Array 1 118474-119083 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPS01000002.1 Haemophilus parahaemolyticus strain C2006000788 C2006000788_S7_ctg_1162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 118474 38 100.0 32 ...................................... TACTTGTCGGTTCGGGATATCTGATAGAATGT 118544 38 97.4 33 .....................................G TATACACTAGACGATCCGCAAATGAGCTTGATT 118615 38 100.0 33 ...................................... TCTAGCTTTTATCATATAATGCGGAGCAAAATC 118686 38 97.4 34 .....................................G TCCAATTCCAGCCCAATTCTCCGATATTTTTCCC 118758 38 100.0 33 ...................................... AAAATGATAGTTAAGGTTAAAGTTAAGATTAAA 118829 38 100.0 34 ...................................... GATCTAAGTCATCCACACAACGATTCAAGTAGCT 118901 38 97.4 33 .....................................G TGAACACTAATCTATCTGCAAAGCTACTTGATT 118972 38 100.0 34 ...................................... CTGCTTGACCCTCAAAGTTACGAATCATTTTAAC 119044 37 94.7 0 ................................T.-... | CA,T [119075,119082] ========== ====== ====== ====== ====================================== ================================== ================== 9 38 98.5 33 GTCGGAAGACACTGCCCTGTTCCAAAGGGATTGAGACT # Left flank : GTGATAGCCAAATGATGGTCATTGCTTGCCCAATGGCGTGGATTGATAGCGGTCGTAAAGAAGACTTACAACCGTTCCACAACGCTTTAACCCCAGCCGACGAGCTAATCCCGGAAGGCATTACCGTGGCAATTGGTACAGATAACATCTGTGACTATATGGTACCGCTCTGCGAGGGCGATATGTGGCAAGAACTCAGTCTCCTTTCTGCAGGCTGCCGCTTTACTAATCTTGAAGAGATGTCGAACATCGCCTCAATTAACGGACGTAAGGTGTTGGGCTTACTTTAAGATTTATCGGGGATTTTTAAGGAATTAAGACTAGTAAAATCTAAAAACTCTGGTAAAATCCCTTCCGTTTTCGACCGCTTGATAAGTGAATAGAATGTTAAAACTTGTACAACATTTAATCAAATCAAGACCCAACTCTCTAAGTCTCGGAAAAAGTTGGGAAGTGGCTCTCGTAAGCCTTGTGCCACAAGGCTTCAAAATACCACTGCA # Right flank : TAAGCCTCCATTCGGAGGTTTTCTTTTTTGTTGTTGCAAAATCTTAAAGAAATTTCACCGCTTGGTAGCCTTTATCTACCCATCTTTCGCCTATTCCGCTATAATTCCCACAATTTTCCCGCTATATTCCCTTTATCGGGAGATAATTTTCAAAAGGACATAATTATGATGCGTACAAACTATTGTGGCGAATTAAACCGTAGCCACGTTGGACAAAATGTGACTTTAAGTGGCTGGGTACACCGTGTGCGTAACCTTGGTCGTTTTATCTTTATGCAAATCCGCGACCGTGAAGGCGTGGTGCAAGTATTCTTCGATGAGAAAGATGAAGCGTTATTTAAAGTAGCATCCAGCCTACGTGCAGAAGCCTGCGTGCAAATTCAAGGTGAAGTGATTGCTCGTGATGAGTCGCAAATCAACAAGGATATGGCAACGGGCGAAATCGAAGTGTTAGTGAAAAATGTGTTAGTTTATAACAATGCTGATGTGCTACCACTCGA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACACTGCCCTGTTCCAAAGGGATTGAGACT # Alternate repeat : GTCGGAAGACACTGCCCTGTTCCAAAGGGATTGAGACG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 24485-23794 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPS01000007.1 Haemophilus parahaemolyticus strain C2006000788 C2006000788_S7_ctg_1172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 24484 37 100.0 46 ..................................... GCGTCAGTAGGAAAGGAAAAGTGCTGAGGTGGAAAATAGCATCACT 24401 37 100.0 34 ..................................... GCGTCAGTAGTACAAAGCCCGTTATCTTTCCCAC 24330 37 100.0 34 ..................................... AAACCATTCTGAAAAAGCTTGACGGGTAACTTTT 24259 37 100.0 36 ..................................... AACACGTGCCTGAAACGCTTCTAGAGCCTTTTGCAT 24186 37 100.0 34 ..................................... TGAACGTGCCGAACCGTCCCAACGATCAAAGCCT 24115 37 100.0 33 ..................................... ATAATGCGGAGCAAAATCATCGTTTACGTTTTC 24045 37 100.0 36 ..................................... ATCTTTAAAAATGTTATCGCCATCAACAAGGATTAG 23972 37 100.0 34 ..................................... CCAATGTCTTGTGCTGTCTTCCTGTTCAATCTGT 23901 37 91.9 34 ................................TG..A CAATTTGATATTTTTACCGATAACGGCATTTTGG 23830 37 94.6 0 ................................T...T | ========== ====== ====== ====== ===================================== ============================================== ================== 10 37 98.7 36 GTCGTAAGACACTGCCCTGTTCCAAAGGGATTGAAAC # Left flank : TGATAAACGGCTACAACGCATTCATCGACGAATGATCAATTTTGCGACACCAATTCAATATAGCGTATTTTTATTTGACGGTTCTGAAAAATTACTCAAACAATGCTTGGAAGAAGTGATGGCAATTTTTCATAAAAAAGAAGACGATTTACGCATCTATCCCTTGCCACCCAACTGTACTCAATGGCAGTTAGGAAAATCTTGTTTACCAGATGGCATTATTTGGACGGCAATGCCAACAATGATGAGATAACCATTGATCATCACTAAAATTCTGGTAAAATGCTCCGCGTTTTCGACCGCTTGATATGTAAATGAAATGTTAAGATCACTAAAATTCTGGTAAAATGCTCCGCGTTTTCGACCGCTTGATATGTAAATGAAATGTTAAGATTTGTTCAACATTTAACCAAATCAAGACCCAACTCTCTGAGTCTCGGAAAAAGTTGGGAAGTGGCTTCGGCAAGCCTTGTCGCACAAGGCTTGATGACCCCACTGCA # Right flank : AACAAAGAGGCTGATATTTACTACAAATATCAGCCTCTTTATCTACTTGAGAAAACGTCTGTGATTACAAGCGGTATTATTTTTCCTCTTCTTTGCGAATTTCCTCTTTTTCTTCTTCCAAGATCTCAGCAGCCTCTTCATTCAAAGCTTTAGCATCACAATGCGGTTTGATGAAAGGTTTTGGTGTCCAATATTTTTTTACAATTTCGCTGGAAAAGCCGTGAAGAACCTCCTCATTTAAGCGTTCTTGGTCGAGCGATCTCACTTCGGCAATCACTTCATCCGCTTCTACTTGATTAATGCCGAGTTTCATTAAGGTTGCTCGGCTTAAAGTCAAGGCAGATTCAAACGTTTCACGCACAATAAAGTCTACATCCTGTTTGATCAAACTTACCGTCGTTTGGCGGTCGTATGTTCGGGTTAAAATTGGCAATTCTGGGTAAGCCTCTTTTAATTGACTTACAATTGCTTCAATGCGGTCAGTATCATTAATCCCAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTAAGACACTGCCCTGTTCCAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //