Array 1 1152926-1149490 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001486.1 Thermoanaerobacter siderophilus SR4 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1152925 30 100.0 37 .............................. CGTATCCGAACCCGTTGAACGTCTATAAAGGCGTAGG 1152858 30 100.0 38 .............................. CCATCTTGGAGTAAAAAAACGTCTTTGTCGGTTTTCTT 1152790 30 100.0 38 .............................. TTCTTACTCTTATCTCATGTACCTTCATTTATATCTCC 1152722 30 100.0 38 .............................. ATTTCCTTCTTTGATACGACTTTTTTATCGATTTCTGC 1152654 30 100.0 37 .............................. CGGCAAGAGTATCCGTGCTTGCAAGAGCCGTTGCTGA 1152587 30 100.0 36 .............................. ACATGGAGAAAACAGGAAATAAACATTACACAACCT 1152521 30 100.0 37 .............................. TGGCCTTTTATCCAAAACGTTGCAACAGTCAAATAAT 1152454 30 100.0 35 .............................. TAATAAATTAAACCAATACCACCACCAAAGTAAGA 1152389 30 100.0 38 .............................. CCAGTCTGTCATAAATGCCATATGCTTTTGCATAAACA 1152321 30 100.0 36 .............................. TTGCCTTTCTCATAAAGCTCTGTGGCTTTGTCCGCA 1152255 30 100.0 38 .............................. ATGCTCTCTCTAATGCCTGTCTGTATCCTTTCCAATAG 1152187 30 100.0 37 .............................. TATATAGCAGTTTCATAAATTTTTCGAATATAATTAT 1152120 30 100.0 35 .............................. CGTTATTGTAACGCGGTGAAGATAGCTATCGTACC 1152055 30 100.0 36 .............................. AATAAATGTTTACGCATTCTTGACCTTGCTTTAATT 1151989 30 100.0 35 .............................. TTGGCATAAGTGTATTTTCAATTTTATTATACCAC 1151924 30 100.0 38 .............................. ATTCAAGGAAGTTTTACTTTGACTCATTCAACAAAAAC 1151856 30 100.0 36 .............................. TCAAAAAAGAAAATTGCAATTGAAGGTGGTGAAATA 1151790 30 100.0 38 .............................. TTTGTTTTAATAAGTACTTTTGCTATAGCTAAATATCC 1151722 30 100.0 36 .............................. TCAGTTCACCTGTTTTTGCATCTCTCACCTCAATTG 1151656 30 100.0 35 .............................. CGGAAGCGGAAGAGATTACATTGATACTCAAAGAC 1151591 30 100.0 36 .............................. CAAATACAGTATCTTCTACAGGAGCAACAAATAATA 1151525 30 100.0 37 .............................. TAGAAACATACAGAAACCTTGACAAGGAAAGTGGCGA 1151458 30 100.0 36 .............................. AATTCCATTGTGCTGTTATGTCTTGAAACAAAGCAA 1151392 30 100.0 36 .............................. AGAAGCAGTTAAACAAGGATTTATTAACATTGAAAA 1151326 30 100.0 35 .............................. CCGATTGTTGACAACATTTTGTGATACCTCCTTAA 1151261 30 100.0 37 .............................. CACGTACGACAGATATATTTGTGAGCTTACAGCAAAG 1151194 30 100.0 38 .............................. GATATTCTCCTTTTGGTATCGGCACATCAAACCGATCC 1151126 30 100.0 37 .............................. AGTGCATCTGGTCGCTGGGTTTGACTGGATATCCTTT 1151059 30 100.0 38 .............................. TTTTGTTCCTGTTGCTACTATGCTTACTCATTTTGGTT 1150991 30 100.0 37 .............................. CAGAATGGAGACTATTCACGAGAGACAGTCAAGGAAC 1150924 30 100.0 37 .............................. TTGTTTGTACCTGTGCCTTGTATAAATGCTGTATCTT 1150857 30 100.0 34 .............................. CTCTGCATCTCTTTTGAGGCGTCAACACCTATCA 1150793 30 100.0 36 .............................. TAAACAAGACAATAAAGAGTAAAGCGTAAATTGTGA 1150727 30 100.0 37 .............................. ATGAAGCAGGATTGTATAACTTGATTTTGTTAAGCCG 1150660 30 100.0 38 .............................. ACTTCCACGTCTCTTCTCGGATCTTTGAAGCTTGCCAG 1150592 30 100.0 38 .............................. TAACCCTCAAAAAGTTCTTGCCCACAATATGCGCATTT 1150524 30 100.0 36 .............................. AATTCAATGATGGTCTTTTTGATTATTTCGTATTGG 1150458 30 100.0 35 .............................. AACAATTCAGAACAGGGATAACTTTATTGTTTATA 1150393 30 100.0 37 .............................. CACGTACGACAGATATATTTGTGAGCTTACAGCAAAG 1150326 30 100.0 38 .............................. CCTCCCTAAATATTTCAGTACCCTATCCAGTAAAGCTG 1150258 30 100.0 38 .............................. AAGTTTTCATTACTTCTAATGCATCTTTAGATTTTAGT 1150190 30 100.0 36 .............................. ACGACATCCAGTGGTTATAGTAACTTAATTCGCTCA 1150124 30 100.0 36 .............................. TGAAGTAGACGCTGACGGCAATATTGGCCCTGCAAA 1150058 30 100.0 35 .............................. AGTGCTCTTGGGTCAATTATTTCTCTGTATTCAAC 1149993 30 100.0 38 .............................. TGGAAAGAGTGGGCAATGTCCTCTCTTTCCAGTCCTTC 1149925 30 100.0 38 .............................. TGGTCGAATCATAACAATTGTTTCGGTACGGGTACAAC 1149857 30 100.0 37 .............................. CGCCAGCAAATGTGTTACCTTCTCTAACTGTTGAGGG 1149790 30 96.7 36 T............................. CATAACCAGAAAGGCTTACAGGCTGGTTATGAATGC 1149724 30 100.0 39 .............................. GAGACAAAGCGAATGTTGCAGCGCTGATAAGGTTGTTAT 1149655 30 100.0 38 .............................. CGTCCTGAACATTTGCAAAAGCTGTATAATGACAAAAT 1149587 30 100.0 38 .............................. ACGACATTGTTAGAAGTCTTAAAGGAGCATAGAGAAAA 1149519 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 52 30 99.9 37 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : AAATATGTGTATTTCCAAATTTGAATTAATTGAAGATGACTATTATAAAGTAGATGCATTTATTGAATTGAATGATGAAGCTAAAGAATTGTGGCATAAGTATGTTGAGCTTAAAGACATAAAAAATCTATTTGAAAGGAGAAATATTTTTAATCGATTTAAAGCTGACTTTTATAAATATGTAATATCAATACCTGCAACAGTGGAAAATATGCCTCCTGATATTTGGGGTTTTAAGTATGTAAATTATGATAGTTTAAATGATTATTATGACAAAGAAACAGGTTTTATAACAAAAGGAGTCACAAGTATATGGTAACAAATTTGTCGTCGATCCCCAATAAGGCAAAAACACCTGGGGATAGACGACATTTTTATTTTTCTGATTTTCATAAAGTAATTGATTTTATTGGACAATATGGTATAATAAAGTCAAGGTACTTGACAGAAATTAAAAAATTGTAAGGTGTATAATGTGCTATTTATGCATGTTAGAATGC # Right flank : TAGATTATATTCATAACACACCTAATGCGTTCATAAGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAATAAAAAACTAAGCCCATACCGATGTAAAAATATGGGATAAATATGAAACTAAATGGATATAGCTATATAAATAAAATATAAAAAATTAAGACACTGCAGATTCGACCGTGACCTTAAGACCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAGAGATAAGTATCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGGCTTTTGTTTACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2070740-2073405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001486.1 Thermoanaerobacter siderophilus SR4 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================ ================== 2070740 30 100.0 37 .............................. TGATAGGCGTAGATGCTTCTAAAGAAATGAACAGCGA 2070807 30 100.0 37 .............................. TTGTAGGATGAACATCGTTCCTCACTGGCCTGTCTTC 2070874 30 100.0 38 .............................. TCTCTTATCCAGTCCATTAGCGGCAACACTGTTTCTGT 2070942 30 100.0 35 .............................. AAAACTTGCTCACTGTTGCTATACCGTCTAAAACA 2071007 30 100.0 37 .............................. ATCTCCTCCCCTTTACCAGTGTTTTATTTTCGCCAAT 2071074 30 100.0 36 .............................. TATCCAGTTTTAGTCTTAGCTGTTGCCTGAACAATT 2071140 30 100.0 39 .............................. CAAAAATGGGCTGTCGAAGACAGTCCAGAAATTGGTTAT 2071209 30 100.0 38 .............................. GACAGAGAAGGAGTCTTATTTTACAAACTAAAAACTGG 2071277 30 100.0 36 .............................. GTTTTAATAATAATGGAACATGGACTGATTGGCAAG 2071343 30 100.0 36 .............................. CTGATAGCATAAGCTAATGATAAAAGTGATTTTCCC 2071409 30 100.0 37 .............................. ACTTCTATAAAATATAAAGCTGGAGTTTTAAAAGATG 2071476 30 100.0 37 .............................. CAAATATTAGAAGAAAAAATATTGCAAGCCAAAAAAG 2071543 30 100.0 39 .............................. CAAAGTCCACCCTCCTAATTGTACGAAATTCTTATTTTG 2071612 30 100.0 36 .............................. TGAGTATAAAACTATTACCTTGCACTACAGAAACGA 2071678 30 100.0 36 .............................. ATAAAAGAAGGTGAGATAGATGGCTAATGCTTTTGG 2071744 30 100.0 36 .............................. CTCTTTTGCTTTTCGCTTTCACAATTGTTGTACCCA 2071810 30 100.0 35 .............................. GCCAATCAGTGATGTTCAACCAGATACATCAGAAG 2071875 30 100.0 36 .............................. ATGCACTTGTGTATAACGGCAAAATAGCGCAAAAAG 2071941 30 100.0 36 .............................. CTCTACTTTTTGTAGCAATTGAAGATATGTTACATA 2072007 30 100.0 37 .............................. TCTTCTGAATAAAACTTCTTAATCTGCATTTCAACGA 2072074 30 100.0 35 .............................. ACAGCTTCTTGACTTGCCCATGCTCTTAAACCTTT 2072139 30 100.0 140 .............................. TCAAGTTCGAACACATAAGCCATATCTTTTTGAACTGGTTTTTAGCTGTAAAAGTCAATATATTTTTGTACAAAATTATATTCCACTTTTTGTACAAAAATATATTGACTTTTACATGGGACAAAATTTTCTTCGCCATC 2072309 30 100.0 37 .............................. TTCTACTCTCCCTAATTTTCTGACATTTTTCCCATAA 2072376 30 100.0 35 .............................. TATTGAAAAGGATATTGAATATCCCTTTCAATTTC 2072441 30 100.0 38 .............................. TTGCCAACATGGAAGCAGGTAACATAACGCAGTGCAGT 2072509 30 100.0 36 .............................. ATACCTCTCACAAGCCCTTCTATCATATCCACACCC 2072575 30 100.0 38 .............................. ATGCATTGATGGGCACTTTCGCCGATAAAATGGAGCAA 2072643 30 96.7 36 ........A..................... ATCCTTTTTCCGCCAATTTCATAGTTTCCGGTACCG 2072709 30 100.0 37 .............................. GCAAAAATAACTTGATTTCTTATCGTTACATTTTTAT 2072776 30 100.0 31 .............................. ATTTATTTACGAAAATTTTTAAAAATAAATA 2072837 30 93.3 37 AG............................ TCCCTCAAAATGAGGAATACGGTGTAAAGTATGGAGA 2072904 30 100.0 36 .............................. AGTAATTGTTCAGGTAACTGTTTAGGTAACTGTTCA 2072970 30 100.0 38 .............................. TTTGGAGCTGGCTGGCGAAGTGTATTGGGTGCTTTCAA 2073038 30 100.0 39 .............................. GGGTTTTTCTCATCATACCAAGCACACATGATTTTCAAG 2073107 30 100.0 39 .............................. CAGTTTCGCTGTCACTGTATACTGTTATAAGCGGGCACC 2073176 30 100.0 37 .............................. TCTTCCCAGAAAAACACATTTATGAGAGTGTTGCTAT 2073243 30 100.0 36 .............................. TCCAGCACTTCTACTAATCCCGAAACACAATAAAGA 2073309 30 100.0 37 .............................. ATTCTTCAATGCTCAAAAGAAAATTCGGCGAAAAAGG 2073376 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================================================================================================================ ================== 39 30 99.7 39 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : ATAGGTTCAACCTTTAACAAAGTAGTAAATTCTTTAGTAGTAGATGTTTTAACTCCATTGATTGGAGCCATATTCGGTGCTCCAGATTTTTCTGCTATTAAATTAGGTCCAATAGCCATAGGCAATTTTCTTAACGCTGTTGTTAAATTTGTTATTGTTGCTGCAGCCATTTATTTTTTCATAGTAGCTCCTATGAATGCCATTAAGCGACGTAAACCAAAAGAAAAAGAACAAACACCACCTGAACCATCAGAGGAAGTAAAACTTTTAAGAGAAATATTAGAGGTATTAAAGGAAAAGTAAGGTAATATTGATTAATATAAATTTGTCGTCGACCTAAGATAATGCAAAAAATGTTGAGGATCGACGACAAATTATTTTTTTCAATTTTAGAAAATAGTTGATTTTGTCAAACAATATGGTATAATAAAGTAGAAATACTTGACAGGAATTAAAAAGTCGTAAGGCGTATAATGTGCTATTTATGCATGTTAGAATGA # Right flank : CTTGGGATACGGATGTCTTTGTAGAATAAGACATCTCCGTGTTTTTAGCCTACCTATCCTGAAAATAGTGTCTCTCAAAAAGGCAACAAAAAACTAAACCCATACCGATGTAAAAATATGGGATAAATAAATGGTTAATAAAGTTAAATTAAAAGTTAAGACACTGCAGATTCGACCGTGACCTTAAGGCCTAAAGACTCTAGCTTTTTTAAAGATTGACGAATAATCATATTACGCTTTTTCTCTTCATAATAAGTAGGACCTAATTCAATATATGGTTGCTTTTGCTTGAGAATATGATAAACTATAATTAAAATGCTATGTGCCACTGCAACTGCTGCACGGTTTGCTCCTCTTCGAGCAGCGATGCGGTGGTACTGACTTGAAAGATAAGTACCTTTTGCCCTTGAGGCAGCTCTGGCAGCTTCAATAAGAGAGCTTCGCAATTTTTGGTTACCTTTTCGAGTTCTTGCAGACTTTTGTTTACCAGCACTTTCATT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2075103-2075269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001486.1 Thermoanaerobacter siderophilus SR4 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2075103 30 100.0 39 .............................. TCTCCTCCTTTATTTTTCTTTCCCACATCGGCTGTGGGC 2075172 30 100.0 38 .............................. ATCACAAAAGCAAAAGCAGTAAAAGAAGGGGACATAAT 2075240 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 98.9 39 GTTTTTAGCCTACCTATAAGGAATTGAAAC # Left flank : TACTTTCCATAGCAACAACAGAACAACCTTTAGCTTTAATAAATTCTTTTAATGCAATAAGGTCATCGGTCATAGTTGAAAAAGTGCGGATTTCTTTACCTTCTGGTGTTATTATACAAGCTACGACATTCTTTTTATGGACATCTAATCCGCAAACATGAGAATAAACTAAATCCATGAAAGAACCAACTCCTTTTTTAAAATTTGAACGATAGCGACTGTAAAATTGAAGAGCTGGTGCAACAACCATAAGGGGTTATTCTATCCTGCGTGCTTCCCGTAAAGGGAGCAACAATCTGTGGTGCACCTGGTCGTTGGAGTCTGTCTATGAGTCGGGCTCAAAGCACCAAGGTAAGAACGACCTTTCTTCACCAGCCGCTGTACTGATTATATCATCAAAAAAGGACATTTTCATCCTCTGCTGGTGCCGCATTTGCGGCATGGGAGTCTATAAGGAATTGAAACTGCAAATAGCGAGGTGATGTAGATGGCATGGCAAA # Right flank : CCTATAATTAAGATATGAAGGTTATAGTATTTACTTAGACCTGTTTATAGGAAATAGGGGAAGAGGAAAAGGCACTGAAGCAATTTCAAAAGATTTATGTGGAGGACAGTTATTTTTGGGATATAGCTGAAATTTTCAATGATATGGAATTATAGAACTTTAAATATGGGTAAAAGGGAAATAGTTTAAAAATGTTTATGAATTTAAAAGGCTAAGTGTGTTAGTAAGAAAATATATGGGTGTGTATAATGCCTTTAAATGAACAGCAAAAAGCATTTAGAAGACAAATAAAAGAGTATGAAAAAGAAAAAAGATCAAAAGGTATAGAAGAACCATTAAGTTATGTCAATGAAAATTCTCGTCCTTGGAAATATGTCAAGACTTTATCTCTTGCAAGTATAATACCAATACTTATATTATTATGGAATACATATGCACTTTCCACATGGATAAAGCCAATACTATGGAAGTTAGGATTTCCACAGGGGAATGTAAGGTCG # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //