Array 1 436329-436655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH165061.1 Peptoniphilus indolicus ATCC 29427 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================== ================== 436329 23 100.0 48 ....................... ATGAAATCCTTGGTATTACCAAATTTTTCAATAATGAAAAAACAAAAA 436400 23 100.0 58 ....................... TTTTCCTTAATAGAATATGAATGTTTAGAGTTAGAAGCTAAAACTGAAAAAACAAAAA 436481 23 100.0 53 ....................... GTTAAATTTTCAGCTTTTATAAAGCCGATTTCTTCAATTCGAAAAAACAAAAA 436557 23 100.0 53 ....................... TATTTTACCTGTATGTCCGCAAGCATACGTGTCTTCAAATGAAAAAACAAAAA 436633 23 91.3 0 ................TA..... | ========== ====== ====== ====== ======================= ========================================================== ================== 5 23 98.3 53 AATCCCCGACAGGGGACGGAAAC # Left flank : AAGAATATAACCCAATAAGAATAAGGTAGGATGAATTATGCAGAAAGACTTTCTTATAAAAGCAAAAGAAGATATTTTCTATGAAGAAAAACACCTAATTTTGATAATTTATGATATAGTAGATAACAAAAGAAGGAATAAATTTTTTAAACTATTATCAGGATATATGATATCGGTTCAAAAATCTTGTTTCGAATCACATTTAACAGAAAGTGAATTCGAAAAATTAGCTTACAGAATCCCATTCTATATAGATAAAGAAGAAGATAATGTACGCTGTTACAAATTATCAGCTCATGGGAAAGTTTATAACTTTGGAAGTGAAAAGAATGATGCCATAGAAGATATAGTTATATTTTGACCGATGGCTTAAAATCAAGAGATAGGGCCTTAAATTAAAAAATTATTCAGATAAAATCTATAAAAACAACCCCTGTCCGCAAAGTCATTTTACAATCCAGCAAATTCAACATCTATAAAGGACAGGGAAAAAACAAAAA # Right flank : CTATTATTAAGTTTTCATTTAAAGCCTATTTTATTCCATTTAGCAGAAGCTCTGAGTTTTACCTCAGTGCTTTTGTATGCGTTTGCTATTGTGTTTACCTATTTCGTCTGTTAAACTTATAGGTAAGAAGTTAAGGGAAAGGCTAAAAGCCTAACCCTTTGAAAATTTTGAATAGTCCTGCAAGTGTTGTAAGTAGGTTAATAATTGCCGTTATTAACTCTAAATACTCAGCCTTGTGGGGTTTTTCTTTTTCTTATCCAATTTAACCACCCATTTTAAGTCAAGCGGGCTATAGGGGAAAAATAAAATATGTATCTTACAAAAATGTAAGGTCAAAGGAGAAAATGTAAGTTTTTTATAAAGGTACATTTTCTCTTTTTTTATATAATGTATTTATGAGGTGATGATATGGCATTTATAGAAGTTTCAAATTTAAAAAAGATATATAGTTCAAAATTTAGTTTAAAGACAGTTGAGGCGTTGAAGTCAGTCAACTTTGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.66, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 826554-828178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH165061.1 Peptoniphilus indolicus ATCC 29427 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 826554 30 100.0 36 .............................. CCAATTTACTATAGTTATAAGCCTGTTTTTGTTTGT 826620 30 100.0 36 .............................. TACTCTTGGACAAACTCTATCATTTCGCCTATAAGG 826686 30 100.0 38 .............................. TTTAATAAATCCACCACCTTTCTTATTGATTCAATACT 826754 30 100.0 37 .............................. TTTAACATCAACTCATTTGCAAGAGATACTCCAAGCT 826821 30 100.0 36 .............................. GAGTATTTAAATGTTATGGTTTTTAGTGCTGGAGTA 826887 30 100.0 36 .............................. TACATTATTTGACTTTGAACACGCTAAAGATTTGGA 826953 30 100.0 36 .............................. AGGTCTATTGAGTACGAAAGGGCGGCTCAAGGTGGA 827019 30 100.0 37 .............................. TTAAAAGAATTTGTAGACAAGATTAATGTTCTAATTG 827086 30 100.0 36 .............................. CAATAAGCACATTTGCACAATCCAGCCAAAACATTT 827152 30 100.0 38 .............................. TATATAGTATAATTATAACATACATAATAAGTTATGGA 827220 30 100.0 38 .............................. ATAGCAAAACGCAAACCAAGTGCTAGCAAATTTGGAAC 827288 30 100.0 38 .............................. AGGGTTTGGTTGTAGTAACAAGTATAAAAACGGATTTA 827356 30 100.0 34 .............................. GTATTATAAGGCGGATCTGTCAATAATACATCAG 827420 30 100.0 37 .............................. TGTATAGTAGCAGATGACTTAACAGAACAACAAATAA 827487 30 100.0 38 .............................. ATAATGGTATATGATGAAGATGACGAAGATGATTTCTA 827555 30 100.0 35 .............................. ATCTTCTATATCTCCTGTACGATCAGTAATGTTTT 827620 30 100.0 36 .............................. AATAATTAAAATTGGGATTATGAAGTTCCATTGCGG 827686 30 100.0 36 .............................. TATAGCAATTAGCTCAAGATATTTATACATTTCTTG 827752 30 100.0 35 .............................. GATGGAAAGATGTATTACAACATAGCAGAAAGAGT 827817 30 100.0 36 .............................. ATTTAATAGAAGATACTAATTTCATACGGGGAGTAA 827883 30 100.0 36 .............................. CCAAAATTTTATCAGTTTTACAATCGTGCTTTTCTA 827949 30 100.0 37 .............................. GTATTTCTTGTATGTTATAATCATCAAGAGGCAATTC 828016 30 100.0 36 .............................. TAATATTATTAAACAAAAGATACCATATTTTTTGTA 828082 30 100.0 37 .............................. TTCATTAGAACTTGTGGGTGTGTCGCCATCGCACCAT 828149 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 25 30 100.0 36 GTATTAATAGAATCAAAATGAAATGTAAAT # Left flank : AAAAGAATATAAAGGATTTAAAATATGGTGGTAGTATGTATATGATTTTAGTTTATGACATTACATTAGATGAAGATGGAGCCAAAGTATCTAGGAATGTTTTTAAAATATGCAAAAAGTATCTCACACATATTCAAAAGTCTGTATTTGAAGGAGAGTTAAGTGAGTTACAATATGCTAAGTTACAGAGAGAAATTTCAAAATATGTAAGGAAAGATAGAGACTCTATAATAGTTTTTCACAGCAATAATTCAAAATGGTTAAAGAAAGATTTCTTAGGGCTTATAGACGATGCGACTTCTAACTTTATTTAGTATGTCGATGTGAAATTATGTTATAATAACGTTGCACCGACATTTAGATTGAAACGGCTTATTTGCTAGATTATAATTGCAGATTGAAATTATATTAGATATAAGTGAAATGATTTTTTTATAAATTAATTCATAGACAAAATATTGGGCTCAATCTAGCTTGGTATGAGGCCTGAAATTAGACCT # Right flank : TTTTTAAATAGAATTTAAGGAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAATCAAAATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 2757-70 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH165069.1 Peptoniphilus indolicus ATCC 29427 SCAFFOLD9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2756 30 100.0 36 .............................. AACGTATTGTGTGCGTTAGGTATACCTCTTGCTCTA 2690 30 100.0 34 .............................. ATATCTTTTATATACATTTCATATAGGGATTTAA 2626 30 100.0 37 .............................. GTAAGGTATTCTGATGGTTATGTATGCCCTAAGTGTC 2559 30 100.0 35 .............................. GAAACAAAACCTAACATCTTGTAGCAAGCGTAGAG 2494 30 100.0 36 .............................. ATACGAGAGAAAAAGGCAAACTATAGGCAACAAAGT 2428 30 100.0 36 .............................. AACAAAACCTAACATCTTGTAGCAAGCGTAGAGCAA 2362 30 100.0 35 .............................. TGACTTTAAATTAAAGAGTGTATCACGTGAGAAAA 2297 30 100.0 38 .............................. TTTTCATCAACTCTTGATTACTATCTTGCTTAGCATTA 2229 30 100.0 37 .............................. TAAATTTATCATCTGCATTAATAAAATAATTATACAT 2162 30 100.0 35 .............................. TTTTCTTTATAATCAAATGATAATACTTTTTCGTA 2097 30 100.0 37 .............................. TAAATTAAACTCCTTATTTAAATTCGTGGGTCGACTT 2030 30 100.0 38 .............................. AATGTTTCTTCACTTTCTTCAAAATCAGCATCATTGCA 1962 30 100.0 37 .............................. TTGTTTCAGGATAGTTCATTAATTTAGCAAATTCAGT 1895 30 100.0 35 .............................. ACAATTGTATCCAGCATTGTAGGAGATAACATCGA 1830 30 100.0 35 .............................. TTATCACCAAAAATATTTGTTGTTTTTTCATTAAA 1765 30 100.0 37 .............................. AATTTAAAATTTAACGACTATGTATTAGTCGAAACAA 1698 30 100.0 37 .............................. GTGTTCGTTTACTTTGTTTTTATTACTAAACTTGTGA 1631 30 100.0 36 .............................. TCTTCATCTACAGCTACAAAGTCTGTTTCAGACTCA 1565 30 100.0 34 .............................. CTAAGCTATCAATGAATTGTGCAACCTCTAACGC 1501 30 100.0 37 .............................. TTTACAGTAGTGAGTAAAGTTTGCACACACTGTACAA 1434 30 100.0 36 .............................. GTTACTTTTATTTCTTTCAAAAAGTTTTTTTATTTA 1368 30 100.0 36 .............................. ACCGTAAAAAGAGCCGCATTCTGTCTATTATTTCTA 1302 30 100.0 34 .............................. TTGTTTTAAAATTTTTTGTGGTAGATTTTTAGAC 1238 30 100.0 36 .............................. ATGTATATTACTACAAAATTTAGATGGCTATTAGAT 1172 30 100.0 37 .............................. CTTTTATTTCCTCAACATCTTTAGCTAACTTTTTATC 1105 30 100.0 38 .............................. GATGATTGTCATGACTCTATTGGAGTTATGATAGACAA 1037 30 100.0 37 .............................. ATTTTATCGGCTCCCATAGCAACTAATGCGCCAACTC 970 30 100.0 35 .............................. TAACTCTGCAATTGTCAGCTGTCTTGCTACATAAA 905 30 100.0 36 .............................. TGTGGTCCAGGGGTTAATTTGATTCTTTCAAGCTCA 839 30 100.0 39 .............................. CTAAAACAAGGATTGCTGAATGTAATAGATACTTATGAG 770 30 100.0 37 .............................. TTTTAGCTGGAATTGTAAAAACTTTTTCATCAGATGG 703 30 100.0 36 .............................. GTTCTTGTCTTTCTTAGTATTTGACCTGCTTGTCCA 637 30 100.0 39 .............................. CTGGGTGGCAAAGAGAGCACACAGTGGTAAATGGAAACT 568 30 100.0 38 .............................. TTGAATATGCCAAACATCCTGATAGTCATTTTCGCCAT 500 30 100.0 36 .............................. GAGATAGCTGCGAAAATAAAAGCTGTTTCGAGTGAA 434 30 100.0 36 .............................. TTTGAATTCTTCCACTTATCCCGATCCTGTGTCCTT 368 30 100.0 37 .............................. AAATTCAGACTTTTTAAACTCATCCATTTTTTTATTA 301 30 100.0 36 .............................. TTATTTTTTTAATTAGAATACTTAGAGTTGTAGCAA 235 30 100.0 38 .............................. AAAAACTTTTCAGCTAGAGTAGTTTCTAATGTTATTTT 167 30 96.7 37 ........................A..... AAATTTTCAGATTGATTTATAACTACAATTGATTTAC 100 30 93.3 0 .......................A..C... | C [73] ========== ====== ====== ====== ============================== ======================================= ================== 41 30 99.8 36 GTATTAATAGAATCAAAATGAAATGTAAAT # Left flank : TATCCTTTAAACTTTTATTGTAA # Right flank : TAAAAATAAATAAATTATAAAACTTTTGTTTATACAAAAATAATTAAAGATAATTTCTTAGTTTATATAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAATCAAAATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //