Array 1 142520-144141 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPK01000002.1 Holdemania massiliensis strain BIOML-A3 scaffold2_size244992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 142520 35 100.0 33 ................................... CAGCAGCAGAAGCAGAAACCCAAGCTCCTACAC 142588 35 100.0 35 ................................... ATTAAATACTTGTCCAGAGCCAGTTGCTATCGCAC 142658 35 100.0 35 ................................... TTTCCATACCATAAATCAATACCTAAAGTTAGACC 142728 35 100.0 36 ................................... GTCAAAACCGATTTTATTGACTAGAGGGTAAGGAAC 142799 35 100.0 33 ................................... GTCAATCACTGTTAGCCGATTAAAATCTACTCA 142867 35 100.0 35 ................................... AACTGTAAAGGGTGAAACACGAAAAGAACAGGCCC 142937 35 100.0 33 ................................... AGTATATACATACAATAAATTTGTTGATGTTTC 143005 35 100.0 33 ................................... CGTTGATTGCTCGCAAGGTGCAGGCAAAGCGTG 143073 35 100.0 35 ................................... GTGATAACCACTTTTTGATAGGTATCATAAGCTTT 143143 35 100.0 34 ................................... TACTGTACAGCTTCATTAAGTGTAATTAGGTATG 143212 35 100.0 33 ................................... CGTTATGTGAAGAATAAAAAGGGTATTGTTGTC 143280 35 100.0 33 ................................... GTTAATCTCAGGTGTTTTCGATACTCGCACCAC 143348 35 100.0 34 ................................... GGCGTCGCTTTGTCAATAAGTTCCTGTAGCACGG 143417 35 100.0 35 ................................... GGTTGTTGCTCCTAATTCGATACCAGTATCATTAA 143487 35 100.0 33 ................................... CTCTGCCGGCTGGTCGATGTCATGTGCTGCGAA 143555 35 100.0 33 ................................... TTGCTCTTAAATCCTTCGCCCTTGCCGGAAAAA 143623 35 100.0 34 ................................... TGGCATCTGAAAAACTTTACCGCCGAGTTGAATA 143692 35 100.0 33 ................................... AGAAGCCAAGAAGTCGGATTTTGGATTGATTAT 143760 35 100.0 35 ................................... CATCGTTTGAGCTTGAATCTGTTCAATACGAAGAA 143830 35 100.0 34 ................................... CATAGCGGGCCACGAAAAAAGATATCATAAATGA 143899 35 100.0 34 ................................... ATCATAGATAATTCCAAAATCTTTGTCATATGGG 143968 35 91.4 33 .............TG.A.................. CCACGTTTCTTACTTAATCAATCAAGGCTTTCA 144036 35 88.6 36 .............TG.A......A........... CTTCCTGTGGCTGAACTATCGTCGATGGGGTTATAC 144107 35 94.3 0 .............TG.................... | ========== ====== ====== ====== =================================== ==================================== ================== 24 35 98.9 34 GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Left flank : GGCCTGTAAACCGAATGAAAAAACGGCTAAAACGCTGATCAATTCTATAATGGCACAAATCCAGATCGCTCCCTCAAACCAGCATATACAGGCCATTAGGGGAGCCAGAGGACTCAGTATCAACAGCTTTTTTAACCGTACTGGCCGGCGGCAAAGCCAAGCTGAACTCAACCATACAGAACAGTTCAAAATCGTTCCCAATATTACGGTTACTTCCACATAACTGTTCACGCTTTTCTCCTTTCTCTACGTTCTATGATAGAAAAAGAGCTGAGCATTTTTTGTCGTTTTGCCCACCTGGTCTGTGAAAGTTCATTTCAGATAGTTCCGAATAATATATCAGAGATTTCTAGTGCGAACCTGAAGTGAACATAAAATCCCTGAGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGAGTTGCAAGTAGATTGGTTATTCGCTATTATAAAAGTAAGATAAGAATCACCTAAATATCTATTAGTTTCTTATTCGCT # Right flank : TCAAAGTCCTTTTTCTGTAAATGTAGACCCTTCCAAGTCGCATCGCTCACGCTACAAGGATAAGAAAGAACAAACAAAAAGAGGACTGAAAATCCTCTGTTTTATTTTGTGTGTAACACGCTGATTATGACAAAGGCAGCACAATTAGAATTACACCTCTTAAATTAAAATGAATCTGTATTATCTTTTAATAGAACTTCCTTTCCCCATTTCGTGTTTTGTAATGCTTTAAATATCAGCCAGCCTAACATACCTCCTGCCACATTCATAATCAAATCATCAATATCTGCAGAACGGCCAATGAAATACTGCAAAACTTCTATGAATAAAGAACTTCCTGCAAGGCTTATCAGGCAGATTCCTGCTTTGCGGCATTGAGGTAAACATACAGGAATTAAAAAGCCCAGAGGAACAAACATTGCAATATTCAATAATAATTGCTCGATCATTCGCGCAAATCCCATTTGATAGGTTTCCTGTATCCAAACAAACGGAATAAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACAGGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 188089-189524 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPK01000002.1 Holdemania massiliensis strain BIOML-A3 scaffold2_size244992, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 188089 33 100.0 34 ................................. ATAATAATTCATAAATGAACGACTATTCATGATC 188156 33 100.0 33 ................................. ATCTGTGTATGACTTATAATCTTCTGCATATGA 188222 33 100.0 36 ................................. GTATGCATACCATTTACCGCTTTGTAAACATCGACA 188291 33 100.0 35 ................................. ATACCATTCTTAACCCTCATTTTACCATTGACTTT 188359 33 100.0 34 ................................. ATGAAAATCATTGTTGACGATGAAGACTTTTACT 188426 33 100.0 33 ................................. TTGTGTAATTCTGTTGTTAACTGTAAATATTTC 188492 33 100.0 35 ................................. AAGGCTAATACATAATTGTTTTGATCCATCCAAAG 188560 33 100.0 34 ................................. AACAGTCAAGGGTGAAACACGAAAAGAGCAGGCG 188627 33 100.0 34 ................................. ACGTTAAAGGCGGAATCGTTTTAGTCGACACCCC 188694 33 100.0 33 ................................. GGTGCTACAAAGAGGAAAAGGTAAAGGAGGCGG 188760 33 100.0 33 ................................. ATGAATTATGCTGACCTTATCCAAGATTTTGAT 188826 33 100.0 34 ................................. ACTGGTTGCAATGTAAGGACCTGTTTCTAAATTC 188893 33 100.0 34 ................................. TATACCTTTACAGAACAGTACAATGCACAGCATT 188960 33 100.0 34 ................................. GTTCCGGGCAATCCGGTACAGTCGGCGACAAACA 189027 33 100.0 33 ................................. ATTAAGAATGCTGAAAACTTTACCAACCGTTCA 189093 33 100.0 33 ................................. TGCCATAGGACATCGAGCGGATCCAATACCTGC 189159 33 100.0 33 ................................. GCCGCAGCGATCGGTTTAACAGAAACAGGGGAG 189225 33 100.0 36 ................................. TGTTACACGACTTCGTGGTGATGATGATGAGATGGT 189294 33 100.0 33 ................................. CAGTTTGGTAATTGCCAAAGCGTTTTCGCGGCA 189360 33 100.0 33 ................................. GGATTTGCAGTTAAGTTTGTATAAGGAGGGCTG 189426 33 100.0 33 ................................. AATAGCTTATAAATATGTTATCTGCTTTAAATA 189492 33 90.9 0 ................T.............T.G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.6 34 GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Left flank : AAGATCAAGAATAAAAGAGCATTTCGCGCTTATGCTGAAAATAAAAGGAGGGAATCCCCAATGCAAAAAAATCTGACTACACTCTGCAAGTTAGCTGCCATTCTGATCGTGATCGCCTCTGTCTTCTATTTTTCTTCTGGAGCGCTGAACCAAACACCAAACTTAAATGTTTCCAATATGCCATTGTCACAAATCTTAATACCTAATTGATTATAATTATGATGACTTTGGATATAATGAAAACATTTAGGTTTTTCTTGAACTAATTAATTATAGAAAACTACTTTATGAGGAATATTAGGAACGATTTTCCATCCTGATAATTCCTCTTTTTCTTTGTATTATGATTCTGGTGCGAACCTGAAGTGAACATAAAATCCCAGGGAGGTTCGCACCGGAATTATGTGAAATATGAGGAAATTGTTGCAAGTAAGTGGAGGATTCGATATTATAAAAGTAAGATAAGAATCATCTATACATCTTTAAGTTTCTTATCAACT # Right flank : GAAAAACAACTTACATATATTCTCCTAGAATCAATCGTCGATTAGGATAGTCAAGTCGCCAGCTGCGCCTTGCTAAAAGATCCGCACCGCACAATCCTGCAACTTCCTGTTTCGTGACAGGATATAACACTCTATTCAATACCGGAACATGATAAAGTATTATCTCTGCAGCCCCGACTGTTAAGCGTAGAGAATCAAGTCGTTTTGCCGGAACTTCTGTCACGCCATCAACACCCATCATCGTTTCCAAATCCATAGGCATTGTGTCTGGCAAACTCTGATAAAGCAGAGATCCGCCACTGGTATCTGTATTTCCGCTGTCAAAACCCCACAACATAATCTGATCATTTGTTTGGACTCGCAGAACTGGCATATTATCCCAACCCACAAACTCATGGATTTCACTTTTCTCGGGTATTGAAGGCCTGACCCTCAATTGTTTCTGAGTTTCATCCCATTGCCAACAGGCATGTTGAAGAACATCCCAACCTAATAATCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCATGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 117448-115799 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPK01000010.1 Holdemania massiliensis strain BIOML-A3 scaffold10_size184263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 117447 33 100.0 34 ................................. GTAATCGCTTAATTGAATCATATCGGCCAGGTAT 117380 33 100.0 33 ................................. CGGTAAAGGCGAAACATCCGATATTGGTATCTC 117314 33 100.0 37 ................................. CGGTTTTAGATTTAGAAATGGACACAGCCTTAAGGCC 117244 33 100.0 33 ................................. ATCCATCCACAACACCTGAAGCGGTTGTTTTAA 117178 33 100.0 34 ................................. TTGCAGAAATGGAAAAGCTTTATAACAAAAAACC 117111 33 100.0 32 ................................. ATCTAGAAATGTCAAAGCTGGAAATTGATTAT 117046 33 100.0 35 ................................. GACAGGGGCAATTAAGCAATTGGCTAAATTAATGC 116978 33 100.0 34 ................................. ATCACGATTTACATTTCGCATGAAACCTGTTTCA 116911 33 100.0 36 ................................. GCAAGTCTGCAGACCGGAACCATTCCAGAGCTGCCG 116842 33 100.0 34 ................................. GATCTTTCTCTGCAATTTTTTCCGATTTCTTAAA 116775 33 100.0 34 ................................. TCGGTCTGATCATGAAGTATAAAAAAGCTCTGTG 116708 33 100.0 33 ................................. GATACTATTGAGCCTTATCTTTATCAAGACGTA 116642 33 100.0 35 ................................. GGTTGATTTAAAATCTTGATCATCAAGTTTCACTC 116574 33 100.0 35 ................................. CAGCGATCCGCTAATAATTTTACCGATGGTGTCCC 116506 33 100.0 34 ................................. CCTTTTAACAATGCCTTGAATTTTGCTATCTCCA 116439 33 100.0 36 ................................. CACAGCTTCCAGCTCATAGAGCTTTTCGGACAGATT 116370 33 100.0 34 ................................. AGAAATGATAAAAAAGGCTCATCGGAAGCCGGTT 116303 33 100.0 34 ................................. ACCGGCGCAGTTATCGTGCAGGATGCCGTTGAAG 116236 33 100.0 34 ................................. AAGGTTAACGCCGGTACCGGGATGACGGTTGTTG 116169 33 100.0 34 ................................. TTCAACCATTGTGGATTTACACCCTGACACTAAT 116102 33 100.0 35 ................................. TTCCTCCGCTCCGTAGATACCGTTACGCATAGCGA 116034 33 97.0 34 .............T................... TCGTCCTAATAAAAAGCCTTTTGGATCTTTTAGC 115967 33 97.0 33 .............T................... TCCCCAAGTTTTGGAGCTGCATCTGCTTTCCAG 115901 33 93.9 34 .............T.T................. ATTATCCTAATCCAGTGATATCTCATACAGTCTT 115834 33 84.8 0 ..............A....C....A...T..T. | A,A,C [115805,115812,115816] ========== ====== ====== ====== ================================= ===================================== ================== 25 33 98.9 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAAATAATTTCTGATTCATTATGCGGTCAAATCTGGGCTGGTAAAGCTAGTGTTGTATTTTATTGGTCACTCATAGCTTATCGATGTGAATGGCGATATGGAATACGTGCACATCGTGTAGCTTTAATTGATGTTGGACATGTCGGTCAGAATCTGTATTTGGCCTGTGCAGCTTTGAATTTGGGAGCGTGTGGAATCGCGGCATTTGATGATGCTATTTGTAGTAAGCTTTTTGAGTTAGACGTTAATGAAGAATTTGTTGTTTATACAGCACCAGTTGGCACTGTCAATTCCGATGATATAGAAAAAGAAAAAGAATTTTATCGTTTTGTAGAAGAAGAGGGATTATAAGTGCGAACCTGAGGTGAACATGAAATCCTAGGGAGGTTCGCACCAGAAATATGTGAAAAATGAGGAAAGTATTGCAAGTATATCGATGTTTAGCTACGATAGAGATGCGATAAGAATCATATGAGTACTGTTTAGTTTCTTATTAACT # Right flank : CAATTTTCAGCAAGAAAGCTAAAAAAAAGAACCTTAAAAAATAAGGTTTAAAACAATTTTTCGATTGACCAATCAATACCGCAAATTAAAAATTAGATATTAAAAATCAAATTGCTGATCTATGATCGTAATCACCTAATAATTTTAATACAAAAATAGACTAATATCACAAAAAATCAAAAAGTGGTATGATTTGGGTGCTATTTGAAAACAAAGGCAACAAAAAAGCCCTTAACTAAGGGCTTCATCATCAACTGGTGCCGATACCCAGAATCGACAGACCCGCTTTATACGATTCCGCAAAGCCTTATTTTAAAGGCTTTTTTAATAGTTCATTTCATCATTCGGCATCATTTTACAATAGATTTTAAAAATTTTCGTACACTTTTCGTACACTTTTTCATTTCAAAAAATGTTCAGCTTTTGCAATCACATCGGGATCTATTTTTTTGTTTTTTAGACACTCAGCCAGTTCTTTGATCAGACATATTGCCTGGATT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 124142-124510 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPK01000010.1 Holdemania massiliensis strain BIOML-A3 scaffold10_size184263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 124142 33 100.0 35 ................................. GTGATACTGGTATTGAGGTTGATCACCGGCTTGCC 124210 33 100.0 33 ................................. TTTTTAGCTTGCGCGTCTGATTTTTTAAGAGAA 124276 33 100.0 35 ................................. TTGTCCAGCCAGTATAACGGAATGCAACTATCAAC 124344 33 100.0 34 ................................. TTTTGCTGCTACCATTGCCTTGTATACTGCCAGC 124411 33 97.0 34 ......G.......................... ATTTGTTTTATCCTCCCATTTCTCGCAGGTATTA 124478 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 6 33 99.5 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GATGATTGTCAGCAATTAATTGAAAATCCACAGGCTTTATCGTCAGAAGAAAAACAGCTTCGGCAATTACGCGGACAATTATTACTTGATCAGCAGCCAGCTGCTGAAGGATACGCCGAGAGCGTTCAAAAGGAAATCAATTCATTTATCAAACAAGGATATATTGAAGAACTAGATGGTAAATTAAGCTTAACTAAGGATGGTAAAGGTGCTTTCTGGATCAGCTTATCAAATGAAGCTTATTACTGATGAATAAATAAGTAATGTGTAGGATAGTTACGATTTAATTAAGTGCTGGAATCATGTTCACTCATCTTTAAATAAAAGAATAACGGGTGCGAACCTGAGGTAAACATAGAATCCCTAGGAGGTCCGCACCAGAAATATGTGAAAAAGAAAGATAATGTTGCAAGTAAAAGAATTATTCGTTATGATAGTAGCAAGTTAAGAATCATTTAAATCTCTTTTAGTTTCTTATTAGCTGTCGCATCGCTCACGCG # Right flank : TGATCGTGGCCATAGCGTCAGAATCGTCCAAATTTTCACATTACTTATGCGACATATCCACTGGAATTTGTAATTCATGCTTGTGATTTGCAGAGTATTCAATTACTTGTAAATGTAAAGAAAGGTAGAAATAATTAGAAAAAGAGGTATAATAAAACTATAGATAATTGTTGTCAGGAGGTGTGTATATGTTTTTAGCACACTGGAATGAATCAAAACAACAAGCACAGTCTTTGCAAAATCATAGTGAAAATGTAGCATGTTTAATGCAAGAAAATTGTTTTTCACTTGGTCTTTCTTCTACAGGGAAACTTATTGGTTTACTTCATGATGTTGGTAAAGCAAATCCGATTTTTCAAACATATATGCTAGAGAATCAAATCGAAAAAAAGGGAAAAATCAACCACGCTGCAGCCGGAGCGCAACTTTTAAAAGAGAAAATAATAGATGCGGAGATTTCGAACAAAGAGATTAATCCAAGCATTAATAAGCTGTTATTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 132807-134244 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPK01000010.1 Holdemania massiliensis strain BIOML-A3 scaffold10_size184263, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 132807 33 100.0 33 ................................. GCAATCATAGTCATATTTTCTCGCCAGCATTTC 132873 33 100.0 33 ................................. AAAGTAAAACTTAGAAGCATCTAAAGTAGGCCC 132939 33 100.0 33 ................................. ATTGCCGACGCGTCATTTGCCGTGTTATGAACA 133005 33 100.0 34 ................................. GATTAAGTTATTTCTTGATGAAATTTGGATGGGT 133072 33 100.0 34 ................................. TGCCGTTGTTTAATATCATCATCAAAAACAGCAT 133139 33 100.0 35 ................................. TTTGGCGATTAATTAGAATAATAGCAATTATTTCA 133207 33 100.0 35 ................................. GATTAGCATACCGGGGTGGATGGACATATTGTAAT 133275 33 100.0 35 ................................. TGTACCTTTGTGATATTGGAACTGTTGGTGTCTAC 133343 33 100.0 34 ................................. AAGTGTAGTTTTGAATGATTTTAATAGGAAGATT 133410 33 100.0 34 ................................. CGTCAGTCGATCCTGCCGGCTCACCGCCGCCGTC 133477 33 100.0 33 ................................. CGTTTTCAAACTAAATCCTTTAATATCAACCCA 133543 33 100.0 33 ................................. CAGGAAAAAAAGATCATTCATCAAAAGGGTAGC 133609 33 100.0 33 ................................. TAGGTCAGGATGAGGCAGGCAATCTGTTAAACC 133675 33 100.0 33 ................................. TGCGAGATCCTCAATCAAAAAGGTTTCAGGGCC 133741 33 100.0 35 ................................. GCAGCCCTAAAAAGTACCCATCATGAGGCGGGGAA 133809 33 100.0 35 ................................. ATTGAAGCCCAGATCATAGAACCGGCGGACTAACG 133877 33 100.0 33 ................................. ACCCTTGATACCTTGAGCGCCGGACAAGTCAGT 133943 33 100.0 35 ................................. CGGAGGAGAGCATCACAATATCAACACTCGTAATA 134011 33 100.0 35 ................................. ACTCCTCACCCCAAAAGCGTGGTTTATGGCTTACC 134079 33 100.0 33 ................................. TGCTAATAAAATAAGCTATTTTGCTAATACAAC 134145 33 100.0 34 ................................. GAACTCGCCAAGGCGTTGGGTACATATCTCCAAA 134212 33 93.9 0 .............................GG.. | ========== ====== ====== ====== ================================= =================================== ================== 22 33 99.7 34 GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Left flank : GTGATTTGGATGCCTATCCACCTTTTTTATGGAAGTAGGCAAATTTATGTTAGTGTTGATTACTTATGATGTGAATACACAGACAAAAGCAGGAAGAACAAGACTGCGTAAAGTGGCAAAACAATGTGTAAACTATGGTCAAAGAGTACAGAATTCTGTGTTTGAATGTTCAGTGGATAATGCTAAATTAATTGAAATACAACATATACTGGAGGGCTTGATTGATAAGGAAGTAGATAGTTTAAGATTTTATATTCTTGGAAACAAATATAAAAATAAGGTTATTCATATTGGTGCCAGACCTAGTTTTGATGTAAATGATCCGTTGATTATTTAAGTGGTAGTTTATAAGGTGCGAACCAGAAGTGAACATAAATTCTCTGGGAGGTTCGCACCAGAAATTTGGGTGAAAAAGAATAATATTTAACAAGTGCCTACAAAGAACAGAAAGTAAAGCGGAAATAAGAATCATATTTCAATAGTCTTGTTTCTTATTTGCT # Right flank : TAACTGCTAAATTTTGGATAACCTTAGAATCATAGGGAAGATATGTTTCTTATTTGTAAACAGAAAACTTAATTGCGGAAAAAACTGTGATATACTAAGAACAAAGGAGTGATCCCAATGCAAGCAAAAAATGCACCACGTTATCAACAAATTGCAGCGGATATTGCTGCAAAAATTGCGGGTGGTGAATATAAAATTGGGGATAAAATTTTTGCGCGTTCTTCGTTAGCTTCACAATATCATGTTTCAAGCGAAACCGCCCGGCGTGCCATCTGCGTACTTTGTGATATGAAAATTGTTGAATCCATACAAGGGATAGGCGTTGTGATTCAATCTCCAGAAAATGCCGTAATGTATGTCAGACAATTTGATGAAGAGTATACGATATCGGCAATGAAAGAAGGGTTAATTGAATCACTGAATGAACAAAATTTAAGAAACAACGAAATAAAAAATCAGCTCGAAAGTTTGCTGGACACAGTTACGCGATTTAAGGCCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCACGCAAGTGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 174095-172851 **** Predicted by CRISPRDetect 2.4 *** >NZ_WKPK01000010.1 Holdemania massiliensis strain BIOML-A3 scaffold10_size184263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 174094 33 100.0 33 ................................. ATACCGTAACGAACCGATTTCAAAGGCAATGAT 174028 33 100.0 33 ................................. CCCTGCATAATTATTCGGCGTGGCACTGACTTG 173962 33 100.0 34 ................................. GCCGTTACAGGAAGCGACGCTGTTAAAAGACCCG 173895 33 100.0 33 ................................. ACAAGGTATTCGATAAAAGCTTTGACGACTTTA 173829 33 100.0 34 ................................. TGGGTTGAAATTTTTATCGGCTATAATGGCGGGC 173762 33 100.0 35 ................................. ATTAAAAGACGGGGAAAAAGTAGTGATTGATGGCC 173694 33 100.0 35 ................................. CGGTGTGGCTGTGTTTAACCTGCGCAAAGGGGATT 173626 33 100.0 34 ................................. CCATTTGCTCATAATAGGATAATGATTTATCAAG 173559 33 100.0 35 ................................. ATGGCGCTGTTTGCGGATCTGAACGATGGGACGCC 173491 33 100.0 35 ................................. TGTAGAGGGATCAAAGTATTGGTTTAACTGCAATC 173423 33 100.0 33 ................................. AGACCGAGATAATTACAGATCAAACGCATCCGC 173357 33 100.0 35 ................................. GCCAAGCAGTACCTGGCGGCGGGTGGCAACTATTT 173289 33 100.0 34 ................................. ACTTATCGTTCATTGGAACGAATCGCGAAACTTG 173222 33 100.0 35 ................................. AAAAGATCAACAAGCCCAGATATTAAACCGCCTAA 173154 33 100.0 34 ................................. ACCACTTATATACATACGCCACTCTATAGACCAA 173087 33 100.0 34 ................................. TGTTTTGCTTTTTCGGATTCCAAATCAGAGTTAA 173020 33 100.0 34 ................................. AAGTAATGGCGGTTTTTGCGAATTTTATGGTGGC 172953 33 87.9 36 ........A.G..A.T................. AGTGTAAAGAGTGTGGCAACATCAGCACTGAAGTTA 172884 33 75.8 0 ..T..........A..T..T.T..C...A.G.. | T [172864] ========== ====== ====== ====== ================================= ==================================== ================== 19 33 98.1 34 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GTTCAGCAATTTGAAAACAATCTGATTTATCCCCGAGTTGTAGGAAACTCAGTAGGCCTTCCAGGAATCTGGGTTCTGCTTTCCATCGTGGTGTTCGGCGGTTTATTGGGATTATTTGGCATGTTAATTGCTGTTCCAGCAACAGCCGTACTGTACACTTTATTAGGTGAATTCGTTAATAGCCGGATGCGGAAAAAAGGACAGGTTCTAGATGAGTCAGGCTTACTAAGTGTGAAGTCAAAGGTAAAAGAAGAAGCTTCACCTACTGCTGAGGATGAAATCAATTAAACTTTAAATATTAGAATTTCACTGCAAGGCTTTTAAAAGTCTTGCTTTTTTATACTTTAATCCAGTGCGAACCTGAGGTGAACATGAAATCCCTAGGAGGTTCGCACCGGAAATATGTGAAAAATGAAGAAAGTATTGTAAGTACAACGATGTTTAGTTATGATAGAGATACGATAAGAATCATATGGGTACCTTTTAGTTTCTTATTAACT # Right flank : TGTTCCATTTGTCTCTGTTAATTTACAAATCAGTATTGCTTAGCAGCTAACCAGTTCTTATCTCATTCAAGGATATACATCGAAAAAAGCCTGTCTTCATTTTAATATGAAAACAGGCTTTGCTACTTTTTCCAACTAATCTACATCTTGGTCTGCAACATTCCAAGGACGAATAACACAACCATCTGTTGTCGGTTCCGCAACATACACCTTCGCAGAATGATTCTGATCACTGACAACAAAGGCAAATTTGATATTGGTTCCAACACCCCAGCGGCCATCTTTATCTACACAGATTAAGGAAATCGCCTCAGCTTGTCCACGCTTACGAATCAACTTTTGGGTAAATTCCGCAACTAAAGTTGAGGCCGCCTCTTGGGGCTCCTGCCCCTGCTGCATTCTACGCACTACTTCATAGCTCAGACAGCCTTTCATAATTTCCTCGCCAACCCCCGTCGCTGCCGCGGCTCCAATATCGCTGTCTGCATAGAAACCACTTC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //