Array 1 143912-144545 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048109.1 Klebsiella michiganensis strain BD177 plasmid unnamed1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 143912 27 89.3 32 T....-.........T............ ACCACACTCTCGCAGTGGTTCGCGCTCATGCC T [143929] 143972 28 100.0 32 ............................ TGACTCAACCTAAAAGGTGAAATCCCACTGTT 144033 28 100.0 32 ............................ TCCCGCTTCGCATTACGGCAACGATCAGCTTA 144094 28 100.0 32 ............................ GAACAGGTCCCAATTCTCCGTCAGCAGCCTCA 144155 28 96.4 32 ...............T............ AGATTCAATTTTAGAATTCATTTCCTAAATTA 144215 28 92.9 32 ...............CA........... TGAGATAATAACTTGGCTCGACGCAAAAGTGA 144276 28 92.9 32 ...............TA........... CAATACGCTGATTGATCCACTCGTCAATTTCA 144336 28 92.9 32 ...........T...T............ GCCGTTCATATCGATCATCGTCAGGCCGCTGC 144397 28 100.0 32 ............................ CCCTCCGGCATCACACTGCCCGGCGGAGAGAA 144458 28 100.0 32 ............................ TATGATTATCACCCGAAATGTCATCATCCGGA 144518 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 96.8 32 CCGATAACCCCCGCAAGCGGGGGAATAC # Left flank : GTTTTCGGTGAGTTACATCTGGAAAAAGTAAATCAGTATGCAGGTGAAGTTTGCGGTGATTTTGGTGCTGAGCTGAATGAATGTGACGGAAAAGCCGATCATGTTCACATGCTGGTCGAATACCCACCAACTGTGCAACTGTCAAAACTGGTTAACAGCCTGAAAGCCGTCACAAGTCGGCGGCTACGGAATGAATTTCTGGATTTGCGGGAGGCGTACAATAAGCCTGTTCTCTGGTCACGCAGCTACTTTGTTGGGTCATGTGGTGGAGCACCGCTGGAAGTCGTAAAGCGCTACATTCAGCACCAGCACGGCTAAATGTTCCTTTAACGCTAGCGCGTCAATTCAAATTCCCCTCCCACCTGCCACGGTGGGAGTACCCTTTGAGACAAAAGATGGCAGAAAGTGGGTTATCCAGGAAAGTAACTTTCCTTGATTGTAAAAAGTCCCATCTGCTTGTAGGGGCACATGACAAAAGCCCCACCATTGCGGTTTCTATG # Right flank : CTCTAAAAATAACCGGTTGATTATAAAATAATAAATAGCACCACTAAAATCCACCAGCTTTTGGAGTTAGCGGGCAGTGAAATCAAAAGATTGATTTTCATTGAATGCCTTCACCATAGCAAACAACTCGTCCCCGGTAATCTCAACACCATTCGGTGTGATGACGATTTCTCCAAGTGTAACTGGTACCAGTTCACCCGGCTTCCAGGTCGTAACTGTCCAGTGAGCCTCCACCAGACCGCAGTTATGATTCGCATGACCGCCAAAACGTGGCTCGGCTGCAAAGCGGATTAATGTAGAAATGAAAAGCCCTGCTTCCTCATCAGTCGCATTTTTAATACTCATGCGATGGCTGAGTTCTGCGCCGGTGATAAACGCTTCGTACGGGTCAATCGGGCGGCGAATTGACTCGCGAGATTCCTGCTTCTGATCTTTGCGGGCCTGAATTTTTTCATCGAGCTCCCGTACTTTGATTTGAAGCTCAGCTTTGGTGTCTTTAT # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATAACCCCCGCAAGCGGGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 373478-375521 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048108.1 Klebsiella michiganensis strain BD177 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 373478 29 100.0 32 ............................. GTTGGCGCGCTGCAGCGCCATTCCGGTGAGGT 373539 29 100.0 32 ............................. GTATGAAAGATTTCAAAATTGAATATGTGAAT 373600 29 100.0 32 ............................. CAGCGCTGGCCAAAGCTGTGATCCAAGTTCTG 373661 29 100.0 33 ............................. GGCCCATTTCCATCACCGGCTACAGATTATATC 373723 29 100.0 32 ............................. CAGCACGTAGCGGCCAACCACCAACCAATCCC 373784 29 100.0 32 ............................. CATAACATTATGGCGGCATTGTCGGATTAACT 373845 29 100.0 32 ............................. CGAACATAATAATCCGGCTTGCCGAGCAGCTG 373906 29 100.0 32 ............................. CCATCAGTGATTAGCGCGGCTATTGCTGTTTT 373967 29 100.0 32 ............................. CAGCTGGGGTTATGCGCCGGTTACCACGTTAA 374028 29 100.0 32 ............................. CTAGTGACTGATTTCTATCAGGGTATAGGCCA 374089 29 100.0 32 ............................. TTACCCGACGCCGCTTTCACCGACTGCGTAAA 374150 29 100.0 32 ............................. CGGAGCGTGAGGTGCTGAAATCCGCACTGGAC 374211 29 100.0 32 ............................. ATATTGGGTGTGTTTATTGAAACGCCAGAAGA 374272 29 100.0 32 ............................. GTTGGCGCGCTGCAGCGCCATTCCGGTGAGGT 374333 29 100.0 32 ............................. GTATGAAAGATTTCAAAATTGAATATGTGAAT 374394 29 100.0 32 ............................. CAGCGCTGGCCAAAGCTGTGATCCAAGTTCTG 374455 29 100.0 33 ............................. GGCCCATTTCCATCACCGGCTACAGATTATATC 374517 29 100.0 32 ............................. CAGCACGTAGCGGCCAACCACCAACCAATCCC 374578 29 100.0 32 ............................. CATAACATTATGGCGGCATTGTCGGATTAACT 374639 29 100.0 32 ............................. CGAACATAATAATCCGGCTTGCCGAGCAGCTG 374700 29 100.0 32 ............................. CCATCAGTGATTAGCGCGGCTATTGCTGTTTT 374761 29 100.0 32 ............................. CAGCTGGGGTTATGCGCCGGTTACCACGTTAA 374822 29 100.0 32 ............................. CTAGTGACTGATTTCTATCAGGGTATAGGCCA 374883 29 100.0 32 ............................. TTACCCGACGCCGCTTTCACCGACTGCGTAAA 374944 29 100.0 32 ............................. CGGAGCGTGAGGTGCTGAAATCCGCACTGGAC 375005 29 100.0 32 ............................. GTGACTTTGCCTCTTGAGGCTGGCGGTACCGC 375066 29 100.0 32 ............................. CTCTTGAACACTGGATTTTCGGCACCGGAGAT 375127 29 100.0 32 ............................. TTATCACCGAGTTCAAGCGCCATGAAAATGGC 375188 29 100.0 32 ............................. GATATCTTACCGCCATCCGTTGCAGTGAGGTT 375249 29 100.0 32 ............................. ATAAACCAGAGCTTGCCGAAGGATGGGATGAA 375310 29 100.0 32 ............................. TAACGACCCCCAACACGTCGAGAGTATCCTCG 375371 29 100.0 32 ............................. GTACACCATCTGTTGTCGGAAAATCAGGGAAC 375432 29 96.6 32 ............................C CAGTTCTACACGCCCGTTGAGTTAGGTAAGAT 375493 29 89.7 0 ...........A.G..............A | ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGTGATATCGCGGTGTTTTCAAAGGGCAATATTCAGCGTCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGAATACGCGTTATCAGGTTGACTATATTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACTACCCACCTTCAGGATCCGGCGTTAAAGGTGGCACAGCTTCAGCAGCCCGCGCTGACGAGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTTTGCCGCCGCTGATAGAAGCGAGTTTTACAGTATTACTGAATTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTGAGCTAGTTGTGGTGAAATGCGAGAGAGGTAAAGGAATTTTTTTTGTGCCCTTTAAAATCAAATGGTTATGGCTCTTTAAAAAAATCAATTTGTTGCAAAAATGTCGGTAGATTGTTCTTTGTGGATAAATTTATTATAAAACAATAAGGTATGGTTAGT # Right flank : ACAGTCAATTTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGAGCTTATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGTGCCGTCGCCGGTCACTTTGACTTCACCCTTATCCTCCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATCTTATTCAGCGTGGCGCGATCCAGCGCGATGGTAGCGTCGGCGTCTTTGGCTTCGGCATCGGCTGTGTGGTTGAGCACGCCGTTTTCCAGCTCTAGCTTATATTTACCGCCATCGTTACCAAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTTTCGCCGTTGATGTGGACCGCAAGATAGTCGAAGAACATTTCCGGGGTCATGGCCCGCACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACGACGCCGTTGCGTAGCTCCTGCGCGCCGGTCAGGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5806634-5810383 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048108.1 Klebsiella michiganensis strain BD177 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5806634 29 100.0 32 ............................. TCGTTATGGCAAGAGAACCGAAAAGGGCCGAA 5806695 29 100.0 32 ............................. GCTGTGCTTCAAATAAAACTAAATAGGCTGAG 5806756 29 100.0 32 ............................. GCGGTTACTGGCGAGACAGGACTATGAAAATA 5806817 29 100.0 32 ............................. CGGATGACTTCCCGCTCAATCGCTTCGTGAAC 5806878 29 100.0 32 ............................. CCAGCTCGCGAAATACAAAATCACATACACCA 5806939 29 100.0 32 ............................. GCCGGTGAGGCCGATAACGTGTTGGCGCTGAC 5807000 29 100.0 32 ............................. ATAATCACCAATTCACTTTTTGTGAATACATT 5807061 29 100.0 32 ............................. TACCAGCTATTCATCCAGCAATACAGCCGCGT 5807122 29 100.0 32 ............................. ATCTGTTCAGTGCAGAGGAAGGGAAGGGAACA 5807183 29 100.0 32 ............................. GCCAGCATCGAGCAGCTGGAATCGCAGAGTTC 5807244 29 100.0 32 ............................. CGCCCCCAGTGATGGGGGCTTTTTGCTGTGGA 5807305 29 100.0 32 ............................. GGGAGCGCAGTTAAGGCGGCTAACGTCGAGCA 5807366 29 100.0 32 ............................. GCTCTTTTTTTAGCATTGCATGAGATGTGGGG 5807427 29 96.6 32 .G........................... ATGGTCCTGGATGGCTCGACTGAAGAAGTCGA 5807488 29 100.0 32 ............................. TCATCCGGGAAACTGGCTGCGGCGATGGGGGT 5807549 29 100.0 32 ............................. CCGCAATCACAGTAAAAGACGCCATTCATTTC 5807610 29 100.0 32 ............................. TCATCCGGGAAACTGGCTGCGGCGATGGGGGT 5807671 29 100.0 32 ............................. CGCCGTTACCAATCTGCAGAAGTTTTGCCGCA 5807732 29 100.0 32 ............................. ACTGGGCGATTCTGACGGGAGTCTGAGTATGG 5807793 29 100.0 32 ............................. AGATCGCCTCTGGCCTGGCAAAGGTAGATTTA 5807854 29 100.0 32 ............................. TCATCGGGCTGATTAGTCAGCGCCGGGTTAAA 5807915 29 100.0 32 ............................. CGACGATACTCTCGACGTGTTCGGGGTCGTTA 5807976 29 100.0 32 ............................. GTATCACCGTTGAGTAAAATATTTCGGTAGTT 5808037 29 100.0 32 ............................. CATGTGGGGGCATTTATCGATGTGCGAGTTGC 5808098 29 96.6 32 ............................T TGTGGTATTCCACGGAAACCGGCGGGGTTTTG 5808159 29 100.0 32 ............................. AGCGCTACCCGCTGGCGACGTTTAAAAGCGAT 5808220 29 100.0 32 ............................. CTCCACGACACGCTTGCCCAAAGCTTTCTGCT 5808281 29 100.0 32 ............................. GATGGAGGCATCAAGGCGAGTAGCCTGGATAA 5808342 29 100.0 32 ............................. TATCTGTCAGACGAAGATATTCAGGCAATCTG 5808403 29 100.0 32 ............................. TGGGAAGGCTGGAAGGGCCGCAGCATCGAAAT 5808464 29 100.0 32 ............................. CCAGTTAGTAGATGAGTTTGCATCACGATTTG 5808525 29 100.0 32 ............................. TTTCAGACTGATATTTTTTACTGAGCTGCCCG 5808586 29 100.0 32 ............................. CGCTCAATGGCGGTGACGTTCTCCAGCTGCTG 5808647 29 100.0 32 ............................. GGTAAAAAAATTACAGGATTTTTCAAAGGCCA 5808708 29 100.0 32 ............................. GCACTACCGACGACAGTAAAGACCGTACCCAG 5808769 29 100.0 32 ............................. ACAGAGTCAGTCACCGTTCCCTGAATGCGAGG 5808830 29 100.0 32 ............................. TCCACTTCGTATCGACCATCATCGAGTTTCTT 5808891 29 100.0 32 ............................. TCAGCTGAGAAACAAAGGTATGTCCGCATTCA 5808952 29 100.0 32 ............................. CGGGAAGACTGACGAGACAGTACAATCTTGAC 5809013 29 100.0 32 ............................. CCAAATCACTGAATAATGCAGTGCTTGGTTTA 5809074 29 100.0 32 ............................. CGTGGTGGTAATATTTTAGTGCTTCAGCAGAT 5809135 29 100.0 32 ............................. AGTGGCGACACGTTAAAAATGACCGGGTTAAT 5809196 29 100.0 32 ............................. TTCCGGCAGGCCAGTCCGTACACCGCATCGTG 5809257 29 100.0 32 ............................. ACCATTCCTAATCCCAGAATTTCAGCGGCCTG 5809318 29 100.0 32 ............................. TAACCGCGTTTTGCTGCTGCGCCCATTAACAC 5809379 29 100.0 32 ............................. GGGAGGGAGGAAAAGCTCTGGTATGTGATCGC 5809440 29 100.0 32 ............................. CAGACCGTTACCCTGTCAGCGCAGCGCCTTAC 5809501 29 100.0 32 ............................. TAATGTTGTTGGGTTTATTGTTGGCCTTGCTA 5809562 29 100.0 32 ............................. GGTACTGGTGTTGCTTAAAAAAGCTGAATATG 5809623 29 100.0 32 ............................. CTGATACCGTCCCACAGGTTTCCTGCCAGATG 5809684 29 100.0 32 ............................. AACCTCCTAAAGTTGGTAAGCTCATCATACAC 5809745 29 100.0 32 ............................. CCAACGGTGGATGACAGGCTGGATAGCCCGAT 5809806 29 100.0 32 ............................. CATCGTAATTCCCTGATACGGCACCAACGCGA 5809867 29 100.0 32 ............................. CCATCGATGAGCGCTCTGAAAACGGGCTACAT 5809928 29 100.0 32 ............................. CAGCGAACATCGCTATCAAACCCGGCTACCAG 5809989 29 100.0 32 ............................. TTTTGGCCCCGGCGATAATTTCATCCAGAACA 5810050 29 100.0 32 ............................. CGGGCGGCGCTTCGAAGTGGTGCCAGTGATGA 5810111 29 100.0 32 ............................. AGCTTGCTACCAAAATAGTTGAGCACGGTCTT 5810172 29 96.6 32 ............T................ TTATTCGTGCCGATGTGGTGCTGGCGCGCATC 5810233 29 96.6 32 ............T................ AGCGCATTCAGAAACGGATAGCTGAGCTCATG 5810294 29 100.0 32 ............................. GAAGACGCATCTGATTTGGTGAAGACGGTCGA 5810355 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 62 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTACTTTCCGCCACGCTCTCTCAACAGCAGCGAGACAGGCTGGTTTCTGCCTTTGCTAAGGGGGCGAAGAGCCGGGTTGAAGCGCCATTCCTGGGCTATGACGACTATCCATGGTTAACGCAGGTGACGAGGTCGGCGGTAGTTTCTGAGTATGTGTCGACGCGTAAAGAAGTTGAACGCAGCGTTAAAGTTGGCTGGATGCACAGCGAACAAGAGTGCATTGAACGCATTGAGCAAGCCGTAAGCCGGGGAAAATGCATTGCCTGGATACGCAACTCTGTTGATGACGCGATTGGTATATATCGCCAGCTTCTCGCCAGAGAGGTCGTTCCCGCTGAAAGCCTTCTGCTATTTCATAGCCGCTTTGCTTTTCACGATCGTCAGCGCATTGAAAATCAGGCACTGGCGCAGTTTGGTAAAAAAGGCGGTACGCAGCGGGCCGGAAAGGTACTGATTGCCACCCAGGTCATTGAGCAAAGCCTGGATATTGATGTGGATGA # Right flank : GCCTGGAGGAAACGTGGCAACAGTTCAATACACGTGTTCCCCACGCCGCCATCCTTATTATCCTGTACTTTATTTTTTCCCATCATTCTTTAGTGTGGCAAAGTCCGGTTCCAGACAATACTTGCCGAAATTTTCGGCTCATGGGAACTGTGCGCTTTTTTTAACATAGCGCTTATACAGACGTTTTACCGATGCTGGGTCCCGAGCCCAAATCCAACCCGTCCTGCCAGACGCGCTGCCAGATATAAACCTGGCTGTCGGCGATGGATCGCGTGCTGGCAGCCAGTAGCAACAATGGTATTAAAAAATGAAAATGCATCATGGCGACAGTCCTTGTTGCCGGATTTTATCGTTGTCTATTTTGAGGCGGGTCTCTTCTCCGCCTTCGCCAGCTCTTTCACCAGCGGCAGCATCACTTTCATCACGTCGCGTCCGCGATGCTCAATACGCCCCGGCAGCGCTTTATCAATATACTGTAGGTTATCCAGCTGTACGTCATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //