Array 1 34038-34309 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSH01000002.1 Leptospirillum ferriphilum strain Sp-Cl contig_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 34038 28 100.0 33 ............................ AAAAGTCAGCTTTCTCATGGCGCAGGCGGCTGC 34099 28 100.0 33 ............................ AGCCAGGCATTGCAGTCCGGATATATTGTCTAC 34160 28 100.0 33 ............................ AAATCTCGCGGAATCTTTTTTCTCGGGAATTCG 34221 28 100.0 33 ............................ CGGAAAAGACATCCGAAAATTCTACACGACAGG 34282 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 CCTTCACCCCCACATACGTGGGGACTAC # Left flank : TTCCTTGCCACTCTCCGACCCCGTAATCTTCGGCGATCTTCCTATACCATTTCTTCACCCGGGCACCCTCGATTCCACGTAGCTCCTCAATGGAGGAAGGGGATTCCGACAGGTCTTCTCCGAACATGAGCCGATAGAGTCTTTTCGCCGCATTCATCCTCTCTAAGGGATCGAGATGAATCCGGACTTGCTCCACGAGCCGGGAAGCGTTCTTCCCACCAGGCATCCCGGAGGAATAAAAACGAACTCCCGCCTCTCCCGTCCAGACAAGGAGAGTATCGCACTCGGCGGCGAGTTTCACCGCCTCATGCGTGATCGTCACACCCGGCTCGATCAGAAGGCAGGAGATCATCCCCACGGGAATCTCAATATCTCCGTCCTCCCGAGTCAACAAAAGGCAATGGTCGGAAACCCTCAGGTGTCCCCTCTCGATCGCCAGAAAGGGGGACCGGGCTTTGTGGAGAAGAACGGTTGTGTCGGCAAGATAGTCCATTTTCTTC # Right flank : CCCTTCGTTAAGCGGCATCTTCTTCCATGAAAAATCGACCTCTGATAGGAGGGACGACACAGGCTGTTTTTTCAGTCCTCCAATAGGGAGGGAAAAACGATTCCATCTCGATGGGAAGATCTGCGGACGATTTCCCGGTCAGTTCCGTCCACACGTCAACAGGAACCGTTCTGGCAGGCAGGCTTTCCCAGACGATCGACCCATCTTTATTCAGTTGTTCCACCTGAATTTCATTTTTGCGGACATTCGACCATTGCCTCTTTCCAATCCCGAACAGTCCCTCCTTCAGAATTTCGTTGACGGCATCGATGTCTCCAACACCATGGAAAATCACCTCATCCGGAAACAAAAGAACGTGTCGGCTCAGATTATTTTTATTGCCGGGCAACACACTCACTATCTCCTGAGCTTTTTTCACGTCGTCATTGCCATAAGTCACGAATTCAGAATAGGTGTCCCATCGCTGAACCCGCCAATTCTGCCGCCGGGAACGGACGGGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCACCCCCACATACGTGGGGACTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 38791-38216 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGSH01000002.1 Leptospirillum ferriphilum strain Sp-Cl contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38790 28 100.0 33 ............................ TTAAAAATAAAAAAAGGAAAGCGGATGAATTCC 38729 28 100.0 32 ............................ ACAAGATGAGAACTTTGTCAAAAAGGACGCCA 38669 28 100.0 33 ............................ GGGCGTAGTAGTCTTCGACCGCCCCGACCTGTT 38608 28 100.0 33 ............................ CAAAGCGCCTCCCCGATCTCCTTGGTTGGTCTC 38547 28 100.0 33 ............................ GCTCATCACCTGGGCCGCTGCATCGACGCTTTG 38486 28 100.0 33 ............................ AATGTTGGTTTTTTCTCTGCGCATCGATGAAAA 38425 28 100.0 33 ............................ GACATTGTTTCCAGGATAAACGGGGATTCGGAA 38364 28 100.0 33 ............................ CTGAATTGATGCCTCCGATGAATACCTGCAAGT 38303 28 100.0 32 ............................ GGGAGGATGAAAGTAGCGATTATAACCTTGGC 38243 28 89.3 0 ..G.......................TA | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.9 33 GTAGTCCCCACGTATGTGGGGGTGAAGG # Left flank : CTCCTCGGGGGAGCGGCTGAAGAGAAGAAGGCCGAGAAGAAGAAAAGCAGGCAGGCAAAACAACGGCAGGAATCGATCGAGGCTGGCCGGGTGAACCCGGAGGTGGTCAATAATCTGCCTGAGGAAGAGGAAAAGGAGAAGAAAAAAGAAACCCAACTACAAAATCCTTACCCTCCTTACGAAGCCTTTAATCCAGGGGTGCAATTCGACTGGCGGATTGAGATCCGCAGAGCATCGAAGGAGAAGGTTGGGTTTGTTCTGGCGGCACTCGAGCGGATCTCCGCCGATCCCGTTGTCGGGGCCCATGCGGCGAACGGTGCCGGAAGAATTTCCATTACTGGGGATATATACCGGATGTCCCCGGGAGAAAAGATTATTGAAGGAAAAATATCTCTTGGGGATGGGTTCTTCGACGTAAGCGGAAATTATGCCGGAATTCTCTCTGAGTGGAGAGAGATCATTCTTTCCCGGGACTTTTCAAAGATCGCCTGAAGAGAAGG # Right flank : GTGGGTGATGCAGCTAGAGAACTGCGTCTCGGAATAGTTCCCACATACGCGGGGACTACGTTAAATGGAATAAGATCACTAAAAAAGGAGCTTTTGATGGATGACCCTACAACGAAAAAGTTTCTTGATCTTGTTACTGAAGCCTTCCGTGAAGGAGGATGGCTGTCAAAGTCAGATTATCCATTCCGTAAGGAACAGGAACAGATGGCTCTCAGAATCGCCCGTTTTCTTCCTGGTGAAAGGGTTCCTTTCCCTGTGACAAGAAAATTCGATAATGAAGATGGGAGCGGAACGATCGAAAAGAAAGTTGACCTTCAGGTCTGTAAGGTTCTTCCTGTGGCGGCCGAAACAGGAATTGGGAAAACACTGGCATATCTCATTCCATTGACACTTTTTTCTGCCCTGACGGGAAAGCGCGTTGCCGTCAGCACGTTCACAAAATCCCTGAGACGACAGGTCAGAAACGGACGCGATATGGAAATTGCGTCAAGATATGCCCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGTATGTGGGGGTGAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //