Array 1 26501-25015 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYU01000003.1 Haloferax sp. Atlit-19N P_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 26500 30 100.0 36 .............................. ACTCGCAGCCGAGACAATAGCCGCCAGAAACGCAGT 26434 30 100.0 34 .............................. ATCGGCCGACCATCGAGTTCGACCACTCCGTTGT 26370 30 100.0 35 .............................. TCACGACCGAGTTAATCGCTCTCACTCGTCTCACC 26305 30 100.0 38 .............................. AGTCGGCGTAAAGGCCATTTCACATCGTGGATTATGGC 26237 30 100.0 36 .............................. ACGATGAACTAATCCAGGTTCCGTTGATCATTGATT 26171 30 100.0 35 .............................. GGTCCAACGACCTTCTGATCTCCCGTTCGCGTATT 26106 30 100.0 34 .............................. ATCCGGTGACGAGACTTGACCGTCGCGAGAGACG 26042 30 100.0 36 .............................. ACCGACGACGATGACGAAACCGACTGTCCGCATCTC 25976 30 100.0 36 .............................. GCCGTGAGCGCGTTCGACCAGCAGGTGGTGAGTGTG 25910 30 100.0 35 .............................. GGCACGCAGTCCGGGGCGACGCCAACGTCAGGCGT 25845 30 100.0 36 .............................. TCGCTCGACGACTTCGTGACCGCGAGCGACACGAGC 25779 30 100.0 35 .............................. TCAATCGACAGGAGGCCAACGAGGTCGTCCGACTC 25714 30 100.0 35 .............................. GACGTTGTGCCCATCGGGAGACTGTCGCGTCGGCA 25649 30 100.0 36 .............................. GCTAGGCGAATTGAAGACCTCGGCGAGGTGCACCAA 25583 30 100.0 36 .............................. GACGTGACTGACGCCTCCGGCGCCTCAACGATCACG 25517 30 100.0 37 .............................. GGCGAGGGTGGCGGTGGCGACGCGACCGACGCGCTCG 25450 30 100.0 36 .............................. TACAATCTGACTGATGTCGACCAGACTCAAGAGCGC 25384 30 100.0 37 .............................. CTCGGGAACCCGAAGTGGCGCGCGCAGGCCCGCCACG 25317 30 100.0 35 .............................. TTCGCCGAACGCCGCAGGATGAACCGCCGACGGCG 25252 30 100.0 35 .............................. ATCGGGTGCCTACTTAACCATTGTGTAAATGTAAA 25187 30 100.0 46 .............................. GCGGCCGACGCGTGGCTTCGGGTGCGCGTGACGACCCCCACATCGT 25111 30 100.0 37 .............................. TGGCCGGGGTCGCGAGCGTGGCCGGCGTCACCGATGA 25044 30 73.3 0 .............T.C....A...CAC.CT | ========== ====== ====== ====== ============================== ============================================== ================== 23 30 98.8 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : CTCTCGACCAGACGGTGGAACATCCACGCCTGAAACGAAAAGTGAGCTTCAAGACGCTCATTCAGACGGACGTCTACAGTTTGAAAAAGCATCTCTTGACTGGAGAACCGTACCACGCGACGGAGAAGTGGTGGTGAAATGCACGTCATCGTTGTCTACGACGTTCCTGCGAAGCGAACTCGGATTTACCGGAAATTACTCCGACGGCGTCTAGAGCATCTCCAATTTTCAGTCTTTTTTGGCGAACTTACAGACGGCCAGGTCACCGCGATGAAAAATGAGATTGAGTCTGAACTGGAACCAGAAGATTCGGTAGTTGTCTTCGAATTCAACAATCCACATGCTTTCGAACACACGACATATGGCGATGCGGATGAGCCAGGTAGTCGGTTTACTTGATTTCCGTCGACCCCCCGGGGGGTTCGGGTGAATTGGGGGTCGACGGAAACACTCTTCTGAATTCAGGCGATACACGCTACTGTGCCCGTAAATTCGGACGG # Right flank : CGGTTGACGAACTAGAACTATCTCTTAGAGGACGGAGACCGGTAAAGCGTATTTTCTATGTAGTCGATGCGTCCTCAGACCCATCACCAAACGAACAGTATCCTTTGAAAACCTATATTTCCAACCTAGTAGATATATGTTCACGCGTCTCGTAGAGCCGAGTATGCCCGACGAAGATCAGAACGACTCCCGCAATTCGATGACCCGTGGTGAGCGAATCCGCGCCGCCGCCCGGACGCTTCGAACGCCTCGGACTGCGTCGTGGGTCGCGAACGAGACGGAGACCTCCGTCAAAACGGCACAGAAGTACCTCGACCAACTCGTCGAGGACAACGTCCTCCGGAAGATCGAACAGGGGGAGCAGACACTCTACTGCGTTGACCAGCTGATGGCGACCTACCGAGAGGTCGCAGCACTCCAGCGAGAACACAGCCGCGAGGAGTTGACAGATGCTCTCGATTCGATGCGGAGCAAGATTACGGACTGGAAGCAGTCATACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 40947-36502 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYU01000003.1 Haloferax sp. Atlit-19N P_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================================================================================== ================== 40946 30 100.0 36 .............................. TACCTGCAGGTCGACGATTCGGACGGTATCTCGACG 40880 30 100.0 35 .............................. CTTTATAACAAAACACGACGTAGGGGAGAGTGAGG 40815 30 100.0 33 .............................. TTAGCTTCGTATAGAGTCGGCGTAAAGGCCAGT 40752 30 100.0 34 .............................. GTGTTTAGCCGGTTGATGTCATCCGAATCAAGAC 40688 30 100.0 36 .............................. GACGACTTCAGCTAACAACCATGTTTTCCACACACG 40622 30 100.0 36 .............................. AGGCCAGTCTCGACGCCGACGGCTACGACTACAACA 40556 30 100.0 37 .............................. AGTTGGTAAGCAGCGTCTAGAACGTCGCCGGCCATGA 40489 30 100.0 33 .............................. GCGCCCGGCGATTGTAGAAAAAATATCCGAGTG 40426 30 100.0 38 .............................. CACCACCGCTGTCGGACGGTCGTTGCTGGGATTCTGCG 40358 30 100.0 35 .............................. GTGCAAAGCACGGCCTGGATAAACTCGAAGTCAAA 40293 30 100.0 34 .............................. ATCCCACGCTAGCGGCCCTGAGAACGTCGATGTA 40229 30 100.0 35 .............................. AGCTTCGAGGAAGACACTCCGAGCATCACCGTCCG 40164 30 100.0 36 .............................. CAGCAGTTCCCCACCGTGGTTCTCGTAGTAGTGGCG 40098 30 100.0 37 .............................. GTGAATTCTGATCTCTCAACGACCGACATAGCCAATC 40031 30 100.0 34 .............................. ACGAACGTCAGGAAGACTCCGAGTACCATGATCA 39967 30 100.0 36 .............................. GATAGGGCGAGCGGGTTGGTGTCGTCCATCCGGAAC 39901 30 100.0 35 .............................. GCTCATTTTCTCCCTCCATCGACGTACTTCACACG 39836 30 100.0 36 .............................. CGACAACGGGACGCTCCTCGACGACGACACCGACTT 39770 30 100.0 35 .............................. GGCCTGCCCGACATCATCCCGGCGACGCAGACGCT 39705 30 100.0 36 .............................. GGACTGATTGGCCGGGCAGGAGACGAGTGCAATATC 39639 30 100.0 35 .............................. AAGCAAATCCGCCGGGATAGGGCCAAAGCAATCCA 39574 30 100.0 36 .............................. GTCTTTGGAGTTTGCATCGTTTGTGATGACTGGCTC 39508 30 100.0 36 .............................. GTCTTTGGAGTTTGCATCGTTTGTGATGACTGGCTC 39442 30 100.0 36 .............................. GACGGTCATATTGGGACGGTCATGCAGTTCAACCGG 39376 30 100.0 37 .............................. TGATGGCCGATTCCGAGGTGTCGGTTCTGAAAGTCCA 39309 30 100.0 35 .............................. ACGTCGCCGCCGTGGCGGAGGTCGTCGACGATGTC 39244 30 100.0 38 .............................. ACGCTCACCGGACTGCTCGATGGAACCAGATATGACCT 39176 30 100.0 37 .............................. GACGACCGAGACGGATTCCGCGTATGGCTCTCCCGGG 39109 30 100.0 36 .............................. GTAATCGTAGTGTGCGGTCGGGGGGGAATCTCACCC 39043 30 100.0 37 .............................. GTGAGCGCCCCCGCCGTGTAGCGCTCGCGGAGCTGCT 38976 30 100.0 36 .............................. AATTCGTTTGTCTCGCACTCGCGGTTATCTCACTCG 38910 30 100.0 33 .............................. TCCCGGATTCAGTGATGGTCTCGACACTCCCGC 38847 30 100.0 36 .............................. TGCCTCAGAATGCGTTCAGACACGTATCTCGAATTA 38781 30 100.0 35 .............................. GACGACGGGGAACGCTCCTCTGGTTTCGAGACTGA 38716 30 100.0 50 .............................. GTCGACGCGGGGAGCAACAGCACGAACACCGGCTCCGGAACGACTCACTC 38636 30 100.0 34 .............................. CAGAGCTACCGCGTCCTCGTCGAAGGGAACGCCT 38572 30 100.0 39 .............................. GACAACTCGATCCGGGACCACACAGGCGTCTGTGCGGTC 38503 30 100.0 37 .............................. GACGTCAAGATCGTCCTCAAGCTCACGGGTGACGAGG 38436 30 100.0 36 .............................. GTCCGATTCCTGATTAGGGAACACCTGCAAATCGCA 38370 30 100.0 35 .............................. GACCTCCGGCCACCAAGTCCGGCGATTGGATGGAC 38305 30 100.0 36 .............................. TACGGACAGGCCGCCATCATGCTCGCCTCTATCGGC 38239 30 100.0 37 .............................. CGGGCTTGGCGCGACTTTGTCCACGGCTCAAAGTCCG 38172 30 100.0 34 .............................. TGATTGAAGTCTGCTCGGTAGGTGTAGGCCGACA 38108 30 100.0 35 .............................. CCCCAAAAGATGTTCGAGGGGCCGTCCTCGGACGC 38043 30 100.0 32 .............................. GAGTGTGACAAGTGTAGCGCGCACTTTGATGC 37981 30 100.0 36 .............................. ATCCAGTTAGATGTTGACCCCATAACAGACCCGACA 37915 30 100.0 36 .............................. CACGAGAGCCACGCGGCTATCCAAGGCCGCGACACG 37849 30 100.0 36 .............................. ATAAAGAAACGCTGTTCGCGAGCTTCGTCGACGAGC 37783 30 100.0 38 .............................. CTCCAATCTCTCGCCGTTTTTCTCGAAGAACGCATCCA 37715 30 100.0 35 .............................. GTGGTCCGGCACGACCCGGGCGACATGGCGGCACT 37650 30 100.0 37 .............................. TGGGTCGGCGTCGACATCAACACCGACCACAGCGATG 37583 30 100.0 34 .............................. GAGTTCCCTGCGAAGCCAGAGGCGGACCTGTTTC 37519 30 100.0 36 .............................. GCCGGACTCCGTCTTGGAGAAGCTCTGGACCCCAAT 37453 30 100.0 36 .............................. AAATACCACTTGACCGACTAACACAAGGATTTACAA 37387 30 100.0 34 .............................. ACGCTCGCCATCATCGAGGAGGCCGACAAGGACG 37323 30 100.0 34 .............................. ATGGACGATATCGCACCCATCGAATACCTAACCG 37259 30 100.0 36 .............................. GACGCGATAGACACGGAGGAACGGCGATGATGGCGT 37193 30 100.0 37 .............................. GCCGAAGGAAAGCGCGGCGTCGACCGGGGTCAACTGA 37126 30 100.0 34 .............................. ATGGACGTGTACGGCCCGCTGGAGTACAGAGAGA 37062 30 100.0 35 .............................. CCGTTTTTGTGGTGTTCCACAACACTCGCGTATTC 36997 30 100.0 35 .............................. TCGTTTTCCGGCGGGTTTTCGACCACCGGCGCTGG 36932 30 100.0 35 .............................. TAACCTTGCTTGTGACAGTAGCCGGCAGCCGTGTT 36867 30 100.0 36 .............................. ACACTCACAGCCGTAGTGAAGGGTTCACATAGCTCC 36801 30 100.0 37 .............................. GTGCCTTCGACGAGCAGCTCGAACTCGCGGTCCGAAA 36734 30 93.3 36 ..............T...C........... AGTCCCTCGAAAGCCAGATAATCCGGCATCGTCACT 36668 30 86.7 107 ..............T...CA.........A GTTGATTCGGTCGGTGACACAACTACACACCTCTCGAAACTGCCGAAATTGTAAAGGCAGATTCGGGTATTCGTGATACTGACGTACGGGTTCCCTTCGCCGAAGTG 36531 30 76.7 0 A.............GAGA.C.........G | ========== ====== ====== ====== ============================== =========================================================================================================== ================== 67 30 99.4 37 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : ACGGATGGTGAAACGATATGCGACAGACCGCGGAGTGGATGACGCCCTCTGATGACCGAATTCTTGAGTTGCTTCGAGAGTACGGTAATCTCACTCCTCGTGCTGTCGAAGACTTCGGTGGTCCATCGATGGGCCACGCACAAGACCGTCTTCCGCTGCTGACCAAGTATGGCCTGGTCACGCGGCTTTCGCGCGGTCTCTACGCGATTTCTGATGACGGACTCGCGTACTTGGACGAGGAGCTGGACGCCTCGACGCTGGAGTCTGTCGACGACGAGTAGCTGTGTTTGTTGTGCCTGGCTGTTCGTGACCACGGCACGCTAGCCGAGGGTGGGTAGTTAGAAAGGGGTGATTGGGTGGTGTCCGGATTGGCCGGACCACGTTGTCCGATTTTTTTAGCTTCCGTCGACCCCCCGGGGGTTTCGGGTGAATTGGGGGTCGACGGAAACACTCTTCTGAATTCAGGCTGTAGGGCGTGTCGTACCCGTGAATTCGGACGG # Right flank : AAGTACTGGCAAAGGAGCCCGAACACATAGTTCAGACGAATCGCTCGGTAACAGACGTCTGTCAGAGTAGTTGAGAACCAGCCCTTAGCGACAGTAGCCCACAGAAAATGATCCTGAAGGCACATTTAATTCTTGTATCTAAATTGTGATATTTTAGAGTAACTACAAGTAATGGCAAATTAGAAATGTTTCTTGTGGTACAGAATGTCACAGCGCCACGAGAGGTGGTATGAGGCGTGCGTATCGAATTAGCGCTCGATGCCGTTGCTGATGCGGCCTATGATACGTCTTACTTCCATAAGGCACGCGGGCGTATCTGGCGCGGCCTCGAGGACGACACGGAGTTCACGGACGTTCACGATTCGAACCACGGCGCTGGGTTCGCGTACTCGAACGTTTTCCCGTGGGGACAAATCGAAACTGGTGACCGTCGGTACTTCCGTATCGCGTCGCCACGACGTGAGCTTCTGGACACGCTTATCGCCCACTTTGGACGCGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 361409-360420 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYU01000003.1 Haloferax sp. Atlit-19N P_contig000003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 361408 37 100.0 32 ..................................... CATTCCTTGCACGCGGGCACGCAGTCATCGTT 361339 37 100.0 39 ..................................... TCTGCCGCGACGACTTCGTAGTCGGTCGTGCCGTTGGGT 361263 37 100.0 36 ..................................... TGGGACACCCACGGTCGCGACAAACTCGAGAACGCC 361190 37 100.0 37 ..................................... TCCAACAGTGGCCGTAGACGTGCGACGGGGCGGTCTG 361116 37 100.0 37 ..................................... TTTGCCAAGCCTGCCGAGCGCGAGGCACGCCGCGTGT 361042 37 100.0 37 ..................................... TGAGACGCCGCAGATTGTTCCCGGGAGCGAGGTCTGA 360968 37 100.0 35 ..................................... ATCTCGCCCACCTTGTCCTCCATCGTGACCGCGCC 360896 37 100.0 35 ..................................... CATGAGTTGTTCGTCGTCAGGCCAGGCGTCGATGT 360824 37 100.0 36 ..................................... CAACGGAACAGAAGACGAGACAGAGACGGCAACGTC 360751 37 100.0 36 ..................................... CTATCGCAGAGGTCGGACAACGGACTCGGAGGTGGC 360678 37 100.0 38 ..................................... GACCATGAGTGACGAGCGAAAGCAAGTGGCGTTTGAGG 360603 37 100.0 38 ..................................... AACATGATGTGCACAAAGAGGTAGACAAATCGTCAGAC 360528 37 100.0 35 ..................................... GATGGTCTTCGGGTTGCGGTCGATGATGGGTTGGT 360456 37 91.9 0 ..........G............TT............ | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 99.4 36 GTCGCAGTAGCGAGAAAACCTAGACCGGGATTGAAAC # Left flank : CCATGCAGCAGAGGGTGAGTTAGTCGTCAATCTGAGTGGCGGTGCACGTGATGTGTTTCTTCCGTTTGCAACGGCTGTACTGTCGGAATCTGATCGTGTGAGTCGGACACTCTGTTTTAGTGATATTGACGGGCGTGTTCGCGAATTGAGCCTTCCCAATCTGTCTGTGGAACTGTCGGAGTCCGTTGCGAAGACGCTCGCCGCTATCGAACAGCTCGGTGGTAAAACCTCCATCCCAGAACTTACTGAGACCGGCGAACAAGCCAAGAGCACAGTTACTCGACACGTTACTGAGTTAGAATCACATGGCGCTGTCGTGTCCGAAAAACAGGGGAAAATCAAGTACGTCTCGATGACGTTGACCGGGGAATTGTTGCTCGGGCGGCGCTGATTTCATGGACCATTATTAATACGCTGTACAGCCCCAGTCCATGATCCGACATCGGCTTTTGGACTTGCCACAAAGCATTATAGGCCCTGAGCCGTGATTTTCACCCCCT # Right flank : ACGCCCGCTCCCGACCGCGACCAGCGACCGCTCACGGTGGTCTGCCGAACGGTGACGGACAACGTCGGCATTCGATTAGAGTACGAAGGCGCGTTCGACTGGGTCGCGTTCGTCCCGAAGCGCGACTCCGCGGCGGGCGCGCTGACGAAGTACTTCGGCAAGTACGCGGACCCGACAGCCGATGGGTCGACGTACAAATACCGCGGCATCGAGTGTCGCCAGCGGAGCACACCAGCCTTCGTAGCGTCCGTCCAGAAGGAGCTCATTCGGACGTTCGACCAGTACCGCGACCCCGGCCCAGTCATCGACAACCTGGCCGCACATCTCGAAGCGCTGCACGCGGGTCGCGTCGACGCCGCAGACCTCGTGGCCAGCACGCGAACGTCGAAACCACTCTCCGAGTACGACCAGGCGACCCAGACGGTTGCGGCGCTGCAGCGAGCCGATAGCCTGTACGACGACGACCCGCCTGCTGGCGGGACGGTTGCGTACGTCGTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTAGCGAGAAAACCTAGACCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 4 371678-375336 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYU01000003.1 Haloferax sp. Atlit-19N P_contig000003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 371678 37 100.0 36 ..................................... TTTGAAACTACCACTGTCGTCGAACGCTCTTGCTTC 371751 37 100.0 34 ..................................... TGATCGACGTCTCCAACATCTTCTCGACCGCGGG 371822 37 100.0 37 ..................................... AGTGCTTCGGAGCCAGCCTTATCCACACCCATCGACT 371896 37 100.0 36 ..................................... GAGAACGACAGAGTCGTTCACACCTGCCATTCGTTT 371969 37 100.0 36 ..................................... AAAAGTCAGCATTAACCGAGTAATCCAACGCAGGCC 372042 37 100.0 35 ..................................... CTCGTCTCGTCGTCTGAGAACGGACGCCTCGGATT 372114 37 100.0 37 ..................................... ACGGCGCTGCTCCTCCTCGGACTCGGCGCGCTGATGC 372188 37 100.0 37 ..................................... TTTTTCTCGGAGTGCCCCTTCCGCACCGTCACGGCCG 372262 37 100.0 36 ..................................... TTCATCGTTGACGATGCCGACGGCGAGCGCGTCAAC 372335 37 100.0 35 ..................................... AGTTTCACGACCGCGAGACACATCGCTCCCGAGCA 372407 37 100.0 37 ..................................... ACCATGTGTGAGCCGAATCCAAACGAGTACGTCGTCG 372481 37 100.0 36 ..................................... TGGTCTTCGTGGCGGTTGACCGGCGCGGACTGTCCT 372554 37 100.0 35 ..................................... ACTATTCACGAACCAGTAACACGTATTCCCCTTCG 372626 37 100.0 35 ..................................... TCTGTGTTACCAGTTTGGTAACACCGTGGGAGTGG 372698 37 100.0 37 ..................................... ACCGGGCCTTCGAGAGACGCGTTGAAGCGGTCGACCT 372772 37 100.0 39 ..................................... GTCAAGAAGCGAAGCGGCGAGCGAGTTGTCTTCGTCGCG 372848 37 100.0 32 ..................................... TGTCGAGACCAGAGTCACCCATGGAACGTCAC 372917 37 100.0 36 ..................................... AACGCGGTCGTGTCGCCCGAACCCTTCAGTTCGGCC 372990 37 100.0 35 ..................................... AACGCGGTCGTGTCGCCCGAACCCTTCAGTTCGGC 373062 37 100.0 36 ..................................... TCCCATTCCCCTACCAGCGCCTCCGCCGCGGTCGCG 373135 37 100.0 35 ..................................... ACATGTACGTCAGCAGCATCACTCAGGGACTCAAC 373207 37 100.0 32 ..................................... GTAACTATGAACCGTCGGAGTTCGTCGCGGCC 373276 37 100.0 35 ..................................... AGCTAAGTTGACAGATGCAACTGAGCACAGCGATA 373348 37 100.0 35 ..................................... ACGCCTACTTTCGAGATATCCGGGGCGCTCGCCTT 373420 37 100.0 33 ..................................... GCTCGCCCCGGTGGGTCATCGCCGGAATCAGAT 373490 37 100.0 36 ..................................... TGGGACACCCACGGTCGCGACAAGCTCGAGAACGCC 373563 37 100.0 35 ..................................... CTTGTCGGTCGCGGTGGGACGGACCTCAAAGCGCG 373635 37 100.0 38 ..................................... AAGGTAACCGTCGCATTCCCCGTCTCGGTTTTTTGAAT 373710 37 97.3 36 ..........C.......................... ACATCTCCCAGTACCGCGTCCATTCCCTCATGAATC 373783 37 97.3 37 ..........C.......................... TGCCACCGAATCAGCTCGACTGGTTGGAGTCAGAACT 373857 37 97.3 36 ..........C.......................... CGCGTTGCAACATCGGCTGCAATCGGGGGCGGCATT 373930 37 97.3 35 ..........C.......................... GATACATGGGAAAGACAAGTATCGAAGTATATGAG 374002 37 97.3 35 ..........C.......................... ACTGCAGATCTCCTCGTTGACGCAATTGACCAGTT 374074 37 97.3 34 ..........C.......................... GAAGACCGACGGCGGCCCGACCCACACGAGCCAC 374145 37 97.3 37 ..........C.......................... ACCTCGGGAGCAGCTACGATGTCCGGAAGTTGGCATC 374219 37 97.3 36 ..........C.......................... ACGTTCATCCCGTCGCACTCGTTCAGCCAGAAGCTG 374292 37 97.3 34 ..........C.......................... TGGCTATCATCTGCGTCGGGGTCTAACGGCGGGT 374363 37 97.3 33 ..........C.......................... TGGAGTTCGGTGCCATCCGGCCCCATAACGACG 374433 37 97.3 35 ..........C.......................... GAATCTACAGGCGGCGAACGAGCAACGGGGTTGGA 374505 37 97.3 36 ..........C.......................... AGAACGTCGACGTCTCGGTACTTCTTGAGTTCGGAC 374578 37 97.3 36 ..........C.......................... CACATCTTCGACAGAGGGCCGACGCTTCAGCCTGTG 374651 37 97.3 36 ..........C.......................... ATGTCGTCGGCGTCCGGGACGTTCTGTTCCATGACA 374724 37 97.3 32 ..........C.......................... TCTCCTGGTCGCGACGATTGTCATCCCAGGCA 374793 37 97.3 33 ..........C.......................... GGAGCAAGAGGTCGTCACTCATCGAAGGAAACC 374863 37 97.3 34 ..........C.......................... GCCAAGGCGTCGCGTCAGCTGTCGCGGCTCGACA 374934 37 97.3 38 ..........C.......................... TGGCCGCCGTCATGGGGGGTGCGTTGGAGTGACAGATG 375009 37 97.3 36 ..........C.......................... GATCCCGATGTCGTTCGATGTGCAGTAGTCGATAAA 375082 37 97.3 36 ..........C.......................... GAAGCTCCGGACCCACGACATCGCGCACGTCGCGAA 375155 37 97.3 35 ..........C.......................... AACAAGTCAAACGGAGCTGGCGGCGAGAATATTCA 375227 37 97.3 36 ..........C.......................... ATGCCGACGACGAGGAGCGCGGTCGTCCAGCCGACC 375300 37 73.0 0 ...A...C..CA..........C.T.A.....C.GC. | ========== ====== ====== ====== ===================================== ======================================= ================== 51 37 98.3 35 GTCGCAGTAGGGAGAAAACCTAGACCGGGATTGAAAC # Left flank : ATTTCGACTACCGAGTGACGCGACGGGAAGCAATCCGACAGCAAACGATTCTGCTTCGAAAAGCGATCACCGGTGAGTTAGACAACTACCACGCGCTGGAGTTCGATCACTAATGCATCTCGCAGTCACGTACGACATTAGTGATGATGGCCGTCGTCGGCAGGTGTATCAGACGCTCGAACGGTACGGAGCGTGGCGACAGTACAGCGTGTTTGAACTCAAGGTCACGAAATCGCAGCGTGTTGAGTTAGAATCTGCGTTGAAAGAGCAGATCACGCCAGCGAAGGGAGACCGGATACGAATCTACCGGCTCTGTGCTGCGTGTCACGATGATATCACAGACCTCGGCGTCAGTCCACCAGATGAACAATCAAACGTGATCTGAGCTAGTTTTCATGGACCTTTATTAATACGCTGTACAGCCCCCGTCCATGAACGGGGGCGGTGATTTCGTGGGCAGAGAAAGCACTATACTGCCTCAGGACTGAATTTCACCCCCT # Right flank : CGCGAAATCGTCACCGAACGCGGTGCGGTTGTGTTGCAATCGCACCGAGTATCGACACCGTCACCGACCGAATCCGATTGAGCCGTTCGAGCACCGACGCGGCGTCCTCACCCGCCCACGCAGCGAGGTAGAACGCTGAGTTACTGACATCCAACCCGAACTGTCGACCGACGAGATACGCGACCGCTTCCGCTTCGACTTCGCGCAGCGAGCGCTCTGGCAGGCTCGTCCGGTCCGCATGCAACAGCCCATGAGCGAACTCGTGAACGAGCGTCGTCGCCATGTCCGCCTCGTTCGGCCGCTGCCTGACTGCGACGCTCGGGCGCTGGCCCTGCGGGAATTCACACACACCGCGCGCCGCGCCGTGGGACCACTCACTCGGAGACACGAGCACAACGTCCACGCCGAGCGAGTCCGCCGCGGCACAGAGCCTGGGGACGAGGTCGCTCGCGTCACCGTACGTGGCGGTCTCCAACGACGGCAGCGGCTCGCCCGTCGTC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTAGGGAGAAAACCTAGACCGGGATTGAAAC # Alternate repeat : GTCGCAGTAGCGAGAAAACCTAGACCGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //