Array 1 1392611-1393439 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014342.1 Geobacillus subterraneus strain KCTC3922(T) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1392611 30 100.0 36 .............................. CAATGACGAGCCGCCAACCACCCATCATTAGTCGCG 1392677 30 100.0 35 .............................. TAGAATTCCTCCAAGCAAATGTAATCGTGCGCTTT 1392742 30 100.0 38 .............................. ATGGATGAGGAAAGTTTGCAGCTGTCCCTTTTTGAAGA 1392810 30 100.0 35 .............................. ACGGACATATTGACAGGGGTTCAAACGATTGCGGA 1392875 30 100.0 38 .............................. TTTTACCAAGATACAACACATGAAAAAGGCATCCATTT 1392943 30 100.0 37 .............................. ATCTCATATCTTCTTAAAGCTTTGCGAAACTCTTGAA 1393010 30 100.0 35 .............................. TAGTTATGTTGAATCCCGATCATAGTGTCGATGAA 1393075 30 100.0 38 .............................. TAGCGAAGAAAACACCGAAGCACAAAAAGCCGGACACG 1393143 30 100.0 40 .............................. TTCGCGCCTGGCGACATCGTTTTGATTTACGACCCGTACG 1393213 30 100.0 36 .............................. ATTCCCCCTTAATGAAATTGGCTTGCCAAAAACACC 1393279 30 100.0 36 .............................. CAAGAAACCAAAGCACTCGCCCCGAAACGAACGGGC 1393345 30 100.0 35 .............................. TACTCACTCGTACCGTTCCAATCGGACTGTTTCGG 1393410 30 83.3 0 .C.........C..C..C..T......... | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 98.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : AATCCGGCGCTGTCCGACGACATCATCCGCGTCGCCCGCTCGCCGATCCGCAAACTTGGACCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCCTTATTCGGCAACGCCCCGCAAGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGATGCCCGCGATGCGGAAGCCGCTGCCCTTCAACAAACAATCGCCCAGCACGGGATCGAAGGCGCGCTTCGGCAATATGCAGGCCTTGAGAGTGGGCACCCGCTTGTGGCGGCGGTGAAGGACGAGTACGGAAGAATGAAGAAAAACAAAAACTGACCGTCTTGCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGGG # Right flank : CACTGTGTAGTACGGCACAACTTTTTCTGTCCCCCATGCAGGATTTTCACCCCCTGTTTGCGAATGGATAGAATCGAACACGTTCAAAGAGGGGTGATCGAATGGCCATTGACCATGACCGATTGTTCAAAGAGCTGATTCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTCCCCGACATCCACGAGCATATCGATTTCCGCCATTTGTCCTTTTTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGCGAAAAATACCGCGTCGATCTATTGGTCGAGACGAAGCTGAAAGGGGAAGACGGGCTGATCATTGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCTATGAGGCCCTTCGCGAGGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1401634-1402472 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014342.1 Geobacillus subterraneus strain KCTC3922(T) chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1401634 30 100.0 35 .............................. TCTCCTTTTAGTGAAACATTGTGGCCGCTATATTG 1401699 30 100.0 41 .............................. AAATTTTCCAATACTTTTAATGTACGGTTCAATTTTATCCA 1401770 30 100.0 38 .............................. TGGAAGAACACAAAGAGAGAACACAAGAGCAACCGATC 1401838 30 100.0 36 .............................. AAAAACGAAGTGAAACGGTTGACCGAACTGACAAAA 1401904 30 100.0 35 .............................. GAAGACGCATATCGCTACTTGGCTAGAGTGCTTCC 1401969 30 100.0 36 .............................. ACCCGTGACCGCGTCGATCACAACGCCTCGCGGCGC 1402035 30 100.0 39 .............................. TTGACAACGACGATCATGTGATCGAATTTTACACACGGA 1402104 30 100.0 39 .............................. CACTGGACGTAAATTCGGTTCGAGAGTGATTACAGTAGA 1402173 30 100.0 39 .............................. AGTTCGTTTTTTCAAGACACGATGATATGCTGTGTCCTC 1402242 30 100.0 36 .............................. TAGCCGGCGCCGGGATAGCCTTTCTTCCTCGCCTCC 1402308 30 100.0 36 .............................. TCCCGATGGTCGTTATGGAATACGAGAACTTGCGTG 1402374 30 100.0 39 .............................. AAAATCGTGTACCGATGGAACCCGTCAACGATGATGAAC 1402443 30 90.0 0 ..............C......A.C...... | ========== ====== ====== ====== ============================== ========================================= ================== 13 30 99.2 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGGGAGCGCAAATCGCCTACGCTCGGTTTACTGCCTTGCCGCCGCTTGTGTATGTGAGTGTGTTCGGGCGCTTGATATTGTCGCCGCTGTTGGCTGGGTCTTTGATCTTTCTATTAGGAATGGATGGCGTGACGGCTCAGGCATTGCTCATTGCCAGTTCGTATCCATGTTCACGCAATACGGCGCTGTATGCGCTCGAGTATGACTGCCACCCCGATTACGCCGCCCAGGCAGTGCTGGTGTCGACCTTGTTGAGCGCCATTACCGTGACAGGCACAGTATATGCGGCCCGTCTGCTGTTTCCGATTGGCGGATGAAAACGGGGGCAAGTTGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAACTCCTACAGCCAACGCGGCTAGACCGTATTGACAGAATTTTTGAAACGTGCTATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGCATGGTTTTGG # Right flank : CTGTCTCCTGCCACAGCTGAACCACCGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGGAAAAGGACAAATGCGAAATGGCACATGCCAAAAAAACGCGGGGGGAAACAAGAAGGAATTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCAGGGAGGGAAAACGTGGCGAAGAAGCGAATTGACCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTTCTTTTCTTTCCCGACGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAAACAAAGGTGAAAGGGGAAGACGGGCTCGTCATTGTCCATGTCGAGCATCAAAGCTACACCCAGCGGACCTTCCCCGAGCGAATGTTCCTCTACTTCAGCCGCTTGTTTCAAAAATACCGCCGCCGCATTCTCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2889564-2888741 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014342.1 Geobacillus subterraneus strain KCTC3922(T) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2889563 30 100.0 38 .............................. TATGCTTGCGTTGTATTACCGACTTTTGGAGCATACAC 2889495 30 100.0 36 .............................. AAACAGGCGTGCAGCAGTTCATGAACGAATGTTTGC 2889429 30 100.0 36 .............................. GACTTTATTTGCTTTACATTTTCATCGTACTATGAA 2889363 30 100.0 35 .............................. ACACCTAAATTCGGGATACCAATTGGATGAGAAGC 2889298 30 100.0 37 .............................. TCCTTCTGCCGCTTCAAATACCCTTTCACCTTCTCAA 2889231 30 100.0 36 .............................. AACGTCCCGATCATCGTCCTGGCGCAGCTCAACCGG 2889165 30 100.0 35 .............................. GAACATCTTTTCAGAGCATAAGAAAACGCCTGTCG 2889100 30 100.0 35 .............................. TCGAACTCTACTGCCTCCCGCCACTCGCTAGGAAA 2889035 30 100.0 35 .............................. ATGATACGGACATGCACATCATAGTTCGGCGCATT 2888970 30 100.0 34 .............................. TACCACAGCGATAATCTCAAGGGAACTATGATCG 2888906 30 96.7 38 ........T..................... TGATGATCAGAAACTCGAGTCGTTGCAGTCGGTTTTTG 2888838 30 90.0 38 ................C..C.....A.... ATAACTCAAACCCCAAGCTGCCTTCTTTGGCTTTGGCT 2888770 30 83.3 0 .................A.C.A..GA.... | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 97.7 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TATGAAACGATCGATGGCAAAAAGAAAACGCATTTTTTCGGGCCGGACGACGACGTCTTTCCCCACCTCGTGGAGCTGAATTTCCGCCATAAATACGAAGCGTACTATGGCGTCGAGCCAGCAGAGAGATTGGTGATCCAGCCTGTCCATGTCCACCACCGTCATCGAGTGGTAACACGATTCAAAGATATGTATATTACGGGCTGGTTAGGCCATTATCGTCTTTCCTCTTCTCCCGAACAACTGACGTTTCTATACCACGTTGGCCTAGGCAGCCGCAATTCCCAAGGATTCGGCATGTTTCGGTTAATCAGCGAGTGAGCCATTCTGATTGTCGTCGACCTCCAATCGTGCAAAAACCCTAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCATGGTTGAACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATGATGACGTTGAAGGGAAAAGGTTGATATGACAACACTTTTTGGG # Right flank : CGACACCTACGTTTGCTCATCCAACCGGTTTCTTTGTAAACATTTGTGATGAAAAGAACGGAACTCCCTTTTTTGTGCATCACGGTTTTATAAATTTTTGGTTTTTCTATTTTAAGGTTAGAGAGCTAACCACCGCGACAGGAGGCTTCACATCGATGCGCCAAAAACTTCGCGATCTCGGGTTTTCGATCGGCACGCTTCCGACAGGGAAGCGGAATCAAATTACGGATGTGTCCGGCGTTCGGGTCGGGCATGTGACGATTCGTGAAGAGCGGGATGAACGGACGGTGGTCCGCACTGGGGTGACGGCGGTGTTGCCGCATGGGGGGAATTGGTTTTTAGAGAAGGTGCCGGCGGCGTGCTTTGTCCTGAACGGGTTCGGGAAAACCGCGGGACTTGTGCAAGTCGAGGAGCTGGGGACGATCGAGTCGCCGATTATGCTGACCAATACGTTCAGTGTCGGCGCTGTCTGGCAAGGGACGCTTGAGTATATGCTTGCG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 2904685-2903794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014342.1 Geobacillus subterraneus strain KCTC3922(T) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2904684 30 100.0 38 .............................. GCCACGTTTCTGCATTGAGCAATTCAATGAGTTTGTCG 2904616 30 100.0 37 .............................. CGTACATTTGATACCGAATATGTAGACGTTGACATTG 2904549 30 100.0 36 .............................. ACCTCATCATGTTCAGTTATATAAACATATCCGTTC 2904483 30 100.0 36 .............................. ACCTACATGTTTGACGCTCAAATACAAAGATACTAC 2904417 30 100.0 36 .............................. CTTCACCGAATACAAACGCTTCATCGTCGCGCAATT 2904351 30 100.0 36 .............................. CCGTATGGATTGACAGCTATGGCGGCAGTGTATTCG 2904285 30 100.0 35 .............................. CTTCACCGAATACAAACGCTTCATCGTCGCGCAAT 2904220 30 100.0 35 .............................. CCTTTATCCTCCGTCCGAGACGGTCGGGCGGAGTG 2904155 30 100.0 35 .............................. AACATCTATATCAACAGTGGCGGCGGATCCGTCTT 2904090 30 100.0 37 .............................. ATTGCCTCTTTCACTAAAGCAGGTGATAGGGTTTGGC 2904023 30 100.0 38 .............................. AAGAACCTTGCTTCGTTCGCCAGCTCCCCAAGCTCCAC 2903955 30 100.0 36 .............................. GCCTCGTCCGCAAAACAACGCTCACCGCAACACCTC 2903889 30 100.0 36 .............................. GCAGCCCAGCTTGCGGCACTCCTAGTTGAGTGCGCA 2903823 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : ATGCGGCTTGAACAGCGGAAAAAAGAGCAGGCATTGCTGGAACAGCGGAAGCGCGAGGAAGAAGAGCAAGCAAAACTTGCCCTGCTTTCCCCAGAAGAACGGCTTGTCGCTGAAATCGAGCAGCTCACCGACAGCCAAGCCGATCAGCAGCGCAGCAAAGACATCCTATATAGTCAAGTCATCCAACAACAAAACAAACAGGCCGCTCAAGCGCTGCTTGCGTATTGGCAACGGATCGGCCAATGGGAAAAAAGCGCCAGCAAAAAGCAAAAAGAAAAAATCAACGTCATTCAACAGCTGCTTAACGGCTCATAACCAAACCGCCTTTCGTTTGTCGTCGACCTCCAATCACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGATAGACTTGATTGACAGAATCTTCGAAACGTGTTATTCTGATGATGACGTTGAAGGGAAAAGGTTGATATGACAACACTTTTTGGG # Right flank : TTCGGCAGATGATCAAAGAAGGCCTGGAATCCGGGATTAGATTCGGCACAGCGAACCGGGAAATCTGCTTGTGTCTACTATATACATGCAACATAAAGAGTTAACTTCTCATCCTGCACACCCTAAGCGTTGCAGCACTTCCTCCGGACGTTCGTGGATGTAGTGGACAAACCGAGCAATGGCCTGGACGATATCGTTTCGATTTTTGTGAAACACATTGGCGATCACGGTGTCTTTCAGCCATTTCCACAAGCGTTCGATCGGGTTCAGTTGCGGAGAATACGGAGGAAGGTAAATAAAGTGAAAACACTGTCCTTCTTCCCGCAAAAACTCCTTGACCATTTTGGCATGGTGAATGCGGGCGTTATCCAACACCAAAACCATGAGACGGTCTAAATAGCGCTGTTTGAGCATTCTCAAGAAATCCAAGAACGTCGCGGCATTGGCAGCGGTCGTTTGATGAAGCACCGTTTCGCCATCGTGGATGTTGACCGCGCCAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 2915901-2913997 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014342.1 Geobacillus subterraneus strain KCTC3922(T) chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2915900 30 100.0 39 .............................. CCGTATCCATTCGTTCTTTCACACACCGAGGAAACAGGC 2915831 30 100.0 36 .............................. TCCGGTGCCCAATGCGGTTTAGCAGGGTAGCTGTCC 2915765 30 100.0 37 .............................. AGTGTTGTCATAACCCCGCTACCGCAACAAGAACAAG 2915698 30 100.0 39 .............................. TTAGCGACAATTTGAATGTGTCGAGCAATTTCTTGATCA 2915629 30 100.0 35 .............................. TTAGATGTCGTGGAACATTTCCTGTTCGCGTTCAC 2915564 30 100.0 36 .............................. ACAGCTTGAAGATCGATAAAACAAAGTGGTATCGCA 2915498 30 100.0 40 .............................. TTCTTGCAGGTACGATTTCAACCGCTCTACTTTGGACTCA 2915428 30 100.0 39 .............................. TTAGCGACAATTTGAATGTGTCGAGCAATTTCTTGATCA 2915359 30 100.0 35 .............................. TTAGATGTCGTGGAACATTTCCTGTTCGCGTTCAC 2915294 30 100.0 41 .............................. TACAATGGAAAAACACGTCAAAAGTATCATGATAGTATCAT 2915223 30 100.0 35 .............................. ACGCTAGATGAACAAAAAAATGATTTTGACCTTAT 2915158 30 100.0 39 .............................. CGGTTCAATAACGAAGGAGGACGATATTTATGAGCATGA 2915089 30 100.0 34 .............................. CCTTTTGACTAATCCGAATACTACGCAGATCGGC 2915025 30 100.0 39 .............................. CCTCACGCGGGTCCATTCCGTCTCTCAATGTGAACACGA 2914956 30 100.0 36 .............................. CGAGTTTACAAGGACAGACCGAGCCACTACCCGATA 2914890 30 100.0 36 .............................. TTTTTGTTCTACATTTTTTAAAACGGGAGGTCATCA 2914824 30 100.0 35 .............................. ATTCCAGGTCTCATCCGTCACCTTTCAGAACAGAG 2914759 30 100.0 35 .............................. ATTCCAGGTCTCATCCGTCACCTTTCAGAACAGAG 2914694 30 100.0 35 .............................. TTTAGCCACCAAAACACGCTCTACTTTTTTATCGC 2914629 30 100.0 35 .............................. ACCTTGACACGTTCAGCAGTGTTCTCCCGTTCCCA 2914564 30 96.7 39 .............................T GCTTCTGAGCTGTCCTACGAGCGTCACTATATGTTTTCC 2914495 30 96.7 37 .............................T AAATAACCCGTCCGCCGGGTTGCAAACGGGTGGATAG 2914428 30 96.7 37 .............................T TTCGCGTTTCCTTTCGCTCCGGCAAACTTCTTCACAA 2914361 30 96.7 35 .............................T GAAACAAAATTAAGTGCTATCGATGAGCAATATCA 2914296 30 96.7 37 .............................T GCGTGGTTTTCTAGCGAGGGCAATCGGCTAACCCGCC 2914229 30 96.7 38 .............................T TCATTTCGCAGCCGCTTGGCGTCGTCCTGTCGCGATAC 2914161 30 96.7 39 .............................T CTGCGCGTACATAAGAAGCATTTCTGCGGTGGTTTTTGG 2914092 30 100.0 36 .............................. AGATCATCCAACACATCCGCCTCCGAGTCCAAAATG 2914026 30 86.7 0 ....................A..CC.G... | ========== ====== ====== ====== ============================== ========================================= ================== 29 30 98.7 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CACCCCATCGGTTCACTTGCCTGCGGAGCGGCTCGCCAAACTCGCCTCCGTAGCGTCAGCGCCGCTGCAGCCAGTGAAAGAAGCGATGGCGAAAACGGAAAAAGCGGGATACCAAGAGGCGATCATCGGCCGACTGCTTCGAGACATAAAAAGTTAGCACTCGCCCTTGTTCATGCAAGTGTTGGGATTCCAATGTTTGTATTCGTCTTGCCTGCGATGGATGGGCAGGCGGCGCCCCGGTTTTATTCACCGCATGACGAGCGCTTGCCCTCGCTTAGGCAAACAGCAATCGGCAAACAAGGCACGCCAAACGCTAGGAAGCAGTCTTCGTTTGTCGTCGACCTCCAATGACGCAAAAACCCCAGGGGGTCGACGACATTGGTTTTGATCGCCTGATCCCTACAGCCATCAAGGGTAGACTTGATTGACAGAATCTTCGAAACGTGTTATGCTGAAGTTGCCGTTGCAGGAGAAAGCTTGTTATGGCAGCGCTTTTTGGG # Right flank : GTCAGCGCACTATTTTTGCGGAAAGATCCTTATCCCTCCACTTTCTATCTGTTTTTCTTTCCCTATCTTCCTCGAAAAATTTTGACCCACAATCGCTAGTTCAGCCCATTTTTTATGCGAAGTTTTCCAGAAGGCTGGTGAAAAACAGCAGTTTCCCTTGATCAATGGGTGAACGTGTGCAAAGAAGGAACGATGCTACAGTTTTTTCTATTATTTGAGAAACGTTATTGAGAAGCGGCCTACTCCCTTAAATCACCAGCCTTCCAAAATGTCTTTCCGCAGTAGAGGATTCACCGATTTGTTATGAATTAAGAAAATAATAAAATCACTTGCTTGAATTTTGGAAAATAGTTTAAAATTGGTATAGAAATAGATATATTTTCCTGGTTTGTTCATGCTAGATGGAGATTTGAAGAATAGGAGAGAGATTGGCTTGTATCAGCACATTGTATTGACATGCGGCGTTTCGTTATTGACGGGGGCTAGGAATGTCTTTTCGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //