Array 1 52331-52603 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGJ01000024.1 Gilliamella apicola strain P54G Gilliamella_apicola_P54G_contig31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52331 29 100.0 32 ............................. TGAACTTGTAACAGCATCATTAGAGTTTAAAA 52392 29 100.0 32 ............................. AATTTTTGCATTTTCCGCAAATCGCCATGCCG 52453 29 100.0 32 ............................. GACAAGGCGTACAAGCTTTCGGACGGGCGAGG 52514 29 100.0 32 ............................. TAAAAATATGTTCCCTTGATATTGACACCTTA 52575 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : TATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCAACCGATTCGTTAATATCAGCTTAATAACATTAATTATGCTTTCAATAAAAATATTGGTTAAATCAATATGATTTGATTAGAAAATAACCTAAAAAGTTGATAAAAATTTTAATGTTGCTATTTTAATTATAAAACAAACAGTTATAATTAGAGTGTTCCCTGTATACATAGAGATAAACCGTCGATGTGTTAATATTGCATATCATTTTTTTGCTATTCAAAAATCGCAATTCTGTATTTCATTGTTTACTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAATTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTGATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AATAGTAGGCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTGTAAAAAAAATATTGCTACCGCCATCGACCAGTTGAATGATTTGTGAGAAAAAACAAAATCGCCTGATGAAAAGCAACTATACCCTATTACCATTACAAAATTGCAGGGCGCGCAAAGGTGGGCAGTCAAGGCCTTAACGATTCAGATACCTGCTCATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATACAACTAATATGTATAAAATATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGCGGTAGGATTATCACAGCGTCAGGGCAAGGGTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGATTTGGTTTCCTGTCCTAAATGTAGCAGTACTGGCAGAATCATAGAAGGGGCAAACGATTTTATTATCGATGGC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9550-9338 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGJ01000010.1 Gilliamella apicola strain P54G Gilliamella_apicola_P54G_contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9549 29 100.0 32 ............................. CTGAGGGTTTGCTTTATCAACTCCCTGTTGAT 9488 29 100.0 32 ............................. AATTCGTGTGTTAGTGGAAATGCGTACGTATC 9427 29 100.0 32 ............................. CTCAGTGACTGATTATGGTCTTGATAGCCCTG 9366 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : GATATATGGTGGAGTTTATAACCTGTTTGACAAAGATGTCTCAAATGCTGACTTCGGTAAAACTTTAGAAGGTCGACGTTACTTCATAGGTACCGAGATTAACTTCTAAATTAACTAATAAGTATTTTCCTATAAAAAAGATGACTGTTCAAACAGCCATCTTTTTCTATTTATACTGATATAGATTATTTACAATCTAAAAATAGAAATCCCTTTTTTTACACATCGATAAAATAACATTAGTGCAATATCAACATAGTAATTTTTAGCTATTTAATAAATCTAATTACACATTTTAATGTATTATTGTTTTTAATCTAATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTACCGTTAATTTAAATTAAATCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTCACGAAATGGATTACATCCCGTGGATAGCGGTATCAACTCCAAAAGGTGTTTATGCTCATGAGATGGGACACGCATTACATTAGCTACACCAGGACGAAATTGATAATATCATTAAGAAATTGTGGGGCGAGGTTGGGCACATGCAATTAGTAATTATGATCTACATAACAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCGCATAGAAGCTAAAAAGCGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGATATTAAATGAATAAGTTTGATTTATTAGTTGAGCAGGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAACAATTGCAAAAAATTATCGACCAAGCTGACGACAAAACGGAAAAACACATGTTAGGTAGGCTTGCTGAAGCTCTGTTTGTTATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 85162-84582 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGJ01000048.1 Gilliamella apicola strain P54G Gilliamella_apicola_P54G_contig53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 85161 29 100.0 33 ............................. GGATACTCTTTATCAGGAGTTTCAATGGCTAGC 85099 29 100.0 32 ............................. ACCGCGTTAATTAGAAATGAATAATTATTAAT 85038 29 100.0 32 ............................. CCACCTCGTTTTACGTCAATAAAGTTTTGCAT 84977 29 100.0 32 ............................. CCAATAGTTGATATGGCATTTCAAAAAAAACC 84916 29 96.6 33 ............................A GATATCGGAATCCGTTTATCTCGTTGTTACTGC 84854 29 96.6 32 .............A............... GGTATTATCAGTGAAGAGGACTGGCGTGAGAA 84793 29 96.6 32 .............A............... TGGTAACGAACGATTACCGCTAACAACTAATG 84732 29 93.1 32 ............CA............... AATAGTACAGGAGATATAAAATGGAAAAAAAT 84671 29 93.1 32 ............CA............... CTTTGCATAGATTAATGGGGACTGTTATTACT 84610 29 82.8 0 ............CA.........T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.9 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : CGTTTCAGTATAAAAATCAATTAATAATTCAAATTAAATTTTTGGTGATAAAGAAAACATAATATTTGGTCACTATAAACCTTTACTTTTGAAATTGAGTAATAGATTTGAAATAACAGCCTTACATAATGGTTTTTACTTAAAAAAATAGTTGATTACTTTAAGATTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGTTTATGAAAATTTAATAACTAAGTTACACAAACAAATCACTCTAAAAATAGAATAGTTTTGATAACAACAAAGCACTAATAACATTTCAATAAAACTTACCATTTTCTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTTCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAAATAAAAACATAAGGTTATAAATACTGGTTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CAAATCCATCACAAATCCATCACAAACAGCCCTCGTGGCGGTTTTTCATTGCCCTTAATTTTTAAATAACATACCATTACCTAAAAAAGGAGATGGTATGAAAAGAATTGCATTACTAGGATTGGTTTGTTTTGCGTTGTCTGGTTGTGGTGATGATGGTGGCGGTAAAGTTACTAATGAGTTTTTGGTTGGTAAGTGGGAGTGTAAATTGGACGGTTACAGATCGAAAATGAAAAATGGAAAATTTACTGATTATGTTAGCGATGGGTTTAATATAATAAGGAAGAAAGAATTCAAAATAGAAAATAATAAACTGTATAGTATAAGTAAAACTGAAATGGATGGACTTAGTTTTTGGGAATCGAATGATTGGGATGAAAGTGATATAACTATTACTCATACGGGGCAAACAGTAGAGAAAAAGGAAAATAATCTAATAGAAAAATCAACCAATTCTCTAATTAAAAAATCACATGATACTTATTTAATGATTGAGGAAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 92349-92137 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGJ01000048.1 Gilliamella apicola strain P54G Gilliamella_apicola_P54G_contig53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92348 29 96.6 32 ............................T GCACAATAGCTGTTATCTCGCCGATTGTTTCA 92287 29 100.0 32 ............................. TCAAAATCCATACCACAATGGCTAAATACCTT 92226 29 100.0 32 ............................. TTTTTCGCAACAAATAAACTAATTAATAAATG 92165 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AAGATTGCTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGTTTATGAAAATTTAATAACTAAGTTACACAAACAAATCACTCTAAAAATAGAATAGTTTTGATAACAACAAAGCACTAATAACATTTCAATAAAACTTACCATTTTCTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTTCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAAGGTTATAAATACTGGTTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAG # Right flank : GAAATAGGCATGATGATCAAACAATCAGTGCTATCAATACTAAATGATCAAATACGACTAGGTAGTAGATTAAATCATCGTTGATTTTATTATCGAAATTTCATACCATTACCTAATAATAATTTAGTATATTAGGATAAATTTTATAAAACGGATTTTTTTAGTTGGTTCGATTGGGTTATTTTTGACGGGTTATAATGATAAATGCGATTCAGATGTCTGAGTCTTTGTTATATCTCAGAATTTTGCCAAGAAAAAACTAAAATTCCCATCTAATACTGAGTTTCCATATATTACTGATGATGAGATTTATATATTTGGAGATGCAAATGAAAAAGGATTAGGTGTCTGTAAAAATAGCGTTTATGATTATGTGAAAGCCAAGAATAATTTTGGAATGATAATTAAAAATAATTATACAGTTGATCTGAATTATAAAGTCAAAGATAAAACATGGTTCGCAACTAAATAGTTATTGAATAAAACATAAATAATCAAGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //