Array 1 162525-159608 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMSL01000014.1 Frateuria sp. Soil773 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 162524 28 100.0 32 ............................ TCTTTAGGCAATGCGCCCACCTGCGTAATTGC 162464 28 100.0 33 ............................ CTGCTGCCGACGGCGCGAATCAGCCTGCTGCGA 162403 28 100.0 32 ............................ TTGAGCGGCACACGCATTTTCATGTTGTGCGC 162343 28 100.0 33 ............................ AGTCGCCCGATCGAAAGAAGGCGACGGCCTGCT 162282 28 100.0 32 ............................ TGCTGCTATTCGCGGCATCGACACGACGACGC 162222 28 100.0 32 ............................ AAGGTGTGCGGTGGTGTCTCGTGCTACGACGC 162162 28 100.0 35 ............................ GCCGACCTGGACGTCAGCGGCGGCGTGCCACCGTT 162099 28 100.0 32 ............................ TGACGCCGAGCCGGCCGCGGCGAACCAACCGT 162039 28 100.0 32 ............................ GTTGCGACGCGCTACGACATAGCGATCAGCCG 161979 28 100.0 32 ............................ GTCACAAGGCGCAGCAGGATGGATTGATATAG 161919 28 100.0 32 ............................ TGGCGAAAGACCTGGGCATCAACAACATCGCC 161859 28 100.0 32 ............................ AGGTGCGGCCCAGGTAGTTCACCAGGTACTCG 161799 28 100.0 32 ............................ AAAACGGATGCGATTACCCAGGCCGAGATCAT 161739 28 100.0 33 ............................ CCGATTCGTTGGTCGTAATTGACGAGTGCCACA 161678 28 100.0 32 ............................ CTTGACGGTCCGACGGTCAAGGTACTTTACTT 161618 28 100.0 32 ............................ GCGCATTCTGCCCCCGAGAATGGCCGCAGTAC 161558 28 100.0 33 ............................ CAGCCACTTACCGCCGCGGAATCGCGTGTTGAT 161497 28 100.0 32 ............................ TGGTCCATGAGCGCACCTTCAACGGTAAAGAC 161437 28 100.0 32 ............................ TGGGCGCCGGCTACGAGCTTCCCTTCCGTGTC 161377 28 100.0 32 ............................ TGTCGAGCGGCAGTACCTGGTGCCGGACAAGC 161317 28 100.0 32 ............................ CACCCGTGCCGAACGTTGCTGCGGAGCAGAGC 161257 28 100.0 32 ............................ TGATCGGCATACACCCACAGCATCCGGCGCCG 161197 28 96.4 32 .................T.......... TGCGTTCAGACGCAGTGGGTACAGCCTCCACC 161137 28 100.0 32 ............................ AACGGAATACGGCACGGCTGCGGGAAATCGTT 161077 28 100.0 32 ............................ TCCCACACCTGATCCGCCTAAGGTCTGTGGCG 161017 28 100.0 32 ............................ AGCGACAGCGGGCGACCCGTTGCTTTCGGCTG 160957 28 100.0 32 ............................ TTCTCGCGCTCCGCGGTCTGCTTGATCTCGCT 160897 28 100.0 32 ............................ ATGAAGTGGACTTTGCCCAACCCCTGGTCGTG 160837 28 100.0 32 ............................ TGGCAGTAGCACATGCCGTCTGCCTCGGGATG 160777 28 100.0 32 ............................ ATGCTGAATGGTTCCAGCCGAGCGGCGCTGAC 160717 28 100.0 32 ............................ TGCGAGGACGCCAGTGAGGAAGGCTTCCGCCA 160657 28 100.0 32 ............................ GGCAACCGGGGTGCGGCCAGCGCCACCGGCAA 160597 28 100.0 32 ............................ GCGCAAGAAGTCCAGCAGCCCGCAAGGTGTGG 160537 28 100.0 32 ............................ ACCGCAATGCTCGGCGCGATCGACAATGACCT 160477 28 100.0 32 ............................ AGCTCAGTGCGAACACCGGCGTGCCGTTCACG 160417 28 100.0 32 ............................ GAGTCGGGTTGTACGAGCCGTCACGGGCCAGC 160357 28 100.0 32 ............................ AATCCCATTGCGAGCCGCTCTAGTGTTCGCTT 160297 28 100.0 32 ............................ AAAAACGAACGTGGTCAAGAGCCAGAACGCAA 160237 28 100.0 33 ............................ GTACTGGACGTGCCAAGACGCCCATGTATGCCT 160176 28 100.0 32 ............................ CGGCCGATCCCGCCGACGACAACTGCCGCTGC 160116 28 96.4 32 A........................... CTTGGGCGTTTAGACGGCTATTTAATGTGAGA 160056 28 100.0 32 ............................ GTGGACGGGCTGGCGCATGCGCGGCGCGCACC 159996 28 100.0 32 ............................ ATCATGAGCGGCGTTGTTCTTCTGTGGGCCAG 159936 28 100.0 33 ............................ TTATCGCTACAGCGATCAGCAAATGTCGGACAT 159875 28 100.0 32 ............................ TTCGATATCAAGCCCGCCATGGCCGTGCATAC 159815 28 100.0 32 ............................ GTCGTGACCGGCGAGCTTGCGACCGGCAAGTC 159755 28 100.0 32 ............................ ACACTTGATCGATCGCGCCCGCATGCTCGGCA 159695 28 100.0 32 ............................ TTGTCCAGGCGACGCCTGTGATGAACAGCGGC 159635 28 78.6 0 ....................AAA.T.CG | ========== ====== ====== ====== ============================ =================================== ================== 49 28 99.4 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGTACTGAAGGAAGTCATGCGACATGATCGCATCTATTGCCGTGCACGCGTGCGCGGGGGCAACCTCGATCCGCGCTGGCTGCCTGGTGGCGCCGCTGTCCGACTGGACTCTCCGAAGCAGGGCAGCGTGCACAAGCGTTGCGCCGTGGCCGCTGCCATCGGTGTGCTTCCTGCTGGATTTCCTGGCGGCGGGGCTTGCTTAGATCGACGATGGATGGGACGCGCGCGATCGCGTGGACAACTCGGAATCGGAGATGGCGCTCATCGCTTCGGTTCACCGTCTTCGGCGTACTGCTCGTGCCGGCCCTCAATCCAGGGCGGCTTCGTCGGCTATGCTCGGATGGAATCGCCACTGCCTCCTGCTCCCACCCCTTTTCCGGTGCTGTATTCTTCTTTTTATATAATTCAAACACTTGCCGGATGACTCCCCAATAGGGGGTTGGCTCTCTTTTTTGCCTATCTTCCATATCGATCAAATACTTGGCTCAATAGGCGTCTA # Right flank : TCTGACGAGCGACAGCGCTGGCGCCGTGCTCGCGGTCTATCCGGTGGCGACAAGCCTGCCGGTGCGGACCATGCGGTTGCCGATGGAAAGGTGTTCCTGGCCGCAATACGGGACACATGCGATCGGATATCGCCATACCGTGTCGGGTCGGAGGAAACTTCATGCCGCTTCGCCGGTCCGAAGCGGAGGCCGGTGCTCCCGTGTCATGTCATCGACTTCCTGCCCATCGACTTTCAAGGACAAGCACATGAACGCAGTGACGCGGTTTCTGGTGCGCAACCGGGGGTTTTTCGTCTTCATGCTGGGCATGCTGGTGTTCCGCAGCGCCGTCGCCGACTGGAACGTGGTGCCCAGCGGTTCGATGCAGCCGACGATCGCGATCGGCGATCGCATCCTGGTGGACAAGGCGGCGTACGACATCCGCCTGCCCTTTACCCGTGTCTCGCTGCTGCACCTGGCCGATCCGCGGCGTGGCGACATCGTGATCGTCGATTCGGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13759-9039 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMSL01000023.1 Frateuria sp. Soil773 contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 13758 28 100.0 32 ............................ TCCACTCGCCGAACCCTTACCACCATTACCAT 13698 28 100.0 32 ............................ GCGTGGGCATCCAAGTATTTCGCCGCCGGGCA 13638 28 100.0 33 ............................ TCTTTAGGCAATGCGCCCACCTGCGTAATTGCA 13577 28 100.0 33 ............................ CAAACGGGGCACGAGCCGCCCATCGCACCCGGA 13516 28 100.0 32 ............................ AACGGGCCTGGATGTGGCCTCGTCGCTTGGCG 13456 28 100.0 32 ............................ TGGCTTCGGTTCCCTACGCGTTCGATATCCAC 13396 28 100.0 32 ............................ TGCTGGACCAGCAGGCCCTTCTCGGCCACGCG 13336 28 100.0 32 ............................ TTGAATATGGCGCACTGGATATTGCTCATTGC 13276 28 100.0 32 ............................ TGCCCCGTGCCCAGGTTCGACCCCTGATTACC 13216 28 100.0 32 ............................ TCTGGTGTTATTGGAACGCTTTATCAGCCGAG 13156 28 100.0 32 ............................ ACGATATCAATACCGTGATGACCATGCTTCGC 13096 28 100.0 32 ............................ TTCACTCTTCTTCTGCTGCGTCGGTTCCGACT 13036 28 100.0 32 ............................ AGCCGGCGCCGCAGCCGGCGCAGGCGGTCATG 12976 28 100.0 32 ............................ AATGGCTGGCGACGCTGCGGCCGATTTTCTTG 12916 28 100.0 32 ............................ CAGGGCTTACCCAGCAACTCGATAGGCGGAAT 12856 28 100.0 33 ............................ ACGGCACCTTGCGGTCCGTGGTGTCTTTCTCGG 12795 28 100.0 32 ............................ GCCAGCTTTGAACAGACCGCCCCGCGCCTGCT 12735 28 100.0 32 ............................ TTTGAAACGCGAGGGCAGCGATTCCCGCGTCA 12675 28 100.0 32 ............................ TCGCGCCCTTTTTTTTGGGGTGGACGTATGGA 12615 28 100.0 32 ............................ TCACGGTGCGCACACAGCCGCGTCTTTACTGC 12555 28 100.0 32 ............................ CAATTGAGCATCGGTGAGTTCTTCCGGATAGC 12495 28 100.0 33 ............................ GACTCAGAACAGGTGGGGCAGTTGGTCTACGTA 12434 28 100.0 32 ............................ TTCGCGCAGGCGACGGACGGCGAGGTGGATAC 12374 28 100.0 33 ............................ GTTGAGGGTGGCACATACGATCCCTACAAGCGC 12313 28 100.0 32 ............................ CTTGGTCTTCTTGGCCGGTGCTTTCTTGGCGG 12253 28 100.0 32 ............................ TGCTTGGTGATGGCTTCCTTCACCGCGTTGTG 12193 28 100.0 32 ............................ AGCTCATAAGCCGGATCGAGCCATGCCGGCTT 12133 28 100.0 32 ............................ TCGCCGCGCGCTTGTCGAGCTTTTCCAGCGCC 12073 28 100.0 32 ............................ TTCGATGAATGACCAGGTGTCCAGGTACACGC 12013 28 100.0 32 ............................ TGAGGACGCACGCTGCCCGCCGACGTATCGAC 11953 28 100.0 32 ............................ TCGCGCAAGCGCTTCTAGCAGCGGCTCAGGAA 11893 28 100.0 32 ............................ TGCTGGGCGATGGCATATGGTTATCGACTTCT 11833 28 100.0 32 ............................ TGGGCGACCTGACCACGCGGCTCCGCGCGAAC 11773 28 100.0 32 ............................ TGCGTGCGCAGGTGGAGTTCACCCCCTACGGC 11713 28 100.0 32 ............................ TGCAAGCGCGCAACCCGAGCCATGGCTGCAGT 11653 28 100.0 32 ............................ CACACCCACGCCCCAACGGCGCAGCTTGCTCT 11593 28 100.0 32 ............................ ACAACCATGCCTTCATGTCACCGCCTCCCCAG 11533 28 100.0 32 ............................ ATGCGCATGCGCGTACCACGAGCATTGCGTTT 11473 28 100.0 32 ............................ TGCGTCGTCGTGTCGATGCCGCGAATAGCAGC 11413 28 100.0 32 ............................ TCCGATCTGAGCGCCCTGCTCCACCGTCAGGG 11353 28 100.0 32 ............................ ACGCGCATCGGCGGTCAGGCCGCTATCGACCT 11293 28 100.0 32 ............................ ACGATGGTGTCGGCAGGGCCGGGAGCAGCTGC 11233 28 100.0 32 ............................ GGCGGGCTTTTTCATGCCTCCAGCGCCATCTC 11173 28 100.0 32 ............................ TTGTACAGAAGCCGCCCAAGCAAGCCGAGAAC 11113 28 100.0 32 ............................ CAGGCGAGCCGGGCTCGTGGCAGTCTGATCCG 11053 28 100.0 32 ............................ ACTAACCAAGCTGTTGTCGGGCTGCGGAGCAG 10993 28 100.0 32 ............................ AGGACTCGGGACTGATCCGCCCGCCACTCCAC 10933 28 100.0 32 ............................ CCACCAGGGCCGCCAGTCCACCCACACCCGCG 10873 28 100.0 32 ............................ GTCAATGCCGCGCACGCAGTGTTTCACCGGCC 10813 28 100.0 32 ............................ AGCCGGGGGCGTGCGTGTCCGGTGGCGACACC 10753 28 100.0 32 ............................ TGACCCGCCTACCGACATTCGAGCCTCCGATC 10693 28 100.0 32 ............................ CCTTGGACGGGTCGGGATCGGCGCCACCCGCT 10633 28 100.0 32 ............................ CTGACGCCGAAAGCGTTGCCCGCATGTGCGAT 10573 28 100.0 32 ............................ TTACCGTGAAAATTCTTGCAGGGGGGAATGGC 10513 28 100.0 32 ............................ AGCGCACGCAGCCATCCCCCCAGGAAACACTT 10453 28 100.0 32 ............................ GGGACGGCGTAGCGCGTGCCCTGCTCCGTATG 10393 28 100.0 32 ............................ GGTAGAGGCGACGTCCGTGATGCCGCCGGAGC 10333 28 100.0 32 ............................ AATCCGTGAGCCGAGCCTCAAGTGTTGTTGAG 10273 28 100.0 32 ............................ AAAGCCGTACCGTGGGCTGAAGGCCGGTTGCG 10213 28 100.0 32 ............................ GGCGTGTCCTCCTCGTCGGTTCCATCGATCCA 10153 28 100.0 35 ............................ ACCAGCACGTCGGGTGCCGCGACCTCGCCAGCGCG 10090 28 100.0 32 ............................ TGACACTGCGATATGTGGAGCTGGCCGATGCA 10030 28 100.0 32 ............................ CGGCCCGGCGACGCTCGATCCCAAGAGCTTCG 9970 28 100.0 32 ............................ TTCGCGGAACGGGTTGTCCTTGGACAACACGG 9910 28 100.0 32 ............................ TGGATGCGACGCTGCTCGGCCTCGTGGTCGCG 9850 28 100.0 32 ............................ GGTATGGATCGCCCACGCCACGCGGTGCGCCA 9790 28 100.0 32 ............................ AGATCCGTACATCGCGGCGCTGGAAGCCCTGC 9730 28 100.0 32 ............................ TGCGTGAGGTCGCGGGCCGCCTCGTCGGGTGG 9670 28 100.0 33 ............................ GAATCCCCGGCAGAACCGATTTCGGCCAAGTCA 9609 28 100.0 32 ............................ CAGGTTATCCGGTGCGAGTACCTGACGCCGGG 9549 28 100.0 32 ............................ TGCTCACCGATCCGAAGATCAAGGCGCAGATG 9489 28 100.0 32 ............................ TTGCACAACGTACCGGCATAAGGCTCGATGCT 9429 28 100.0 33 ............................ TGCTCGCGCCGGCGCTCGATCCGCGCATCACAT 9368 28 100.0 32 ............................ TTCACCGACGAGGTGAAGGAGCAGCTGGTGGA 9308 28 100.0 32 ............................ TGCGGCAGTCCGGCCTCGGCCTGTTCGTCCAG 9248 28 100.0 32 ............................ ACCTTGGCACCGTAAGCGATCTGGTAGCTGAT 9188 28 100.0 32 ............................ ATGTAGCCTGCGGCCATCAGGCTTTCCAGCGT 9128 27 96.4 32 ......-..................... AGTCGCGAAAGGCGGACCTTAGCCCATGGACG GACG [9106] 9065 27 89.3 0 ...........AA...........-... | ========== ====== ====== ====== ============================ =================================== ================== 79 28 99.8 32 GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Left flank : CACGCTGCGGTCGCTGCTGCAAACCGATTGGCTCAAGGGCATGCGCGACCATGTCCGGATGACGGACATCGCCGAAGCTCCGTCCAACGCCCCGCACCGCACCGTCCAGCGCAAGCAGTTCAAGACCAGCGCCGACCGGCTGCGGAGGCGGCGCATGCGGCGCAAGGGTGAAACGGCAGAGCAGGCGGCCCAGGCCATTCCATCCACCATGGAACGCCGCCCCGGCCTGCCCTACGTGCACCTGCGCAGCCACAGCACCGGGCAACCGTTCTGCCTGTTCATCGCCCTCGGACCGCTCGCCCCGGCCGCGACTCCGGGCAGCTTCAACAGCTACGGCCTGGGCGGGACCACCACCATCCCCTGGTTCTGACCCTTTTTCAGCACCGCACCTTTCAGGCCATACCATTCAACAACTTGGCGGCTGGCCTTCCAAAAGGGGCCAGCCTTCTTTTTTTGCCTTTCTTGCCCGTTGATCAAATACTTGGCGGAATGAAGCTCTA # Right flank : CTCCCGAACACCCAGACCAAAGCTTGCCGCCAACGAAGGGCACTCTTGGGGAACGAGTCGAAGGTTACTGGCTTACCCTCCGCTTCCGTGCCACACCACCAAAGTGACCGCGGCGGACAATCGTCCGGCTATCGGTGACGCCGGTCGCTTTCCTGCCGCGCACCCGTGCGTTAGCCTCCCTGGACGCAGGAATGCGGGCGCCGGGGCGCCACGGGGCATCTCCTGCCAAGGAGGCAGGTTCGTATGGAACGGATGGATGCCGCGACGTTGCTGTCAGCCATGTTCAGCGCCGCGACCCGCCTGTACGCCCTGGAAGGCGACGGCGCANCTGGCGCAACTGCAGGTGGAACGATGGTACGGCGAGGAAGCGCTGTCGACGTGCTACGCCTGGACGATCGACGCGCTGTCGACCGATGCGAACCTCCCCCTGGACACNNNNNNNNCCTGCTCGGCCGGCGCGGCGCGCTGCGCACCACGCTGGCCGACGGCACGCGCACGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //