Array 1 101888-104310 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQZ01000017.1 Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 strain NBRC 107789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 101888 29 96.6 32 ............................C CATGATCGTCGCCTCACGCAGCGACCGGACCC 101949 29 96.6 32 ............................C GATCTCCGACGATTCGGTCACGTCCCCGAAGG 102010 29 100.0 32 ............................. CTCCCACGACACCCGGCAGTACCGGACGTCAA 102071 29 96.6 32 ............................C GGTGCCCTGGACAGCTATAGCCCTCACGATTT 102132 29 96.6 32 ............................C GATGGGCCCCAGGGTCAGGGGGATGTCGTCGA 102193 29 100.0 32 ............................. TATTGAGGGCGGACGGGTCCCTTCGCTATGCG 102254 29 100.0 32 ............................. CGTTCCGCCGGCGCCGAACCCGCGCCACCGAG 102315 29 96.6 44 ............................C TTGAGGTTGAGCTGCATGCCGGGCTTCCACCCGAACGGGCCGAA 102388 29 100.0 32 ............................. AACGACGTCATTCGGATCCCGATGACCCTCGA 102449 29 100.0 32 ............................. ACGTTCACCCAGGCCGAGGTTGACCGCATCAT 102510 29 100.0 32 ............................. GACGGCGCGGGGGCCGCGATTGACACCTCCGG 102571 29 100.0 34 ............................. GCCATCCTTGATCTCGAACAGCTGGTCGACCAGT 102634 29 100.0 32 ............................. ACGAACGTCACGAACCTGATCGACACCACGCG 102695 29 96.6 32 ............................A GGGGCGGCGTCACTGCGGGAGCACATCTCCCA 102756 29 100.0 32 ............................. TTCACGTTCACCCCGGAGATCACCCCGGGCGC 102817 29 96.6 32 ............................C ACGTGCCGCAAGTGCTCGCGCCACGAAAAACG 102878 29 96.6 32 ............................T CGACCTGAATCCAGCGGCCACCCTCCGGGTAG 102939 29 96.6 33 ............................T GTGAGTGAGCCGCTCCTGATCGCGATCATCTCC 103001 29 96.6 32 ............................T GCCCCGGTGACCCCGGGGAGCCGGTTCCCTGC 103062 29 100.0 32 ............................. CGCTGGGACGACAAGCGCACCCGACTCCCTAA 103123 29 100.0 32 ............................. GTGACCGCGGCCGTCGCCGGAACCTACGCGTC 103184 29 100.0 32 ............................. GGTGCCCTTGGTAGGAAGCTGGTTCCCCCCTG 103245 29 96.6 32 ............................C AGCGCGGCATCCTGGGCCGCGGTGTTCGACGG 103306 29 96.6 32 ............................C GAAGGGGCCCCGGAGGGGCGCTGTGCCTGTCC 103367 29 100.0 32 ............................. CTATCCCGACCAGCCCGTCGGGACCGACGGCA 103428 29 100.0 32 ............................. GTGTCCGAATTGCTGGCCCTGCTCGATAAGGT 103489 29 96.6 32 ............................C GTAGACCTGTTCCACCAGCAGATCACCGACTT 103550 29 100.0 32 ............................. CAGCGCGGCTGGGCGCCGCCGCTCGCGTGGGA 103611 29 100.0 32 ............................. GTGGAGGTCGACGCATGCGTGTTCGGTGTGCT 103672 29 96.6 32 ............................A TAGCCTCCTCCATCGACATCGCAGAGCCGGAC 103733 29 100.0 32 ............................. GTCTGGTCTCCCTGCGCCGCTGGTGCGGGTGG 103794 29 100.0 32 ............................. TTCTCGAGGGCGCACTGAATTGCGACGGTGGA 103855 29 96.6 32 ............................C GACTTCCTCCGCTCGACGGTGCAGGGCCTTGA 103916 29 96.6 32 ............................T ATCCGTCCGCGTCGAACGCGATTTTCATGCCG 103977 29 100.0 32 ............................. TCGCGGTAGGTGTTCGACACCAGGCCGTCGTA 104038 29 100.0 32 ............................. ACCTCACTGTCCGGAGTCAGCAGGTCGGCCAC 104099 29 96.6 32 ............................C TGGGATCCCGAGCCGACCGCCGAGTTCCGCTT 104160 29 96.6 32 ............................C GACGGAGCGACCTCTGTCGGCTCCGAGGCGGC 104221 29 96.6 32 ............................T GTCCCGGGTCGCGATCACACCGGACGGAACCA 104282 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ============================================ ================== 40 29 98.3 32 GTGCTCCCCGCGCGAGCGGGGATGATCCG # Left flank : GGCAGCAGCCGAAACAGAACCCGACTGGGACTTCGTTCAACTCTGGGACGAACAACTCGGCGAAGTCCAGGGCGGCGTGTCCTACGGAGAGGACCCACCCTTTTGACCGTCATCATCCTGACCGCCGTCCCCTCCGGCCTCCGCGGCCACCTGACCAGATGGCTCATGGAAGTCGCACCCGGCGTATACGTCGGCCGCATCTCCGCCCGAGTCCGAGACGCACTCTGGGACATCATCCTCGAGATGGTCCGCGACGGGCGAGCCCTGATGGTCTTCAGCGCCCGCAACGAGCAAGGCCTCGAAATCCGCAACCACGGCCACTCCTGGGAACCCGTCGACATCGAAGGCATCACCCTCATGCGCCGCCCCGGCCCCCAACAAGTAGTCACGGAAGGACCCAAAGTAGGAATCAGCAAAGCCGAGCGATACCGACGCATCCGAACCCGCCGCAAGTGATGCTGAACTAGGTGAACCCGCGGTATCCTCCCTTGTCAGCAAGT # Right flank : AGAGGAGAACGACATGACCACCATCGCCGACCGTG # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.74, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 996-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQZ01000042.1 Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 strain NBRC 107789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 995 29 100.0 32 ............................. CTCAACGACAAGAAGGGACGGCATTGGGCGGT 934 29 96.6 32 ............................G GTCGCGCTGTTCGCGTTCAGCCTTGGCCTTGG 873 29 100.0 32 ............................. CAGGCGGGCCCGAGTTCGATTTCGCGGGGTGC 812 29 96.6 32 ............................G TTGCCCTTCCCGGGGCCATGCACGACCCCGTC 751 29 100.0 32 ............................. ATGATTTGGGCGTTGAAGGCGGCTGCGCTGTG 690 29 100.0 32 ............................. TGGGTCATTGCGGTACTGGCGATCTCGGCAGC 629 29 100.0 32 ............................. CCACCGGATGGACCGATCCGGATCAGGGTACG 568 29 100.0 32 ............................. GATTCACGAATGGGTGCCGTGATCGAGCCGAA 507 29 100.0 33 ............................. GGATACCCAGCCACCCGGCGCCCAAAACGCGAC 445 29 96.6 32 ............................G CCATCCCCGACACCGCACCCTGCGTGCAGGGC 384 29 100.0 33 ............................. GGCCGCACAGGATCGACTCCGCCAGATCGCCGT 322 29 100.0 32 ............................. ACCTACCGATGGCAGCCGGTGCGCGACCTCGG 261 29 96.6 32 ............................G GGTTCCAAGCCGGGGATGGTCAAGATCGAGTT 200 29 100.0 32 ............................. TTGCCGGTAATGTGCGCGATTGGTTGACCGAT 139 29 100.0 32 ............................. GACCCGAACGATCCGTCGACACAGACCACCCC 78 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.9 32 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : AAC # Right flank : GGGCGCCCGCGGCGCCGGCGCCCGTGAGCGCAAGTGTTCCCCGCGCGAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [13.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 191192-188204 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQZ01000006.1 Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 strain NBRC 107789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 191191 29 100.0 32 ............................. CCTACGCCCGACCCGGACGTGTAGATCGTCCG 191130 29 96.6 32 ............................G TTCGCGGGCACCTTCCGGTCCGAGCCGACCGA 191069 29 96.6 32 ............................T TGCTGGGGTAACCGGTGTTCGACACGATCGCA 191008 29 96.6 32 ............................T TCGGTGGCCGGTCAGACTGCGCTCAAACAGGT 190947 29 100.0 32 ............................. TCTGCCCGGCCGCTGGTGGACGCACTTTCTCA 190886 29 100.0 32 ............................. CACTCGGCGGCCTGCCGTCGCACGTCACAGGC 190825 29 100.0 32 ............................. TCCCACCCCGCCGGATACGCGGTCGGGGACCA 190764 29 100.0 32 ............................. ACCAAGGAGATCAGCATGGCAACCACTGACGA 190703 29 100.0 32 ............................. TGATGCATGGTCGGACTGCCCCAGCCTGCCGG 190642 29 100.0 32 ............................. CCGTCAAAGTAGGCGTCCGGGTAGCCGGTGCC 190581 29 96.6 32 ............................G CAGTCACGATCACCCGGACCAGGAGCGCGGCC 190520 29 96.6 33 ............................T CTCTCCGCCCAGCTCATTCGCGCGGTCACGCAA 190458 29 96.6 32 ............................T CTGCGGGAGGCGTTGTCGCCCGCGGAGTTCAT 190397 29 96.6 32 ............................T CCCCTCCGCCTGAAACTCAACCTCAACCATCG 190336 29 96.6 32 ............................G AGGTAGAGGTCCCCGAGCATCTGGCGGGCTAC 190275 29 96.6 32 ............................G AGAAGCGCGTCACGGACGCGTCACGCCGTGAC 190214 29 100.0 32 ............................. ACCGGATGGACCATCCTCCACGGCGACACCGG 190153 29 96.6 32 ............................G CGATCCGGATCTCTTCGGTGCTCTCGGCCAGC 190092 29 96.6 32 ............................G ATCCCGGGCGAGGGCATGTTCAAGGATGTGGC 190031 29 100.0 33 ............................. TGACCCCGCAGATCACCGGACAGGCGGTGGTCC 189969 29 96.6 32 ............................T CGACCTGAATCCAGCGGCCACCCTCGGGGTAG 189908 29 96.6 32 ............................G CCGGAGCATATGGAGGTCGTGACCCTCCGGGA 189847 29 96.6 33 ............................G GAGCGAGCATGGGTGCATCCGGCCAGTGGGGCG 189785 29 100.0 32 ............................. AGGACATCGGCGAGCGGTCGGGGGGCGGTGAT 189724 29 96.6 32 ............................T GGTGGGACCAGGGAGACTACCCGTTCCCGGTA 189663 29 96.6 32 ............................G AAGTCGATGCACTGCTTGATGAGTCCCCGGTT 189602 29 100.0 32 ............................. GTGATCTGATGCACCGCCCCGGCTTGGGTGCG 189541 29 96.6 33 ............................G CACTTGCCTACAAATCCCTGTCCGATCTGGTCG 189479 29 96.6 32 ............................T ATAGACGGCCGGGCGGGTGGTCACAGGCTGCT 189418 29 96.6 32 ............................T TGATCAGCAGGTTGATGATGCCGCTGCCGAGG 189357 29 100.0 32 ............................. GCGTGATACCCCGTCTGCGAGTCGTACGCGGA 189296 29 96.6 34 ............................G GACAGGGCCGCAGTAGGCACCTGTCCGGCCGTGC 189233 29 96.6 32 ............................G CTCGATGCAGCCGGACTACACGACCGACGAGA 189172 29 96.6 29 ............................A CCTAAAGCGGTTGACATAGCAACCGAAGC 189114 29 100.0 32 ............................. ACCCCCAGCGAACAGAGGAGAATCTCATGACC 189053 29 96.6 32 ............................G GTCGGCGGGGCAGTAGAGCTGGAGCAGATCAA 188992 29 96.6 32 ............................T CTTGGAAACTACATAGCGTTAAATGGGCGGCA 188931 29 96.6 33 ............................T CACGATTCCGCTCATTGAGCGGGACCTGATCGA 188869 29 100.0 32 ............................. GCAAAAGAGGCCCCCGACCCACCCCGTGAGGG 188808 29 100.0 32 ............................. ATCTCCCAAGCCGCCGTGATCATCGGCGTGCA 188747 29 96.6 32 ............................G GCATCAAGCAGGGCAACCTGATCACCATCCGC 188686 29 100.0 31 ............................. CCAAAGCGTACGCGCTCGGGCAACTGTCGGC 188626 29 100.0 32 ............................. TGGAAGCTCCGGACCCTCAAGGATTCCACCGG 188565 29 96.6 32 ............................G CAGACCACTTCGGTGGACTGGTCCGGTATCAC 188504 29 93.1 32 ...................T..C...... GCATACACCGAGGTGCCCATGTTCCGGGGGAA 188443 29 93.1 32 C.......T.................... CGTTCGTGCATGTCGCCGCTCAGTTTGCCTGA 188382 28 96.6 122 ....................-........ CGGGCCGGCTTGGTTGTCGACGGCGGTTGAAGAGTAGACAGTAACGCCGCCGAAACTGACCAGTTTTCAAGCGCCGTCGACAATGATCCCACGCAGAACTGCCTGCCGACCGTGATCGCGAT 188232 29 89.7 0 .....G.....A................A | ========== ====== ====== ====== ============================= ========================================================================================================================== ================== 48 29 97.5 34 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : CACCGGATCCTGTTCGCTACCGCGACCGAGTGGGTCACCCGGCTCACCGACGCCCACCGCGCCGGCCGACTCCCGCTCGAGCTGACCCGGCTACGACGCTACGGACTGATCATCGTCGACGAGGTCGGCTACCTGCCCTTCGACCAAGACGCTGCGAACCTCTTCTTCCAGCTGGTCAGCAGCCGTTACGAGCACGCTTCGCTGATCCTTACCTCCAACCTGCCCTTCAGCGGCTGGGGTGGTGTCTTCGGTGACCAGGCCGTCGCTGCCGCGATGATCGACCGCGTCGTCCACCACGCCGACGTCCTCACCCTCAAAGGCGCCAGTTACCGACTACGCAACCGCGGAATCGAAACCCTGCCCAGCATCAAGACGCAAGACACGGCAGACTAGGAACAACACGAACCGGTGGCCTCGTTTTCAACCGTCGGTTCGGCCTCAGTTTCAAGCGCCGTCGACAATGATCCGGTCGCGGGAGAGGTCCGGCGCAGCTCCGGGCA # Right flank : GAAGTGGAGAAGAGCCACACACCTCCGCCCACGTACCGCCCGGCCGGGAGACACCTCCGCTCGGACGAAGAATAGACCACTTGACAAGGCATTTACCTCGGGGTCGAGCGAGTCTTCTGGGCTGCGCATGACGTCCCGCATCCAGTGCCCCGAACCATCCGCAGGGACTGTCTGTCTCTCCGTTACGCAAACAACTCCCGTCAGAGTCGCCGCAACCGATCCCGTCAGCCCTGCAGAAATGCCAGCACCGCAGTCACCCGGCGATGCACCTCCTGGTCGCCGCGCAGGCCGAGCTTGGCGAAGATCCGCTGGGTGTGCTTCTCCACCGCCCCCTCGGTGACCACCATGGCCCGGGCGATCCCGGCGTTGGTGTGCCCCTGGGCCATCAACTCCATCACCTCCCGCTCCCGCGCGGTGAGCTGTCCCAACGGATCCTGGACCCGGCGCCTGCCCATCCACTGGGCCACCACCTCGGGGTCGAGCACCATCCCACCGACGGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195507-193464 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCQZ01000006.1 Granulicoccus phenolivorans DSM 17626 = NBRC 107789 = JCM 15570 strain NBRC 107789, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 195506 29 96.6 32 ............................T CTCTGCGCGAACAGCTGCGCGATCAGCGCGGC 195445 29 96.6 34 ............................G AACGGCCTTGCGAAGGACGCGACCGAGGCGTTCG 195382 29 100.0 32 ............................. TCTGCCGCCCAATCGACCATCCCGGCCTGACC 195321 29 96.6 32 ............................T GATCCGGCTGATCAGGTGTGGGCGACCGGCGC 195260 29 96.6 32 ............................G ATGTAGCGGGCCAGCCGGTCGGCGTGGGTGCC 195199 29 100.0 32 ............................. CCACGACATGGGCGGCGTGGTCGACGTGGGGC 195138 29 100.0 32 ............................. TGCTCCTTGGCGCCGCCGTTGAGCTGCTCACC 195077 29 96.6 32 ............................T CCATGCGTCCTTGGCTTCGATCATCAGGACTG 195016 29 96.6 32 ............................G TTTGCGTACTGGATTGAGTCGAAGTTCAGCGG 194955 29 96.6 32 ............................T CATTGACAACATCGAGACCACCCCGACCCTGC 194894 29 100.0 32 ............................. ATCAACTGATTCCCGACAAACGCGAGCAACTG 194833 29 100.0 32 ............................. ATCAACTGATTCCCGACAAACGCGAGCAACTG 194772 29 96.6 32 ............................T GGTGAAGGGGCCGCCCGGATGGACGGCCCCTT 194711 29 96.6 32 ............................G GCAGCGATGATCGTCGCGACGGCCGGGGTCAC 194650 29 96.6 32 ............................G CCATGGACAACCTCTTGACCACTCGGCAGACA 194589 29 96.6 32 ............................T GGTGGGGGTGATCGCGCACGCGGTCAACTGAG 194528 29 100.0 32 ............................. GCCATACTGCGCGGCTCAGCGGTCACCAACTT 194467 29 100.0 32 ............................. TGGCCGACCGGCTTCGTCTGCGGGCCCCAGCC 194406 29 100.0 32 ............................. GACGACTCGACCTGGATGCCGATCATGCCGAG 194345 29 96.6 32 ............................T TTCTACCAACGAACCAGCATTATCGGCAGTCA 194284 29 96.6 32 ............................G GAGTCGCTGTGATCGAGCGCAATGAACATACC 194223 29 100.0 32 ............................. TGGCCGACCGGCTTCGTCTGCGGGCCCCAGCC 194162 29 96.6 32 ............................G GTCGGCCTCGCAATCCTCGCCCAATTCATCCG 194101 29 100.0 32 ............................. TTCCGGTCCGCGTGCACGGTGTCACTCACCTT 194040 29 96.6 32 ............................G ACCTCGACGCCGCTCACGACGGCGCGGACGGT 193979 29 96.6 32 ............................G TAGGCGCTCGACCCCTCCGGTAGGGCGTCTGC 193918 29 100.0 32 ............................. ATCAAGAGGCGGCTGCGGCTGATCTCGTCCTG 193857 29 100.0 32 ............................. CTCAGCCCCGACCTCGGCGATGAGTGCCCGCA 193796 29 100.0 32 ............................. GAAGGTCCTCACACGTCCACCTCGATTGTCAG 193735 29 96.6 32 ............................T CCTCCACCAACTCCCTTGCCGTCTTCGCCGTC 193674 29 100.0 32 ............................. ATCCCCCACAGGCCCGAAAAAACCGCTCCGGC 193613 28 93.1 32 ....................-.......G GACTCCAGACCCGCATGCCCGCCCGGGAACGC 193553 29 100.0 32 ............................. CCCGCGCGTGTACCCGGACGGATTGCCCGAGC 193492 29 89.7 0 ..........................TGT | ========== ====== ====== ====== ============================= ================================== ================== 34 29 97.8 32 GTGCTCCCCGCGCGAGCGGGGATGATCCC # Left flank : GGGGATGATCCCGGGACAGCCATCAGGCCACCGTCCACAGGCT # Right flank : CGACGGCACTCCAAAATGAGGCCATAGCGGCAGTCGAAAACGAGGCCACCCAGACAGATTGGTTGGGTGATCTCTGTGGAGGATTGGGCTCTGATCAGGCGGCTGGTTGCCGATGGTGTGCCGCAGCGTCAGGTCGCTCGGGACCTGGGTATCGGGCGGTCAACGGTAGCGCGGGCGGTCGCGTCGGATCGTCCGCCGAAGTACGAGCGGCCGGCGGTGCCGACATCGTTCACGTCGTTCGAACCGGCGGTGCGGCAGTTGCTGACCGACACTCCGAGCATGCCGGCCACAGTGCTCGCCGAACGGGTCGGCTGGGAGGGGTCGATCACCTGGTTCCGCGCGCATGTGCGACGGCTGCGGCCCGAACACAGGCCGATCGATCCCTCGGATCGGTTGACGTGGTTGCCCGGGGACGCTGCGCAGTGCGATCTGTGGTTCCCGCCGAAAAAGATCCCCTTGGAGGACGGCACCACGAGCCTGTTACCGGTCATGGTGATCAC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //