Array 1 18011-17006 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRWT01000029.1 Escherichia coli strain 3_189_1 NODE_29_length_61398_cov_28.103752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18010 29 100.0 32 ............................. ATACGCCCCAACCAGAAATAAATTTAGGGGAT 17949 29 100.0 32 ............................. CAATATTCACAATGTGGGATATATCCGATCAC 17888 29 100.0 32 ............................. TAGTCAAGCGGTAATTCATCGTCTGCAGATCC 17827 29 100.0 32 ............................. GCTAATTTACGTAATTTACGTGCTATTGCACT 17766 29 100.0 32 ............................. CCTCTGGTTTAAAAAAGCCGCCGTCAGCGAGC 17705 29 100.0 32 ............................. ACGCAGAATCACGACGCGGTAGAGCGTTACGT 17644 29 100.0 32 ............................. ACCCCGGCAGTGTCTGTTTGACTAATTTATGC 17583 29 100.0 32 ............................. GCTGATGGTCTGGGAGTGTCCATCGGGCAACT 17522 29 100.0 32 ............................. GAAGTAGGCCTGACAGTGATTGAACGCATACT 17461 29 100.0 32 ............................. TGGGTCATGCCGGTGATCGCCTGCCCGTCGTG 17400 29 100.0 32 ............................. GCGGCGCAGGGATTCGTACAGTCAAAAACGCC 17339 29 100.0 32 ............................. AGTTGGGGCGGCGCAATAACGAGACGATACGC 17278 29 100.0 32 ............................. GGGAGTGGCACTTCTGGGGTAGCGGCGGCCCT 17217 29 100.0 32 ............................. TCAACGCGCTCAGACGTTGCGTGAGTGAACCA 17156 29 100.0 32 ............................. AAATATCCAGGGCTGGGCTGGAGGCAGACGGC 17095 29 100.0 32 ............................. CCCGGAATGCATTCTGAAGGTTTGCTGTATAT 17034 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAATTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATAAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACTGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 143928-142678 **** Predicted by CRISPRDetect 2.4 *** >NZ_VRWT01000007.1 Escherichia coli strain 3_189_1 NODE_7_length_152969_cov_28.241014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 143927 29 100.0 32 ............................. TTTCAGAAAAGTACGGCTCAATTGATCGCCCC 143866 29 100.0 32 ............................. GGGCTAAAAGACGCGTCGCCGCCAGGCGGCTT 143805 29 100.0 33 ............................. TGGATTAATCCGCGGCTGGCGATATCTCGCAGC 143743 29 100.0 32 ............................. CCCCTGTCGCCGTTGGCGGATTCTTTCCTGTA 143682 29 100.0 32 ............................. GCTGATGACAGATCAAACAGCCGCAGAAGCTG 143621 29 100.0 32 ............................. TCGAGCTGCTGGCGCAGGACGTCGCAATTTAC 143560 29 100.0 32 ............................. CGATAAACGCTCAATACCAGCCGGAATAATCG 143499 29 100.0 32 ............................. GCGGAATCTGCTGCGCACAAGTTACACGGCGC 143438 29 100.0 32 ............................. CCTTGATCGGATTCCAGAAACGAACCACTAAA 143377 29 100.0 32 ............................. CCGCACCCCGCGCGGTTGGTCTGGATGACAGT 143316 29 100.0 32 ............................. TCGTTTAGTGTGGAATTTGGCGACGCGGAGCG 143255 29 100.0 32 ............................. AATTAAATGATTTTGATGCGCGCCGACTTGAA 143194 29 100.0 32 ............................. CCACGCGGCTGCATTCAGTGATATCCAGTTTG 143133 29 100.0 32 ............................. CATCTATTTATCTCGCCGCGATTGGCGATAAC 143072 29 100.0 32 ............................. CCGAACGGCTGGCGAAGCAGGTGGCTGGCGTA 143011 29 100.0 32 ............................. GTTTACCGCCCCGCAGAGGCGCTGGCAGATCC 142950 29 100.0 32 ............................. GGATGACCTGTCGCTAAAACTCGCCGCGTACA 142889 29 100.0 32 ............................. TCCGTTTGGTCCACCAAATGTTTGATGCTTCA 142828 29 100.0 32 ............................. TTCAGGGTGTGATTCCGCATACCAAGCAGTAA 142767 29 96.6 32 .A........................... GGCGCACTGGATGCGATGATGGATATCACTTA 142706 28 72.4 0 .AA........C..T....T-.G.....C | C [142681] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //