGTCTTATTGCCTCCTCACATCTCCCATGGCCAAGGTCCTTCTGACCA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACAATAACATTGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 373384-373005 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 373383 30 100.0 36 .............................. AAGAACCCTTTAGGGAAGTTGTGGAACTTCTGAGAC 373317 30 100.0 36 .............................. GAGATAGCAAATGGAACAAAGCCCACAAGATCCTAC 373251 30 100.0 36 .............................. CAACGATCACACTTTCTTTCTAGCTCGATCATCGAA 373185 30 100.0 54 .............................. AGTTCGACAATGTTCCCCATTGCTTGATTGTGGGAAGTAGAACAACAACTTCTT 373101 30 100.0 37 .............................. GCAACACGGAAACAACAAAAGAAAATTATCCAAGAAA 373034 30 86.7 0 .........T..........A....A..C. | ========== ====== ====== ====== ============================== ====================================================== ================== 6 30 97.8 40 GTAGAACAACAACATTAGATGTATTTAAAT # Left flank : TCTTCAGGACCAGTGTCTCCTTTGAATTGTTCTTCTTTAGCAAATTCCTTTAGGAGTTTTGAGATAATAGTTTTTCATTGGTAAGAAAATATCCAAGCACATTAAAGCTGTTCGTTTATTTCCATTGTAAAAGGGGTGTGTGTGATAAAGGATTGTACCAAAACTCCCGCCTTTTGTTCGAGTGTTGGATGAAATTCTTTTCCATAAATCACTTGCTTAGGACGGTAGATGACATCGATCAGGAGACATTACACCTGCTTAATCCTCATCTCCATGAAGCTCCATGATAAAATGATGGATTCTAAGCACTATACTTATAGTTTTTCTCCAACCTCGATCCATATCTAAATAGAGTCCAAGTATTGATATAACACTACTTTCTCAGATTTCCCCCATCAATTTCTAAAAAAGGACAATCACTTGGAGAAAAACGCCTCTAACCCTTGATACACATGTATATATGTAGTAAGTTTGAAATGAAAAGGTCTGTAGTGACCGGG # Right flank : GGATTTTTGCAATATTTATTAAACGCAAAAGACTATCCTATACCGGGTGGTCTTTATTCGTTTTATACATGGGGAATGGTCAACCCAGTAACACCATGTATTCTCCAATTACTTTTCCGATTTCTTCAGGACCAGTGTCTCCTTTGAATTGTTCTTCTTTAGCAAATTCCTTTGGGAGTTTTGAGATGATAGTTTTTCATCGGCAAGAAAATATCCAAGCACATTAAAGCTGTTCGTTTATTTCCATTGTAAAAGGGGTGTGTGTGATAAAGGATTGTACCAAAACTCCCGCCTTTTGTTCGAGTGTTGGATGAAATTCTTTTCCATAAATCACTTGCTTAGGAGGGTAGATGACATCGATCAGGAGACATTACACCTGCTTAATCCTCATCTCCATGAAGCTCCATGATAAAATGATGGATTCTAAGCACTATACTTATAGTTTTTCTCCAACCTCGATCCATTCTAAATAGAGTCCAAGTATTGATATCACACTACTT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACAACAACATTAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 374011-375532 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 374011 25 88.0 42 ......T...A.....T........ TTTGTTTCGTGAAAGGAGAAGAAACCGAATTCTTTGTATTTA 374078 25 100.0 40 ......................... TTTCCCCTAAAACCTTTATCCGAACTGTGTCACCCATTTA 374143 25 100.0 40 ......................... ACGAGGTGGTTATATCATGTCAAATCGAGTTATCCATTTA 374208 25 100.0 40 ......................... ACGAGGTGGTTATATCATGTCAAATCGAGTTATCCATTTA 374273 25 100.0 41 ......................... CAATCATGCCCTCGCTGACATCTGCCTCAGCGTGTTATTTA 374339 25 88.0 42 .........CA.....T........ GCGGCTTTTGCTTCAGTGGTTTCAGCAATTGGACCTTATTTA 374406 25 76.0 21 .........C......TA...GG.A ACTGAGAGGGCACATAATTTA A [374418] Deletion [374453] 374453 25 88.0 41 .........CA.....T........ GTTTGTAGAGTTTAACTTCTTGAAAGATCTGGGTTAATTTA 374519 25 88.0 40 .........CA.....T........ ATATGGAGATGATGAGGTTGTTTCCAATTTCGATTATTTA 374584 25 88.0 42 .........CA.....T........ AGCGGATCAACTGGATGAAATGGAACGCTCAAAAACCATTTA 374651 25 88.0 42 .........CA.....T........ GATTCATATTGTTGATTTAACAAATCAAGGCATGTTGATTTA 374718 25 88.0 41 .........CA.....T........ GAAAGATTACTATAAAGATCGCAAACATCCCAAGAGATTTA 374784 25 88.0 41 .........CA.....T........ AACTGACGCAGATATGACTCCATTCGCTGACGTTGAATTTA 374850 25 88.0 41 .........CA.....T........ AAGGTCATCCTTTGATCGCCTTTTCTGCTTGCTTGGATTTA 374916 25 92.0 42 .........CA.............. GTTTGTGGGTTCACGGTTGAGCGAACCGGATCAAGTAATTTA 374983 25 88.0 41 .........CA.....T........ TGAAGGTGGAACATTCACAAATACAAAATCAACCTTATTTA 375049 25 92.0 42 .........CA.............. TTGGTGAGCAATTTGGGGAGACAAGAGGGGAAATTTAATTTA 375116 25 92.0 40 .........CA.............. ATAAGCACGATCAGTGAGGCGCCGATAAAAATAATATTTA 375181 25 92.0 40 .........CA.............. TATCTGAATTCGATGGATGTAACCCAAATACCAACATTTA 375246 25 92.0 41 .........CA.............. AACATACTAGGAACATACTTACCAGTTGAAAATAGGATTTA 375312 25 92.0 41 .........CA.............. ACTTTCATGTCTTTTTTATTGTCCATGATTTCATTGATTTA 375378 25 92.0 40 .........CA.............. GCGATTTCCCGAGATATAAGAGAATGCCAGAGCCAATTTA 375443 25 92.0 40 .........CA.............. ATAACAAAGAATGGTGAACTGCTAAATGCACCATTATTTA 375508 25 92.0 0 .........CA.............. | ========== ====== ====== ====== ========================= ========================================== ================== 24 25 91.0 40 AATACAACTACTGTTGATGTTCTAC # Left flank : TGTTATATCAATACTTGGACTCTATTTAGATATGGATCGAGGTTGGAGAAAAACTATAAGTATAGTGCTTAGAATCCATCATTTTATCATGGAGCTTCATGGAGATGAGGATTAAGCAGGTGTAATGTCTCCTGATCGATGTCATCTACCGTCCTAAGCAAGTGATTTATGGAAAAGAATTTCATCCAACACTCGAACAAAAGGCGGGAGTTTTGGTACAATCCTTTATCACACACACCCCTTTTACAATGGAAATAAACGAACAGCTTTAATGTGCTTGGATATTTTCTTACCAATGAAAAACTATTATCTCAAAACTCCTAAAGGAATTTGCTAAAGAAGAACAATTCAAAGGAGACACTGGTCCTGAAGAAATCGGAAAAGTAATTGGAGAATACATGGTGTTACTGGGTTGACCATTCCCCATGTATAAAACGAATAAAGACCACCCGGTATAGGATAGTCTTTTGCGCTTAATAAATATTGCAAAAATCCAGTTT # Right flank : CCCCAGTCACTACATGCTTTATCATTTTAAACTTACTACATATAGACATGTGTATCAAGGGTTACGGGCATTTTTCTCCAAGTGATTTTATTTTTTAGAGACAGGTGGGGGAAATTTGGGAAAGTAGTGTTGTATCAATGCTTGGACCCTATTTTGATACCGATTGAGGTTGGAGAAAAATCATAAGAATAGTGATTCTCCATCTTCCTTTAATGATGTTCCTAAGGATATTTCTGTAAAAGCATGTTCGTTTATCATTGTTATAATAGAGACAAAATCATAGTCTTTATCAATGATGGCTTCTATTTCCTTTCTCATTTTCATGATATTCGATGGAGTGATCGGTCCGCGGAAAACGGAGTTTTGATAATGAACCAAGTACTTTTTACAAACTTTAAAGACTTTATGGACACGTTTTTCGTGAACATCATATAGGACAAACGCATAATTTGCATTGATTTTCTTTGTTTTTGTCATTATTGTTTCTCCCGATCATCAAA # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATACAACTACTGTTGATGTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 4 385140-385830 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 385140 30 100.0 36 .............................. TAAAGATAGTTATTGTGCTTTGATAAATGTAATTGT 385206 30 100.0 36 .............................. GTTTTGACTTGGTATGTTCTACATACCCCTCCCCGC 385272 30 100.0 36 .............................. GTTCTTTAGCCGCTTTCTTGTAATAACGTCTCACTA 385338 30 100.0 36 .............................. TGCTGGCTGTTGTGGTTACGATCGCTTTGATCGTAA 385404 30 100.0 36 .............................. CGTTCAACCTGTTGATACATCTAGCTTTACAGTCGT 385470 30 100.0 36 .............................. GACAAGAGTTGGTCTTGATTATAAAGAAGATGGTAA 385536 30 100.0 36 .............................. CAAAAGGGACCGTAAGTGAAGCTGTTAAGCCCTTTT 385602 30 100.0 36 .............................. TATAATGCCCTGACGACCCAGTTCGGCTTTCTCATA 385668 30 93.3 36 ..............GT.............. AAGAATGTATTCACGAGTCACAACACTCTGAAGTGC 385734 30 93.3 37 ..............GT.............. TTTTCAATTTCTGATGGGAAAGTTTTAAAGCGTGCAC 385801 30 90.0 0 ..T............AG............. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.9 36 GTAGAACATCAACATGAGTTGTATTTAAAT # Left flank : GTAAACTTCACATCATATGTTTCCGTTTTCCAATAGATTTAATCTTAAAATAAATACATGTATATCTTTAAATGCTTCAATTATTTGTACTGCTCTTCACTACGAATCGAAATACCATTCTATCATCTTCAAAGTTTCCACCCATATGGAATCATTTAATCTTCATTTATCAGTGGTCTTGATAATCGTAGTTCAATGTTCATCCTTCATAAATTGACCTTGCAAAAAAGTGAAGGGTTCCGATCCGTGGCAGTACAAAGTTATTTCGTGTGAAATATCGAACCTCATTAATGGAAGATGGAAAAGATCTATTCTCATATTTTTTCTCCAACCTCGATCCATATCGAAATAGGGTCTAAGTATTGATATAACACTACTTTCTCAAGTTTTCCCCCACCTGTCTTTAAAAAAGAAAATCACTTGGAGAAAAACGCTCGTAACCCTTGATACACATGCATAACTGTAGTAAGTTTGAAATGATAAAGCCTATAACGACTGGG # Right flank : TACGCTTAAAACAGCCAATTCTTTTTGGTTATAACGAGTTATACATCAAAGAGTGCAAATTATTTATATACTATCCTTTTATATTATCCGAATTAACCACACAAATCGGAACCATCTGATATAATTCATAAAAAAGGAGGGATCTGGTGAAAATCAACGTAGAATTTGAAGACCCCATAGTCAAAGAGCGAGAGCTCACGCTATGGCTCACCCTGTTCAGTTTTGCGGAACCATTTTTGCTGTGGTTCGCTATGGTCAAACTAATTGATCTTGAACTGGTGGGTGTCTGGTCCATCCTTATCTGCCTAGCACTTCTCACAATCCGCTTTATATACATAGCCAAGCTAATTGCTTACCCTTTGGTATGGGCGTGCCTTGTAGGAATGATCTCCAGTGGCTATGTGTCCATCTGGGTGGATGTTCTAGCTGTATTAGTCGCAGGTGGCATCCGTTGGTGGGTGATGCGAGCGAAAGGGAAGTAATTTGTTAACATGTGAGCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACATCAACATGAGTTGTATTTAAAT # Alternate repeat : GTAGAACATCAACAGTAGTTGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 387553-388048 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 387553 30 100.0 36 .............................. AGATGTACAGGCTTGGAAGTTGTTAGAGATTGAAGA 387619 30 100.0 35 .............................. TTCGGTACCAAGAAAAAGAACGCGGCGGCTTTCCT 387684 30 100.0 37 .............................. TAAAGGTGATTGGAGTAACAACGGATCGCTTCAGCGA 387751 30 100.0 36 .............................. TCGTAACAGTATCTTGGTTAGACTCCCAAAAACCGG 387817 30 100.0 37 .............................. CCCAAAAGGTATCATTTGTCCTCGGATATACTTTTTT 387884 30 100.0 37 .............................. TCGTTGCCACGTGCATACTTATCCAATACTCCCAATA 387951 30 90.0 38 ..............GTA............. TGTTCACTTTGGGTTATATATCGTTGTGTAGTTTGGAT 388019 30 80.0 0 ..T.....C.....CT..G.A......... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 96.2 37 GTAGAACATCAACATAGGTTGTATTTAAAT # Left flank : CTTGCATTCCCTTTTGAATGAGATGTTCATTCCAGGAACGGAGACTTGCTAAGTGAGAATTAAAAGTACTGGGAGCAATTCCTTTACTATCAAGAAATAATTTGTAATCCACAATATTCCCAGCAAACAGTTGTTGTGGAATCTTCTGATAGCGATTTTGGAACTATTGTAAATATGATTTCATAGAATTCAGATAAGATAAGATTGTATTGTGGGATTTTCCTTTCAATAGAAGATGCTTCTCAATATAACGATGATGAACGAACATGCTATTACAGCAATTTCATTAGGTATGTCTTTACAGAAGCACTATTCTTATAGTTTTTCTCCAACCTCGATCGATATCGAAACAGGGTCTAAGTATTGATATACCACTACTTTCTCAAATTTCCCCTACCTACCTCTAAAAAAGAAAATCACTTGGAGAAAAACGATCAAAGCCCTTGATACACATGTATTTATGTAGTAAGTTTGAAATGATAAAGCCTATAGTGACTTGG # Right flank : TATCCTGTGGAATGGTGGTTTTGTAACAGGTTTAAATTGCATCCATATTGGAAAATGAAACGAATACAGATCACTGTGTCTAAATGCGTTTGTGCAAATTTAAATTGAAATAAAAAAGAACCAACTATCTAGTAGTGGTTCGGAGGTTCATTATATTTACACAATAGTAGATGTTCATATCTACTATTTAACACCCCTTTTTCTGAAATACAGAAAGGTCAGCTACAGAGAGAATTGCCACTAAAGCAAGAAGAAGACTAGGTGACAGATCTGAGAAGTTTGGTAAGAAGGAAATTGAGATGATGAAGGCACTTGCTAAATCTGGTACACCTATTATAGATATTGCCTCTATGCTAGAAACTTCAAGTGCTACAGTATATAGATACATTAAGAAAGAGAGATGAAAAACAAGTGATTCAATCTATCATAAATCTCTTTATAAAGTCTCATGTGGTTCTAGTCTTAAAAGACTTGGTTGGGATATTTAATACAAACCCATT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACATCAACATAGGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 390690-391177 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 390690 31 100.0 32 ............................... GAAATTCTTTAGATTGTTTTAGGCGATGATCT 390753 31 100.0 35 ............................... TGTAACCCCAAGCCCCGCAGTTGTAACACTTAAAA 390819 31 96.8 35 ..............................C CATTTTCTCCAGCCATAAATTCTGCTAGATTTGGA 390885 31 100.0 34 ............................... AAGGCCATAGCTGAAGTACTAGGCACTAGCAAAT 390950 31 100.0 35 ............................... TTTTGTTTGGATCGGGATCATTCTTCATTTCATAT 391016 31 100.0 35 ............................... ACGAAAACTAAATGGAGAATGAAAAAACCAGTCGA 391082 31 100.0 35 ............................... AGTTTACCGTGGTATTTTCCAACATGAATTATTCA 391148 30 77.4 0 ......T........TC.C...-..C...A. | ========== ====== ====== ====== =============================== =================================== ================== 8 31 96.8 35 GTAGAACATCAACATAGGTTGTATTTAAATA # Left flank : TTCCGGGATTTTTAGTTCTAGAGGTTTGCTGACAAAATATGAATTGCATCAATGGAAAGCCTTGTGGTAAGGTGGATAAGTTTTGTTATCAAGTTTATTCTTTTTTCCTCTAGTAAAATACTTGGCTCATTATTAAAACTCAGTTTCTATGGACTGATCATTCCATCAGATATCATGGAAATGAGAAAGGAAATGGAAGAAATCATTGATGAAAACTATGATTTTGTCTCAATTATAAGGATGATGAACGAACATACTTTTAGAGAAATCACATTAGAAACATCATTATAGGAAGATGGAGAAGCCACTATACTTATTATTTTTCTCCAACCTCGATCAATATATAAATAGGGTCTAAGTATTGATATAACACTACTTTCTCAAATTTCCTACACCTGTCTTTAAAAAAGGAAAAACACTTGGAGAAAAACTCCTCTAACCCTTGATACATATGTATATATGTAGTAAGTTTGAAATGATAAAGCCTATAGTGACTGGGG # Right flank : AACTCTGGAAATTCGCTAGAGCTTTATACTAAAAAGTCTTATGTCAGTTGATTATGATCAAAATCAAAGTGTATTAGATCAGATACACTGATTAAACCAGCTTATCTCTAAAGCTGGTTTAATTTATTTGGGGTAAAAGAAGCGAAGACTGATTTTGCAACCATTTGCACAACAAGTTGTATATTTAAGAACATATAACATACGGAAAAACAAAGTATGTGCACCTTTGATTTATTCCGTTTGTGTTTCATCCATTCCAATACGAAACCTAATATAAAAAGACCAATTATTAATGTAGAGAGATCAATATCGATCATCATGGATTATATCCTCCTCTTAAAGAAAAAAATACTTTGTAGCTTTAAGCATCAAAGTATTTTTCTTGTTGAGCTATTGAGTTTTTAAAGTTCCAGTTCCTTTGGAATAATGTCTGTCATCTTCCGTCTTACTTATTTCCAAATAGTAATCTTCTATCAGTTCTGAACCTAAATTCTCCGATT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACATCAACATAGGTTGTATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 394422-393665 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 394421 30 100.0 36 .............................. GGATCATGCCCAGCGACTTCTCTATACTTTTCGTTC 394355 30 100.0 37 .............................. CTTAATAGTGTTTCTAACATATGGGCAGATCAATCTA 394288 30 100.0 37 .............................. TTAGAGGGGTTCTTTTTTGTGTTATGGCTTTACAACC 394221 30 100.0 37 .............................. AATTTCCTGCTTTTTTGTTTGCTCGGCGATCCACTTC 394154 30 100.0 37 .............................. CAGGACAAGAACGGACGCGGGGCAGTACATTATCACA 394087 30 100.0 37 .............................. ACCAATTCATCAAATTTACTTCCTCTTTTTAACCAAC 394020 30 100.0 36 .............................. ACAACACGGAAATGAATTTGTCGTCGTCGTGATTAA 393954 30 100.0 35 .............................. TTTATGACTTTGTCGGATATGTAAGGAGAACAGTG 393889 30 100.0 34 .............................. ATACTCGTGATGTTGATTCTAGTAACTTTAGGGT 393825 30 100.0 35 .............................. TTATAGAAGATTTAAAAATAGGCAACGTAATTTCT 393760 30 100.0 36 .............................. GGATGGGATATATGTGGATGTTTGGAGGATTGCGGA 393694 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 36 ATTTAAATACAACTACTGTTGATGTTCTAC # Left flank : TAGTTCCAATAATGGTAAGGTTATCCTGTGAAACCATGGGATAACCTTTTTTATCGTAGGATACTCAATGATAGGTTTTCTGATCGCCCATCATCTAAATGCTTTATGGAATACTATATGAGAATTTACGGTCACGAAAAGTAATTAGCAATGATAGTTCAAAAATCAATATTCTTAATACCGTAACACTACAGAGTAGTAAAGGATGAACAATAATATGTCAGACTTATTATTACTACCAGATCTTAAAACAACAGAACCACCACAAGAAAATGAATCCGACATGATGTTTAAAGTGGAAGCAACTTATCCACCAGAACGTTGCCCTCAATGTGGCTTTGACAGGCTATATAAACATACATCAAGAAAACAACTAATCATGGATCTACCAATTTGTTTAAAGCGAATAGGCTTAGAATTAAACCGCAGACGTTATAAATGTCGTGAATGCGGCTCAACTTTTTGGGAACGCCTTATATCCATTGACGAAAAGCGTAGTA # Right flank : CCCAGTCACTATAGGCTTTATCATTTCAAACTTACTACATATATACATGTGTATCAAGGGTTACGAGTGTTTTTCTCCAAGTGATTTTCTTTTTTAGAGATCTGTGGGGAAAATTTGAGAAAGTGGTGTTATATCAATACTTAGAACCTATTTTGATAGTAATCGAGGTTGGAGAAAACCTATAAGAGGTCATCGTACCCAAAGAAGAAAAGTACACGTTTCGGGACAAGGGAGCCGAACCGGCAGACCTCCACGCAAACGGGAACTCCCCCGATACTCAGCGGTGATCTACCGATTCGGGTCATGGAGCGTGGGACTCCGATTAGCAGGATTTGAGAAGAAGAAATCTCCGAAACGAACGCTATGGGAGAAACAGGAGGGGAAATGAACCGCACCCTCGATAGGCTATGGGAGATGAGTGCAAAGGATGGATTTCCCACTGTGGTTACATGGGACATGTACGCACGGAAGTATGACCTATACAGTGTATCAGCGTTGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATACAACTACTGTTGATGTTCTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 8 396068-396759 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 396068 30 100.0 37 .............................. ACTGTTTTATTTGTTTTATTTGATTTAATTATAATAC 396135 30 100.0 36 .............................. CCCGCCGGGAGGCATATCCTTTTATCTTTCTCTTTC 396201 30 100.0 35 .............................. ACAAAGTAATAATCTATCATCAATATTTTCTAGCG 396266 30 100.0 35 .............................. ATCGTCTTCGCCTGGGCGATTCGTAAACCTCGCCT 396331 30 100.0 37 .............................. TGATGTGGGGTAGTAAAGGGGTTTTGGCTGATTCAGT 396398 30 100.0 36 .............................. TAATCAATATCTTTTTCTCTGTTAACTTTCATTCTT 396464 30 100.0 36 .............................. CTTGCCATCTTCTCAAAATACGCGACCTCGTCTAGT 396530 30 100.0 35 .............................. ACCCCAGCCCAAGGGAGGGCAGGGGAGGGCATAAG 396595 30 100.0 39 .............................. TGTTGTCACCTCATCTATTTGGTTATCAATGTGCCGAAC 396664 30 100.0 36 .............................. GATTCTTTTTGCTTTCTCTTTTGAATCTTTTCTTGC 396730 29 93.3 0 ................-.A........... | G [396744] ========== ====== ====== ====== ============================== ======================================= ================== 11 30 99.4 36 GTAGAACATCAACATGAGTTGTATTTAAAT # Left flank : TCCCCTCTTGTTGGACTACCTACCTCCTGTAAACACCCATGTTTGATTGAAGCTTATATGGTATTATTGTTTTTCCTTAGCATTCCACCAAATAATCCGATTTAAATACTAACTGTTTTTGAATTATTAAAATAATAATTCCACTATATATTCCGAAGACCCCCCATAAATAAGAGGTGGATTATAAATTGACTAGAGTCACCAGCAATTCGCTTTAACTTTACTTATTTCATCAGAAGATATTGCACCCACCACCATAAATAGCTTTATAAACTTGCTTATAAGAACATCATTAAAGGAAGAGAAGCACTGTTCTTATGGTTTTTCTCCAACCTCAATTGGTATCGAAATAGGGTCTAAGTATTGATATAACACTACTTTCTCAAATTTCCCCTACCTGTCTCTAAAAAAGTGAATCACTTGGAGAAAAACGCTCGTAATCCTTGATATACATATATCTATGTAGTAAGTTTGAAATGATAAAGCCTGTAGCGACTGGG # Right flank : TTTCTATTTTTCACTTTGTTGCGTCGGCGAGATCTCAATAAATACTACAGTTGTAAAGTGGAGGTGAAACAAGATAAGGGAGAGTTATTCTCTTATTCTATTTACTCTATTCCCAATTCTATAATCACTTGATAGAGTTTATAGAAGAAAGGGGAGATTACGATGAGAACAAATATAAAATGGTCGTTATTTTCTTTAGTAGTTGGTACTTTGTCCTTTGGTATTATAGTAGTTTTATGGCTTTCACAAAAAGTGAGTGCTAATCAGTTTTTTGCTTTTACTTTTTTATCGCTTTTAATTTTATCTTTTTCTAGTGCATCATTAATTCGTAAAAAAAATATATCGAATGAAAGAACATATGAATTATATAATGATCCTTTGGTAAAAGAGAGTGTATTGCCATCTATTTGGCTCCAAATGTTAAATCATAAAGATGAAGGTGAAAAGTTGATGTGGGGGGCCAGACTTTTGGGTATTGGATGTATGATTGGGTTCATTTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAACATCAACATGAGTTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 9 420124-420294 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMAG01000003.1 Hazenella coriacea strain DSM 45707 Ga0244714_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 420124 30 100.0 41 .............................. CTGTACCTCTTCAAAGTGTCGGCGGTTTTCTTCTATGATTT 420195 30 100.0 40 .............................. GAGGGTTTCCAGTGAGGGCCAGATTGAAAATACATCTATT 420265 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 3 30 100.0 46 GTTTAAATTGCATCCATACTGGAATTGAAA # Left flank : ATGTAGCCCTTTCCACAAATTGCTGGTCTGGAAAGAAAACAGCTTTTTCATTTGTCTTAACTAACCCTGTAGGTCTAGATTGATCCTCCATTGAATCACAACCTACTAAAAAAATTAAAAGGCAGAATACCATATACCACTTCCGCATAATCAATCCCCCTTTAGTAATTGAAGAGGTCTTACATCTTAAAACTATCTCACCCGATTAGGTGTTTTTTATGTCGTGGACGGCATCCTTCCCTCCTTTAGTGAAGGGAGCAAGCGTCAGCTTGCCATCAATCTACAAAAAAAGAGTAGTCTTGTCTGTAATTAGACTTTGTCTACAATCTGAGACCATGTACCAAAAAGTAAACTTCTACAAAAGAAACAGTAATCCTAGTTCAACCATTATCTATACCATGTCTGCAAACCTCCCGGGATTTTTCAAGTTCCAGAGGTTTGCAGACATAAACATGGATTGCATCGGCGAAAAGCCTTGTGATATGCTGGGTTTGTAACGG # Right flank : AGTAACATATCCGATTGGTCCACTTATACTTTCTATAAAAAAAGCCGCCGTACCCTTGTCGAGGGTACGGCGGCTTTTTGCTGGTCTTTACAAGCCTACTTCAATCTTGTATTTCCAATTACTACTTATGGTTGACTTTAAGGATATCGATGACTTCCTTTGTCGCCTGTGCAATCAGCTTGTCATCAAATTTAGCGTCTTTTTCATCACGATCAGAAAGTATGGCAAGGACAATCGGATCACCCTTCGGTGGCCAGAGGATCGCTATGTCATTTCGTGTGCCATAGAATCCGCCTCCAGTTTTATCTGCAACTTCCCAACCTTTTGGTACTCCCGCACGAATTAATGCATCTCCAGTGGTATTTCTCTTCATCCAATCTACTAATAACTCACGTTTTTCCGTTGGGAGTGTGTCACCGATTGTGAATGCCTGGAGACTGGTAGCAAGTGCTCTCGGCGTACTCGTATCATGAGTTTCTCCCGGTTTAACGTCGTTTAAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTGCATCCATACTGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //