Array 1 113570-114696 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLML01000103.1 Pseudomonas aeruginosa strain WH-SGI-V-07181 WH-SGI-V-07181_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113570 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 113631 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 113692 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 113753 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 113814 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 113875 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 113936 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 113997 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 114058 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 114119 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 114180 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 114241 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 114302 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 114363 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 114424 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 114485 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 114546 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 114607 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 114668 28 79.3 0 A..........A..C..-.....A....T | C [114672] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123869-125607 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLML01000103.1 Pseudomonas aeruginosa strain WH-SGI-V-07181 WH-SGI-V-07181_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 123869 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 123930 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 123991 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 124053 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 124114 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 124175 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 124236 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 124297 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 124358 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 124419 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 124480 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 124541 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 124602 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 124663 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 124724 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 124785 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 124846 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 124908 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 124969 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 125030 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 125091 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 125152 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 125213 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 125274 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 125335 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 125396 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 125457 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 125518 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 125579 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //