Array 1 96018-94101 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUOQ02000022.1 Klebsiella pneumoniae strain AS003081 AS003081-illumina-1_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96017 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 95956 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 95895 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 95834 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 95773 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 95712 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 95651 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 95590 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 95529 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 95468 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 95407 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 95346 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 95285 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 95224 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 95163 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 95102 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 95041 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 94980 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 94919 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 94858 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 94797 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 94736 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 94675 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 94614 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 94553 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 94492 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 94431 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 94370 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 94309 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 94248 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 94187 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 94129 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1677-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUOQ02000030.1 Klebsiella pneumoniae strain AS003081 AS003081-illumina-1_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1676 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 1617 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 1556 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 1495 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 1434 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 1373 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 1312 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 1251 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 1190 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 1129 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 1068 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 1007 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 946 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 885 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 824 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 763 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 702 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 641 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 580 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 519 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 458 29 100.0 10 ............................. ACATAGCGCC Deletion [420] 419 29 55.2 0 CGA.A.G.A...........T.GTGTT.C - Deletion [391] 390 22 75.9 32 -------...................... GATCGATCGTTATTGTTGAACCGCACTATGGT 336 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 275 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 214 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 153 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 92 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 31 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 97.3 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GCC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //