Array 1 4578-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLJ01000011.1 Haloferax gibbonsii ATCC 33959 contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================ ================== 4577 30 100.0 34 .............................. GCGTCCAGTCCGTGACCATCAACTACAATCAGGG 4513 30 100.0 35 .............................. AGTTTGTTGTTCCCAAACCGGACTTCCGCGCCCCC 4448 30 100.0 39 .............................. TGGACAAGCACTCCCAACCGAACATCGCCTTGAGCGCGA 4379 30 100.0 36 .............................. TCTCCTCGTTCGCTTCAAGACGCGCCCGGTCGGGGT 4313 30 100.0 35 .............................. AAACTCCCCGGCTTCGGCGAGGAGTACGACGACTG 4248 30 100.0 35 .............................. GATGTCGTAGGACTCGCTCTCGCGGTGCTCGGCCA 4183 30 100.0 37 .............................. ATAAATACGGGATGTGGTTGAGGACGGCACGCGCGCG 4116 30 100.0 37 .............................. CGTTTCGACGAACGCCGGTGCGCCCGACGGTCGCGTG 4049 30 100.0 38 .............................. CCGTACGTCGTTTGGGCGATGTCGCGCCAGTTGACCGT 3981 30 100.0 36 .............................. TCCATCCCCGCCGCGCGTCGGAACCAAATAGTCACG 3915 30 100.0 60 .............................. GTTGATCGCCGTGATNGTTGAAGCTCCATCCCCGCCGCGCGTCGGAACCAAATAGTCACG 3825 30 100.0 36 .............................. GTTGATCGCCGTGATCTTGGCGACGCCCTCGTCGGC 3759 30 100.0 35 .............................. CTGTTTCCATTGGGTCTTACTCTCGCCACCGTCGG 3694 30 100.0 46 .............................. GTCGTCGTTGGGGCGACGGCCGGGCTCGCAGGGGGCAACGGAACTG 3618 30 100.0 36 .............................. ACGCCCTCGGACCCGCATCTCCTCATCGAGACGGTC 3552 30 100.0 35 .............................. GACGACCTTCGCGGTGAATTGGAGGCCAACGAATA 3487 30 100.0 37 .............................. CTCGTGGACGTGACTTCGTTGGTTGCGCCACCGGGGA 3420 30 100.0 35 .............................. CCGTTGCATGGTCGATGATCGGGGCTAATTCGGTT 3355 30 100.0 38 .............................. AACAGCTACTACCGGGACGAGGTCGCAGAACTCGCCCA 3287 30 100.0 35 .............................. CACGCTTCGACGTTTTCGGCTTTTGGTACGCGACG 3222 30 100.0 38 .............................. CGCAAGAGCGCCTAAGCCCCCGGCGTTCACTTTCACTC 3154 30 100.0 34 .............................. ACGAGCAGGGGCGGGCAGATCGACGACTCAACGA 3090 30 100.0 34 .............................. CCGGAACGTCGCCCGCCGTGACGGCAATCGGCGT 3026 30 100.0 35 .............................. GTCGACGCGGACCTGCAACAGAGAGGTGGTCGAGA 2961 30 100.0 37 .............................. GTCCAGGTGTCGGGCATCGTCCGCAAGGCGACTGACG 2894 30 100.0 37 .............................. CACAAGACGAAAATGGTCAAACAACGAACGGCTCGTG 2827 30 100.0 35 .............................. CCCGCCACAGAGCTAGAGGCGTCCGGGTCGAACGA 2762 30 100.0 36 .............................. TTCCAGCGGTCGGTGACGCGGTTATCTTCCTCGGGG 2696 30 100.0 34 .............................. TGAGCGCCCCAACAATCGGCACAAGTGCAAACGC 2632 30 100.0 37 .............................. GTATCCGACGAACGGGTCGGAAACCGACACGGCGAGC 2565 30 100.0 36 .............................. GGCTCACTCTGAGCCTGGCGAGGGGAAGACCTCGTT 2499 30 96.7 37 .....................G........ CTCACATGGGAACCCATACGCGCGCGTACGTAAACGA 2432 30 100.0 35 .............................. AGTAGATGAACTCAGTACCGTTTGACAGGGCTTGG 2367 30 100.0 36 .............................. TTCAACGACCGTCGTCTCGTTGAGGAGGTCGTTGGG 2301 30 100.0 35 .............................. TCGACGTTTGACGATTCGAGTCACTTTCTGGAAGC 2236 30 100.0 37 .............................. ACGTGACGTCTCGGATGGACCTCGGCGAGGGTCTCAT 2169 30 96.7 35 .....................G........ GAACCCCGTTCGAGTACGATGAGTCAGTGACGGTC 2104 30 100.0 36 .............................. TCACCAAGCACCGCAATGCCGATTGGCATTCCGTTC 2038 30 100.0 36 .............................. GCGCTGGAGGTGAAGATCGACGAGAGCCAGCAGGGG 1972 30 100.0 36 .............................. AGCGTGAAGAGACGTTCTACCACGCCGAGGGGAGCA 1906 30 100.0 35 .............................. CTCGTCATCGTCCGCAGGCGCTACGGCCTCCACCG 1841 30 100.0 36 .............................. TTCTACACCGACGACGACGCGCCCGCTGGATGGGCG 1775 30 100.0 37 .............................. CACGAACGACGGGGCAAGACGTTCGACCGCAGTCACA 1708 30 100.0 35 .............................. ACTCACGATCAATCTTACTTCGCCCGGGTCCTCGG 1643 30 100.0 35 .............................. TCGTCTTCCGGCTCGTCGGGAGTGTCGTCGGTCTC 1578 30 100.0 35 .............................. CATCGCTCGGCTACCTCGCCGCGACGTTCGCCGCC 1513 30 100.0 36 .............................. ATAGGGTGTATGAACGTGGTATGGAAGCCGCGCCGA 1447 30 100.0 35 .............................. AGGATAATCAAGCTCCGTATGCCACCCACGACACT 1382 30 100.0 35 .............................. ATGGAGCCCAATACGGGTCGATTCCTCGATAATAA 1317 30 96.7 36 .....................G........ CTCTCGTCGAGGACGGGCGGCGACCAGGACGGCGGC 1251 30 100.0 38 .............................. CGACCCGATGGACACGGCGAGAATCTGGTCTCTCCCGA 1183 30 100.0 36 .............................. CCGTTCCACCCCAGCCGAGCCATGCAACGGTTCCGT 1117 30 100.0 37 .............................. TCACCAGCTGCCGGAGCGCGTCGTTGACGTACTGTTT 1050 30 100.0 37 .............................. ACGACATCATTCGCGCCCATCTCGAAAACGCTCAAGC 983 30 100.0 35 .............................. CATGGGGCGATGGTGACGCCCTTCGTGGACTACAC 918 30 100.0 34 .............................. TCCCAGCGCCGGCGCTCATCGGTCACCTCCGCCG 853 30 83.3 4 .......................NC.TTT. AGAC Deletion [820] 828 30 100.0 35 .............................. CTCCCAGCGCCGGCGCTCATCGGTCACCTCCGCCG 763 30 100.0 36 .............................. TTCACGGCGGAATGTTCGGATATCAGGAATGCACTC 697 30 100.0 35 .............................. TTTGATGGAAGCCAGACGTGGCCCAGAACCAGTGG 632 30 100.0 36 .............................. GCGATTCGGTCTCGTTCGACATCACCGTCGAGCACC 566 30 100.0 34 .............................. GTTTCGCCAGCTAATCGTCCGGGTCGGCTTCCCG 502 30 100.0 33 .............................. TCTTGGCTCAAGTCGTCGACGGTTTCAACACCC 439 30 100.0 0 .............................. - Deletion [410] 409 27 86.7 33 ---N.......................... TCTTGGCTCAAGTCGTCGACGGTTTCAACACCC 349 30 100.0 33 .............................. TTCTCACCGACGTTTCTCGACCCTCGAGCGACA 286 30 100.0 37 .............................. GCGAGTAGAGTTCCACACCGTACGAGAACATTGACTT 219 30 100.0 37 .............................. GACGTCGCGCCGGCGGAGGGCGACCGCCGTGTATCGG 152 30 100.0 34 .............................. ACGGACCCGACGCCGCCGCTGGCTGCGAAGGCGT 88 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================ ================== 70 30 99.4 35 GTTTCAGACGAACCAAGCTGGTGTTGAAGC # Left flank : TGTGATTTTTGGCTCATGTCCGTCGACAATACAAGAGAAATGGTTGAGCGAATTTCGTGGTTCTCTCCCGTTGACTACGAGATACTGATGTTCTACGACGAGCACGACGTCGGAGTGACGGCGAAATCGCTTGCCTACAACATCGACTACAACCGAAAGTACGTCAACCAGCGCGTTCGCGTACTCGAGGACGCCGGCTTCTTCACCAACACGAACGGAATCTACGAACTCACGGACTTCGGTCGCGACTTCCTCGCTGGAAGGGTTGACGCCGACGACGTTGAGGCGCTCGGCGACGACTGATTCTGTTGGTGTAGCTGTGAGCACGGCATGCTAACTGAGGCCGGTTGGTTAGAAAGGGATGATTGGGTGGTGTCCGGATTGGCCGATACTGCAGCATCTTCCATCGACCTACTTAAACAAACCCGCTACTGAAGGTCGATGGAAACTAGCGCCTGTAAACAACAGTTATGGGCTTTGAGAGTAGAATTTTGACCGGG # Right flank : CTCATTCAGAACCACCGGCCCGACGCGCTCTCCCGAGGGTTTCAGACGAACCAAGCTGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCAAGCTGGTGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 58-2721 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLJ01000009.1 Haloferax gibbonsii ATCC 33959 contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 58 30 100.0 36 .............................. CTTCGGCACGTCCCGATACTCGATGCACGTCAGCAA 124 30 100.0 33 .............................. TAGAGGTGAGTTCGTCGGGCATATAGTAGCCCT 187 30 100.0 37 .............................. AGGAGTACCGACCAAAAGCATTGGCTTCGAAAAGGGT 254 30 100.0 37 .............................. AAGTCGCCGCGGTGTTCGGACTTGACGGTGTAGAACA 321 30 100.0 36 .............................. ACTCCGGGACCACCATTCTGACCAAACGGTAGTCGA 387 30 100.0 37 .............................. CACTCACGTCGCACCTGCGTCTCGTAGTCTTCAAACC 454 30 100.0 35 .............................. CGTCCCGCACCGGGTTGCAATCGCTCTTCAGGACG 519 30 100.0 35 .............................. TTCAACGGCGTCTTCGAGGACAACCCGGAGATACT 584 30 100.0 35 .............................. GCTTGTCGCCGTCCTTCGCAAAGTGCGTGTAAATC 649 30 100.0 34 .............................. TGGAGTTCGGGCTGGAACGTCCCACTGTCAACTC 713 30 100.0 37 .............................. GACGTGGGCTTCGGGGATGACCCGACCGCCGCATTGG 780 30 100.0 38 .............................. GGGCTTTCGCCGCGGTCATGAGCGCCCGCGATGCGCCC 848 30 100.0 35 .............................. GTTTCCGGGGCGTTTTGTCTGGATTGTGAGGAAAG 913 30 100.0 38 .............................. CGGCCACCCCACGACGGACGACACGCCGTGTCAGAACC 981 30 100.0 37 .............................. AAGAACTGGAAATCATCGGTGAAGTGACGACCCGGTA 1048 30 100.0 35 .............................. CCAAATTATCAAGTCAGTTCCGGCGACGCGGTGTA 1113 30 100.0 35 .............................. GACATGCAGTCGACGACCGTCTCGCCGAACTTGAA 1178 30 100.0 34 .............................. GGCTCCGGATGCGTGAGCCCAAGGCACTCCGGTG 1242 30 100.0 36 .............................. TGCCATCACCCTCCACGGACGATAAATGTCGTCGTT 1308 30 100.0 35 .............................. CGGGGCTATATCCTCATCCGGATCTCGAGTCCAAT 1373 30 100.0 39 .............................. GCGCTGACGCGAGGGTCACATATCAAGCATGGCAGCGGA 1442 30 100.0 37 .............................. ACTAAGAGTCCATGTTGGCCGATACCGGCCACTCTAT 1509 30 100.0 35 .............................. GAGGTCGCCTCTGCCTGCTTGCTATCTGGACTATC 1574 30 100.0 36 .............................. GGGTGGTCGAGTGGGTTAGAACCCGGACCAGAGCGA 1640 30 100.0 36 .............................. CACGTTCTTGCGAATCGGCGGCAAGTCCACCGACTC 1706 30 100.0 35 .............................. CGCCTTTCGTCTGTGAGAACCCGAGTCGCTTCATC 1771 30 100.0 37 .............................. CGGGATATCCGATGAGGTGGCCCTAATGGGACTTATC 1838 30 100.0 37 .............................. CGTGACGATGTCGTAGTTGAACAGTTCGATGAGGCCC 1905 30 100.0 36 .............................. GGTTTACACTTCCCTCCGAGCGGATGTATGCCTCCG 1971 30 100.0 35 .............................. CCGCGGTCGCCTCGAACTCGTGGTCACAACCGTTG 2036 30 100.0 34 .............................. TATCGCGGAGTGACGACCGACTGACGGAGAGTGT 2100 30 100.0 37 .............................. GTTATTTCGTTCCCGTCGTGGAACGTATTGAGTTGGC 2167 30 100.0 35 .............................. TCCGCGCTTTTTCTCAGACTCGTTAGCCACGCGAA 2232 30 100.0 35 .............................. CAGTCCAAAAGGGAGCGACATGGTTAGTTACCTCA 2297 30 96.7 37 ........C..................... CAGGACACGGTCGGAGACCTCGATGTCACCGTCCGAC 2364 30 100.0 37 .............................. GGTCGACCCCGTCCCCGACGACCGCCAAGAGGTGCCG 2431 30 100.0 35 .............................. GTGACGTCTGATGGGATGTTAGCGGGCGAGACTGA 2496 30 100.0 35 .............................. AAGTGCGAAGAAACTATCTGACGACCACATCTATC 2561 30 100.0 35 .............................. TTTCTCAGACTCGTTAGTCCCCCGAACAGTCCACT 2626 30 100.0 36 .............................. TCGGTCTCCAGAGGAGACGTGTCCCTGATGACCCGT 2692 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 41 30 99.9 36 GCTTCAACACCAGCTTGGTACGTCTGAAAC # Left flank : CCAGCTTGGTACGTCTGAAACGACGTCTTCGGGGTCTGCCTCCTCAAGTCGTGCGGCG # Right flank : CCCCGGTCGAAATTCCCCCCTCAAGGCTCATAACTGTTGTTTACAAGGACTAGTTTCCATCGACCCTCAGTAGCGGGTTCGTTTAAGTAGGTTGATGGTCAGATGAGCCGATGGTCATCCATTGGGTCAGAGCCATAGATTTTCCGATTCAACCAGTTGTCGTCTCGTAGTTGGTACAGAATCACAGATTCGTTCGGCTTAACTGTCTCTTCAATTTCTTCGGTTAAAACCGCATACTGCGCATCAGTCAATTCACCTTCACAAACAGAATTTTGCACGTGTGTGAGATATCGTCGAAGCAGAGAGAGCATCAGCTGAGTTCGCTCTGCTTCCATATCATATACTGCAATGACGTACATTACCACCACCTTTTGAACGGCTCATACTCTTTGTCACCAATCACGTGTTTATGTAATTTGTACGCCTCTAAGCGCAACAGATACTGATACGAAACGTGGCGTTTCAGCGTTGGATGCTCAACGGTACGCTCTAAAGTTTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACACCAGCTTGGTACGTCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 3031-2607 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOLJ01000010.1 Haloferax gibbonsii ATCC 33959 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3030 30 100.0 36 .............................. TATGGAAGCTACGAACCCTTGCATCAGGTCTAACAT 2964 30 100.0 35 .............................. TGCGCCCTCTTTGGTGTCGAGGAGTTCCTGGGCCT 2899 30 100.0 36 .............................. CAGCTAATCGCATCGCCGCGATATCAGCAATTCATG 2833 30 100.0 36 .............................. ACCGGAGATTCGAGACGGCGAACATGCCTGGCGCGA 2767 30 100.0 36 .............................. CGCGTAGTCAGATGGGTCTTCGCGGGCTCCGACACG 2701 30 93.3 34 ................A...........C. GCTCGCCACTCGACCGGAGTGCATGAAGAAGTTC G [2675] 2636 30 80.0 0 ................A.A.A.AC....T. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 96.2 36 GTTTCAGACGAACCAAGCTGGTGTTGAAGC # Left flank : GTTGAAGCTTCGGCGTCGAGAGAGTCCGAGGCTGATGAGG # Right flank : GACATCGAGCCGCCAGTATCGACTTGACACCTTGCCTCGAGTTCACGGCCATTTTTCACCTACCAAAACTTTATGCTTAGTTGCCACGATTTTCCTGTGAAATATGAAATGAGAACACTCGTCAAACTACGCGCAGAGAGGGATTTTGCGTACGACAATACATACAATCACAAGTTACAGGGACGGTTGTACAACGACCTCCGTGACAACGGATACGGGGCAGTCCTCGACGAGGGGCCGAAGACGTTCAGTTATTCGAACATTTTTCCCCCTCGGGATGCCGAAGCAGGCGACTCCCGAAGTCTCATCTTCGCAGCATCGGACCAAGATCTGGTGACGTCGGTCGCCTATGGACTCTGTTCTGAGCCGGAGGTGAATATCGGGGAGATGCCCCTCCGAGCGGAAGAGGCGTTTACACTCGACCCGAAAGTTGGTGAATCCGGGTCGCTCACCACAGGGACCCCAATCATCATTCGATTCGGGACTGAGACCGCCGCAGA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCAAGCTGGTGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //