Array 1 559847-551074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009961.1 Infirmifilum uzonense strain 1807-2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 559846 25 100.0 40 ......................... CATTCAGCATCGTTCATCACGAAAATCCTGTCGACGTCGG 559781 25 100.0 38 ......................... AGTTCGTGACTATGTTCAGGAGTACGACGGAGGGTTAC 559718 25 100.0 40 ......................... GGCATCAACTGGATGATACCCCACGTGCTCCACCACGTGT 559653 25 100.0 37 ......................... ACGGGTCTGTCGTGATTCCCGGTGTTTCACCCTCCAG 559591 25 100.0 40 ......................... ACAGGAGATTAGGGGTTCAACATATTGGCTTTTGGATTGG 559526 25 100.0 40 ......................... GTACAGTAACGCTAGGAATCTTAAACACAGCACTGTGTGG 559461 25 100.0 39 ......................... TCCACTGGAATGTTTTGCCTACAGCTTCACTTAGTCTCT 559397 25 100.0 39 ......................... ACTATTCTGACTGGCAAAGGTCTCGGAAAGCCGATTTGG 559333 25 100.0 39 ......................... GATGTGACAGCATCCCACTCAAATGTTGACATCTAGCTA 559269 25 100.0 41 ......................... CCCTCGCGTCGGAACGGCACTATGAAGTGCACGTTCTTATT 559203 25 100.0 37 ......................... CCGCCACCACGAGTGCAGGGACTCCTGCAAACATCAC 559141 25 100.0 39 ......................... ATAATGAAGTTTCATTATAAACTCATTATGAGGTATTAC 559077 25 100.0 35 ......................... CGTGTTCCACAGCTGTGATCATAATTTTTACAAGG 559017 25 100.0 43 ......................... TTGCGGAAAGCAGACTTCGCCAAGCCGAGGCGGAAATACGTAT 558949 25 100.0 42 ......................... CTAGTAGCATAAGTGTAGATTGTCTCGACAGCCCTTCCCTCC 558882 25 100.0 38 ......................... AAAAGGTGATTTGAGTTGTCAAGTAACAAGGTTAAGGT 558819 25 100.0 43 ......................... TATGCATATAACCTTGATATATATGACCCTAACAACAATATAA 558751 25 100.0 39 ......................... CACCGAGCCCGGAGGGGATGACCGTGAAAATGCTTCCCT 558687 25 100.0 38 ......................... TCAAGTGTGACAGTTCTGTCACCCCCCGGCTCAACACT 558624 25 100.0 38 ......................... CCTGATAGAAGGCTCTGGAGGACGTTCACGGCGTCCTT 558561 25 100.0 38 ......................... GTCAAGTCCCAGCACTTGCGACGCGACCTGTATTGCCT 558498 25 100.0 39 ......................... TAAAGGAGAGAAACGCTACAAGAACAAAAAATAAAATTA 558434 25 100.0 42 ......................... ATTATTATCAGCCGTGTCCGGTCTGCCAGGCCCGACTCGACC 558367 25 100.0 40 ......................... AAGTCTACCTTGAAGACGACTTTGAAGACAACTTCCTCGG 558302 25 100.0 38 ......................... GTAACCGAGAAGGCGTTGAAGCTAGCGAGTAGTATGCG 558239 25 100.0 39 ......................... CCTGTCGCGCTCTTGAACACGTAGCCCCGTGGAGCCCTA 558175 25 100.0 42 ......................... GTGACACCCTAGACAGGTACTAATCCCCTTGGGCACACCTGT 558108 25 100.0 39 ......................... AATACTGACACGGGTTTCCTTACGAGTTTCACAACACAG 558044 25 100.0 40 ......................... CGTGTGGTTAAATACATCCTCCCAGTCAGGCTCTTCGGCG 557979 25 100.0 37 ......................... AGCTCTGAGCATGTCGCATCAATGTCCCTGTTTACAT 557917 25 100.0 36 ......................... CCGAACCCGACACCGGCACGCGTCGAAAACACGAGA 557856 25 100.0 38 ......................... ATCATTACACTGCTTTTTTCCAAGCTCCTACAAAAGGC 557793 25 100.0 41 ......................... ATTTTGCGGTATTGAATTCAAGAGCACAGATGAATTGAGAG 557727 25 100.0 38 ......................... TGAAAGAGTTGTAATAATACGTAAAGCATCTGATTATA 557664 25 100.0 40 ......................... TATGATATACAAGTATCAACCACACAACCACAACCACCAC 557599 25 100.0 39 ......................... GTGTTAGCAATTATAAAGCTATTACGGCGGTTAGGGCTT 557535 25 100.0 39 ......................... GGATGGATGACCCCCCGACTCCTGATTTTAAATGCCCGT 557471 25 100.0 38 ......................... ATGAGGGAGTGGGAGTCTGGCAAGCGGGAAAAACTCCG 557408 25 100.0 34 ......................... TCCTACTGATGTCGCAAAAGAAGGTAGCATACTA 557349 25 100.0 40 ......................... TACTGGTGTGACAGAACTGTCATACGAGGGTATAGTAGGT 557284 25 100.0 36 ......................... TCTGTCAAGACCCTGGTTTGCGAAAGCCTCGATTAT 557223 25 100.0 39 ......................... AGATTTTGCTAGCTATATAGTTTTTTCCCTTAGCTATAT 557159 25 100.0 39 ......................... ATGTCTGGGCCGAAATAGTAATGTTCATACCATTCTTAC 557095 25 100.0 35 ......................... GGGACGAGTGGCTTCCTGGGAGCCTGGTCACGGAC 557035 25 100.0 36 ......................... GAGCGCGAGGTAACGGATGCCGCCGGCCGAGTATGG 556974 25 100.0 38 ......................... ATCCGCAAACATAACCGTCTTCTCGGGTATGACGCGGG 556911 25 100.0 39 ......................... CCTGCAATATTACTGTAATGGTGTATGTGACTGAAAAAG 556847 25 100.0 40 ......................... ACGAGTTGAAAGAGAGGTTGTAATCACAGCTGTGGTGTAC 556782 25 100.0 38 ......................... GCCACGTTCCTGGACTCTGCGGGCAACACGCTCTATGC 556719 25 100.0 34 ......................... CTGAAGTCCACTCCTGGTCACCTCTCGGTCTTCA 556660 25 100.0 41 ......................... TTGAGATTTGTGAAATCACGACAGGAACTTGAACAGATTCT 556594 25 100.0 33 ......................... CGTTCACCCCACTCGTAGCCACCTGGTATATAT 556536 25 100.0 33 ......................... TACATGCCCAAAGGCCAGCCCGCGTTTTTTATT 556478 25 100.0 37 ......................... AGATGAAAAAAGAAATAAAAAATGCAATAAAAATGCT 556416 25 100.0 40 ......................... GGGGCGTCATCCCTGCTAGCCATCTTCACCCATAGCTCCG 556351 25 100.0 38 ......................... TGGCTAGCCAAGTTGTGGATGTGAGAACTAAGAAGCTT 556288 25 100.0 40 ......................... CGCTCATCACTTGATTCCTCCCCCTCCTCCCCACCCTCCT 556223 25 100.0 37 ......................... ACAGCTCAGGTAATCTGGTGCACGTACAGCCTATAGT 556161 25 100.0 39 ......................... TACAACTATGACACGCGCCATAAAAACCCCCTACCCAGG 556097 25 100.0 39 ......................... AGCAACTCGAGCAACCCCTCACCACAGCTAGCCAGTGGG 556033 25 100.0 40 ......................... GGCATGCTGGGGACTCGTGGCTCGTTGAACCACTTGACAT 555968 25 100.0 39 ......................... TAATTACACTTAGCCTTTCCAGGAATGCGGAGAACGTCT 555904 25 100.0 39 ......................... AGAGGAGAGAGGAGTGCTTTGAGTTCGTTGAAGTCCCGA 555840 25 100.0 40 ......................... GTCACACCAGGACGTCAAGCCCGGAGAAAAAACCGAATAA 555775 25 100.0 34 ......................... CGGTTGAGAAGGTGTTGAACAGTGTGGTCGTGGG 555716 25 100.0 38 ......................... CATCGGCCCTCACAGCAGAGAGCAAGCAGGAGGCGTTG 555653 25 100.0 33 ......................... AGATACTTTAATTTCCTAAGCCATTGTAAGTAC 555595 25 100.0 39 ......................... CTTGGCTTTAGGTCCCGCTAGGTCCCGCGGGACCTTTTT 555531 25 100.0 39 ......................... TGATGTCTTCGGGCCTTTCGAGACGTTTCTTCAAACGTA 555467 25 100.0 35 ......................... TTATACTTGTAAAACGCGAAGTCGCCCTCCCTCCT 555407 25 100.0 39 ......................... GTCTATGACAATGGTGTTTTCAAACGAAATGCTTACGCT 555343 25 100.0 37 ......................... CCGTCACGCTAAGCCTAATACTCTACATCATCTACAT 555281 25 100.0 35 ......................... ATGACTAGTATCACCCCTTCACAGGTGCCGGTTGT 555221 25 100.0 37 ......................... TGGAATTTAAGCGGTGAGGATACGCCATTTTCAAGAA 555159 25 100.0 37 ......................... GGTTGTAGGCAACAGGGTGCTTGAAGCCCCGCAACAG 555097 25 100.0 40 ......................... TAGGCTCGGCCGGCAACGGAAGCCTGGGCGTCGACGGCTG 555032 25 100.0 39 ......................... AATCCACCTGCAGGGTTTTTCCCGCTTGCCCGACTCTCA 554968 25 100.0 37 ......................... AGATAGAGGAAAAACCCGGGCTAGAGAAAAACCCCTT 554906 25 100.0 40 ......................... TCATACGGAGGCACATTCATAGCTATACGTACACTAATAA 554841 25 100.0 39 ......................... CATTAGAGAAGAACTTTTGAATCAAGGACATCACGACGC 554777 25 100.0 38 ......................... CGGAAAACCTGGACATAAGCACGTATGGCAACGTCGCA 554714 25 100.0 39 ......................... TAAAAAAATCAAATATGAAGGACAGGGCATGATTACTAA 554650 25 100.0 36 ......................... CTCGTTTTCCTGAATACTTCATCGCCACATCTATTC 554589 25 100.0 40 ......................... AGATGAACCAAAAAAACATACAGAAAATAGCTTGGAAAAT 554524 25 100.0 36 ......................... TGAACAAACATGACAGAAACAGAGCTACAAATAAAG 554463 25 100.0 41 ......................... AACAGGAGAGTGTTGGCGGCACAATCTGCCGCCACGTTTGC 554397 25 100.0 37 ......................... CAGCTGTGGAACACGAGACAGTCAAGCCCCTAGAAGT 554335 25 100.0 38 ......................... AGTCCGTGGTCTAGGCTTACGAAATCCACGAGCTTCCA 554272 25 100.0 38 ......................... AAATCTCGCTCTGTCGCAAACTCAAGGCTTGCCTGGAT 554209 25 100.0 37 ......................... CTGAGCTTCCCAGCAAGCTGACTTGCAGTATTTACGA 554147 25 100.0 39 ......................... TAGACGTCTCGCTTCTTCTTGTGCTGCGATACGTACTTG 554083 25 100.0 39 ......................... CTGTTATTCCTCCCATTTCACCAATGGAATCTTGTCCTT 554019 25 100.0 36 ......................... CACGCGATAACGGCTTGCATCCTGTCAAATCGATTA 553958 25 100.0 45 ......................... TTAATTCTTGTAATTGGTTCTTGTTTCTTAATGCTAAAGCTACCA 553888 25 100.0 48 ......................... CTAGAATCTTGTACTCTTTGTATTCCTTTCCGCAAATCGGACACTTAT 553815 25 100.0 38 ......................... ACGTCTATTGAATCCCCACACGCGTCCTAGACCGTCCA 553752 25 100.0 39 ......................... AGCTAGCCTACGCAGAGTAGCACGTGCACGTTCTTGCTC 553688 25 100.0 38 ......................... GGGGATTCCGGTCTGGCAATTTTGTTAGCGTGGGGGTT 553625 25 100.0 37 ......................... TGACAACCCGTCCCGGCTCGGTCATCCACGTCACCTC 553563 25 100.0 40 ......................... GTATCAAACAAATAGATTGCAGCGTCGAGCCGTTTGTATA 553498 25 100.0 38 ......................... GTCCGCCCGGCACTGTTCCCGACAACACGTTGTCGGAG 553435 25 100.0 40 ......................... CATAGAACGGCTGTGGCTGAAGCGAAGCCTCGCCGCTCAG 553370 25 100.0 40 ......................... AGCTGAAGGGGAGGAAGAGTAGGAGTGCCGGGGTAACTGG 553305 25 100.0 34 ......................... CTATCGCTTGCATTTTTATCAGGTTATTGTATGC 553246 25 100.0 38 ......................... CGGATAACGCTTCTCCAGTCCACTTTGGGACGTCGCAG 553183 25 100.0 39 ......................... GGGTCAACTATAGCTACATATACAGTGCGGTTTGGGTAT 553119 25 100.0 32 ......................... TTAACGTTAACTGATATATTTGTAGGTGAACC 553062 25 100.0 39 ......................... TCTTCACCCCAACCAGTATACATTGATATACCCTGATTG 552998 25 100.0 36 ......................... GTCAGGCAAACAGTTTACGTTGAAGGCGTTAGCGTT 552937 25 100.0 38 ......................... GTGCATAGCAATAGCCCACGCGAGCCCTACCCGTAGCT 552874 25 100.0 38 ......................... ATAGTTGTAGCTCAACAGGAGAGAGACAGTGGGGGTTT 552811 25 100.0 35 ......................... CATTCACGTATTTTCGTATTGCACTGATGATGCGT 552751 25 100.0 36 ......................... ATTTGGGTTTACCGTTATTGCAATTTCATAGCCGTT 552690 25 100.0 39 ......................... TCTATTTGTTCGCGGGGCAGTGGCTTTGCCCCTGTTAAA 552626 25 96.0 34 ..........A.............. TTTTTTGTATACTATATACATTTTTGCATATATC 552567 25 100.0 36 ......................... TGAGACGTGGGGGGGTGGAGGCTACAGATCTGTCAT 552506 25 100.0 40 ......................... AAAAGATACATTGGGGAACATTCAGTGGAGCTACGACCTC 552441 25 100.0 42 ......................... CATGAGCTATGTATGTTCTCTAGAAGACTATATAGCGTTAAA 552374 25 100.0 39 ......................... GATATGGGTTTTCCAAACTTACCTACGATTAAGGGTAAG 552310 25 100.0 40 ......................... TTATTCTATCGAGTTTTCAACAACAGTTTAAGCGTTAAGT 552245 25 100.0 39 ......................... CCCACGGTCGCGGCAGCCACAGCTCCCCACAGGTGGCGT 552181 25 100.0 39 ......................... AGAGTTCATGGCATTAAAGACCCGGATGGGTTTCTTAGT 552117 25 100.0 39 ......................... GCGGTGACATGTGCATGTTAGAATTGTATGAAAAGTCTA 552053 25 100.0 39 ......................... TCGGCGGTGAAGAGGTCGTCAACGGGCTTGAGGCTTTAG 551989 25 100.0 39 ......................... CGTTTTCTCGTATCCTAGGGAGGATCCGGTAAGGAGCTT 551925 25 100.0 38 ......................... TCCTTTGTCCAAAATTCGTACTCTTTTCGGTTGCTCTT 551862 25 100.0 41 ......................... AGGAAGAATAAGGGGCTTGACATCGAGTGGAGGGAGAAGTA 551796 25 100.0 34 ......................... CTCGGGATCGGAGTAGCGAATGGAGCATAGAACC 551737 25 100.0 38 ......................... TTCAACCGATACGCATCAACAACAACACGAAGGCCCCC 551674 25 100.0 40 ......................... GTATCAAACAAATAGATTGCAGCGTCGAGCCGTTTGTATA 551609 25 100.0 38 ......................... GTCCGCCCGGCACTGTTCCCGACAACACGTTGTCGGAG 551546 25 100.0 36 ......................... TCATTATAAGCGTAGCCGTCATAATAATGGTAGCGT 551485 25 100.0 40 ......................... GTTTCCACGTAGTAGCGGATTGAAGCACCTGATGTAGCAC 551420 25 100.0 39 ......................... ATATAGTTTTCCGGGGCGTCTATATAGTTCGACAGTTGT 551356 25 100.0 38 ......................... CCGAGGTCGTGAAAACAGAAAATTTTGCCAGACTGAAC 551293 25 100.0 39 ......................... AGGAGGATAAGAGCGAGTTCAACAATCGCGACTACACGG 551229 25 100.0 40 ......................... TTCACAAAGAAAATATGGTTTCCTAGTCTATATCCCTTAT 551164 25 100.0 41 ......................... GTGCTTGAATCTGTAAAGCTTTGTGTCACCGTGTATGGTTG 551098 25 72.0 0 ............C.G....AACT.T | ========== ====== ====== ====== ========================= ================================================ ================== 139 25 99.8 38 GTATCAGAAAGGAATGAATTGAAAG # Left flank : TAGCCGTCGACAGGCCCCTAATCAGGCTCGCCCGCTCAGACCCCTCCAGGCTTGAGCCTTTAACTCACGAGGCTGGCGAGGCCAAGGACAAGGCAGCCCGCGAAGTTTGGAGACACATAGCCGAGTACGCGCGAACCACCAAGCCACCCATTCCAAACCTCATCCTCATACAGGCTAGGAAGCTAGCCCGAGCACTCCGCGACAACGCCCCCTACATGCCCTTCAAGGCTAAATGGTAACACTGAGATACTGTGTGAGAGGAAAATAATCCCTAAAAAAGCAAGCCCGTAGACACTTCCTCTCCTATAGATCGCAAAACCCGGGAGGAAAAAACACAAACCCGGCTTTCCACCTGGGCTTTTCTACCCATACATAATCACAAGTCTATATCAAATAAAACAGAATCATTATCAAAAAACATAGAAAAAACCTGGAAAAAATACCACATACATTTAAACAAATAATAAATACAACCCCCACAATACAAAAAACAAGAAGCG # Right flank : CATGCGAGATAGGAAAGAAGTAGTCTTTTTAAAATATTTAATGAAATGAAGCTAGCAGCTATTAAAATCTTTCATGAGGTAAAGTGGATTTAGATCCTTCAGGAAAAAAATGCTGTTCCTTAGCCTACTAATGTCTCTATCCCCAGATTCTCAGCAACGCTTTTCTGCCTTTTGTCCAGAGTTGCCAGTTTTCCACCTAATTTCATTGAGAGGGCTATGTAGAGCGCGTCGTACACGGTGATCCCTTCCTTTATCGATACCTCAAATGCTTTATCGAGCACCTCCAGCTCATTGTAGAGGATTACGTTCACATCAATGAGCTTTCTCATGGCTTGAAACTTCGCTTTTGCATCCTCCTCCGAAATAAAATCTCTCCTAAAGGATTTCCAGATGGCATTTGAGACCTCCTTAGCGACATGATCAACAGTGCAGCAGTTCTTTATGATGTCTGCATACTTTTCCCACTCAGGCTCCCTCAGGATGAAAGCAGTTATAACAGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAAGGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 569862-574511 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009961.1 Infirmifilum uzonense strain 1807-2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 569862 25 100.0 36 ......................... GAGGAATAACTCATGCAGTGCAACCTGCACCGGTGA 569923 25 100.0 36 ......................... TCCGCGAGCGTTCCCGTTGAGTCGGGGGGTGACAGA 569984 25 100.0 38 ......................... TTACACCGCGATAAGTAAGACAACAGACTTTAGCACGT 570047 25 100.0 36 ......................... TTGACTACGCTCGCTTTATCGTATTCAGTCCACATG 570108 25 100.0 42 ......................... CATTACCCGCTCTATACGCCTTTGGTGCTAGGTATATGGCTT 570175 25 100.0 38 ......................... AAGCGATGAGAGGTTGCCCGCGCTACGGTAGCCCGCCT 570238 25 100.0 38 ......................... TCACTCTCGATGAGTTTGCAGAGACGGCAAAGTACCAC 570301 25 100.0 39 ......................... TTCCGGTCTCCAATGTACTCGGGCCGTATGGTTCTTCAC 570365 25 100.0 39 ......................... TCCTATACATCATCTACATGGTATCGGGAAGACTAATCA 570429 25 100.0 39 ......................... TCAATGGGAATAGTCTGAGGCTGTGAAGCGGGCTCCTCG 570493 25 100.0 33 ......................... TCAATTTCGCCTCAACCACCATAAACATGTCGT 570551 25 100.0 40 ......................... ACGAGTAACAGTCTTGTACGACAGGACGCCCGGGAGCCCG 570616 25 100.0 38 ......................... CTTCTTTTCGCCACGGGTACTCCCCCCTTTTAATACGT 570679 25 100.0 39 ......................... CTCCCTGCTTGAGCCGGAACTGCTCGGGCAAGCCCTCGG 570743 25 100.0 39 ......................... TACTCTCCAAGGAGATACCTGAGGCATTAGAGCTGATAC 570807 25 100.0 38 ......................... CATATCAATTCAAATATCAATGACTGTAGGTCAAGTCT 570870 25 100.0 39 ......................... TCGAGCCTGATTGGTTGTTTTGGGTGTATATCACAGCTG 570934 25 100.0 39 ......................... TAATCCTCTTTTCTAATTCTCAATCCTTTATACTCGGGT 570998 25 100.0 41 ......................... TTATTTTTTCCTATTGGAGAACACATATAGCTATAGCATAT 571064 25 100.0 39 ......................... TGTATAAGTTGTTCTTGCGTCTCATCTGTGGTTCTCAAT 571128 25 100.0 37 ......................... CTTTCCTTGAAAAACCTGACGAGTTCAGGAAGCGGGT 571190 25 100.0 37 ......................... TATCGTGTTGCAAGATGAGTAATATTCCGCTACTCGT 571252 25 100.0 39 ......................... TGGCGAAAAAGCCATGGCAAGAAAAAAGCAAAAGGAAAA 571316 25 100.0 37 ......................... TTTTCACCAAACCTAAAACCGTCAAAGGGGCTTATAA 571378 25 100.0 40 ......................... AACGATGGTACGAACTGGGATTACACTGGTGCTAGTGCTA 571443 25 100.0 39 ......................... CTGCTATTTTCTCATGTTGTTCTTTTTCTAACATCTCTT 571507 25 100.0 39 ......................... AGAAAGATCACGGGGCGCACCGTTGCGCTCCGCTGCCAC 571571 25 100.0 39 ......................... AAAATTTTCCATCCATAGTATGTTGCGTCCTCGCTTTTT 571635 25 100.0 39 ......................... GGTATTGTAGCTTCGCTGCTATGGATTCAATCGCGACGC 571699 25 100.0 39 ......................... TTATTTTATCTAGAGCGGAAAACTATACCTCTATACCCC 571763 25 100.0 34 ......................... ACACTGGGAGAACTACCTTGAGCGTGCCCTGAGT 571822 25 100.0 40 ......................... TAAAGATAATTATGTAATTTTCACCGTCATAATCAAAACT 571887 25 100.0 37 ......................... AGAGCAATGTGCGCCGCCTCATGAGCGAGAACTCCGA 571949 25 100.0 36 ......................... CGGAATTATAGACTTCAATTGCTACTATTGCAAATT 572010 25 100.0 40 ......................... CACTTTGTGACAGTCCTGTAGTCTTTTCACCCGTTATTAA 572075 25 100.0 40 ......................... CGGATATAGCATGGAGCCCCTACATGACCCGCAGGCCCCT 572140 25 100.0 38 ......................... ATAATTTGCCCTTTTTACTAGTTTTATTTCCGTCATGG 572203 25 100.0 38 ......................... ACGGGAACGCTTGACAGGTCCTCCTCCCTGGTCCTCCA 572266 25 100.0 40 ......................... TTTGTTGTCATGCTTGTTCATGATATTGTATGCAAAATGG 572331 25 100.0 39 ......................... AGGTCTCCGGCAAGTGCGACTGGGAGGAAGGCCTTCACG 572395 25 100.0 37 ......................... TGATCCACGTGAGAGTATCGCACCCGACGCCGTAGTT 572457 25 100.0 34 ......................... CAGCGTGAGAGGTAAACGTCATTGTACTCGTCGA 572516 25 100.0 39 ......................... TTAATGCCATGCACTTTAGCCAAATGCCTTGTTAGGACT 572580 25 100.0 39 ......................... AGGGGTCGCAGATACATTTTAAGTTACGGAGTTTTTTAC 572644 25 100.0 38 ......................... TCGTACTTCGGCGTATACATGGCCCTGTTCGCGGGTAT 572707 25 100.0 40 ......................... ACGCCCTTAAAAACCCGTTAAAAAATCTTCAACCCCCTAT 572772 25 100.0 36 ......................... AGAGCGACGGCACGGTACAACCCCTGGAGTCAATAC 572833 25 100.0 39 ......................... AGATTTTGCTAGCTATATAGTTTTTTCCCTTAGCTATAT 572897 25 100.0 36 ......................... CGAACAAGCCGGCCACGAGCAGGAAGACGTCTATGG 572958 25 100.0 38 ......................... CGTTGACGTGGATATTGACGCTGACTTGATTAAGTCAC 573021 25 100.0 38 ......................... TTCATCCGTTGTGTACGCTGTATATCTCCAGTATCCAA 573084 25 100.0 38 ......................... AGAAATCCCTTGGAGAGGCCTACCCGCACGTCAAAATC 573147 25 100.0 39 ......................... ACATTCGCAATAACGTATTCATAGTCGAGGCTGGGACGG 573211 25 100.0 39 ......................... AATAGCCACCGAGTGCTGGGCTAGGCGTGGCAGGTTCAA 573275 25 100.0 39 ......................... CACAGAGGAGGCTTTGATAATACAAAACCGTAATACTTT 573339 25 100.0 38 ......................... CTAATGAGAAACATATGTTATTAGCTATAGCATATTAG 573402 25 100.0 40 ......................... ATAGTAATCTCTCATTCACTTCATGACAAACACGTTTTTG 573467 25 100.0 40 ......................... GCACCTTCTCGTTTAACAGTTCGACGATTGTCTTACGCGC 573532 25 100.0 40 ......................... TTCCTCCCAGTGGTGATGCCCACTGGCTAGCCGTCGTGAA 573597 25 100.0 40 ......................... TCCGGCTCCGGTTCCGCCTCCGGAGCCAGGGAAAGGAGCT 573662 25 100.0 39 ......................... CGATAACGTATTCATATACTGCTTCTTCTACACTATCAG 573726 25 100.0 40 ......................... CGTTCTTCCCAGCTGTAGGGTGGTTCCGGCTCCCATAATT 573791 25 100.0 39 ......................... CGAATAACTCGAAGGCATCCTTGTACTCGTACTTCTTGT 573855 25 100.0 39 ......................... ATGGTCCGAATTCTAGCTGTGGTATTCCATTTTCGTTTT 573919 25 100.0 38 ......................... ACGTGCGAGCACGCGTGCCACGTAGTCGGTTGACGGCG 573982 25 100.0 39 ......................... CAGTTCCTCCTCTTCTTCTCCCTCAATTTTGTTACGAAT 574046 25 100.0 33 ......................... AGGTAAAAATCGAGAAGAGGGAGGTGAAGAAGT 574104 25 100.0 39 ......................... TTCACTATGAACTGGTGGGGCGGCCTCGGACGTTGTAGG 574168 25 100.0 43 ......................... GTAGCTCTCAGAAATTAAAACAAAGATATCGCGTGGCAGGAAT 574236 25 100.0 38 ......................... AGGACTATGTGTTCTTGTTCAGACGTTTTTGCTTGCAT 574299 25 100.0 35 ......................... GCTCGAGCTGTCTTCTAGCCCATAGGAGGAAGTAG 574359 25 96.0 39 ........G................ TTAGCTAGATCAGCTTTGATGTATACTCCTTTATGCTTT 574423 24 84.0 40 ....T......-....GC....... CGATGTCTACGTGGTGAAGGGGCGGGGGGTACGTCTTTCT 574487 25 72.0 0 ....TG...GT.T...TG....... | ========== ====== ====== ====== ========================= =========================================== ================== 74 25 99.4 38 GTATCAGAAAAGAATGAATTGAAAG # Left flank : ACAGGCGAACGAGTACACCTACCATTAATACCAATACACCTCCTCCTAACACCCAGACAGCTGAAAGTCCTAAGCATGCTCCCCGCAACTCTCACAGAGCTCTCCCAGAAACTCCAGGTTTCAAAGCCCGCCGTATCCCGCCTAATGGCAAGGATGAAGGAGAAAGGACTCGTCACCATGAACAAAAACAGGTACGAGCCCACCCCCTGGGGCAGAATACTCCTATATACACAACACCACCCGGAAGCAGCAAAGGAGGATAGACCACCTATAAACTGAAATCCCCGGGCCACATTCCTCCTCACAAAACAGACATCCTCGAGAGGAAAAAGGCCAAAAACCATCATTTTCCCGGGGTTTTCTTCCTATGTAATATCACGATTATTTCATAATTAAAACAGTGTTATTTCCTGTAAATTCCCACCAAAACCGGATAAAATACAACCATTAAATAGGAAAAAATTAATATTTATCCCCAACCACAAATAGAACTGGAAGCG # Right flank : GGAGTTTTTGCTGTTTCTCTGCTAGGTCGGGTTTAGGGTTATTTTTAGTATTGAGGCGTATCCTGCCCTTAGTAGGGTGAGGTAGGGGTGTGGGAGGTTTTTTGCATCCTTGGTTGTCTTCTTTAAGTGTATTATTGTTCCTGGTGGTAGTGCGGGTATTATGGGTCTTCTGGTTTTTAGTACTTCGCTGTAGCCTAGGCCTAGCCTGACTACTCGTAGCTTTGCTGGCTGGCTGGGGTTGAAGCTGGGTAGGCCGGCTATGTCTTTGGATGGATTGTCGAAGTATTCGAGGCCTACCAGGTCTTTGCTGGGGAGGTAGACTGGTGTGTTTTTCGTGGGTATTAGGGGCCAGAAGCTGGTGATTATGTAGGGGCCTGGTTCGGCTGTTAAGGGGCTTTCCAGGTGGACTTGCTGGTGGTCGCCGGTGACGCGGATTGTGGCTAGTCTTCCCTCTCCCCCGAGCCTCACGGCTGTTTCGAGTGGTGGTATGTCTGGGGTGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGAAAAGAATGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //