Array 1 21902-21754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDZ010000038.1 Escherichia fergusonii strain EF111 111-1-p_(paired)_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21901 28 100.0 32 ............................ AATGGTGAATATGGCAGAAAAGCCCTTTGCGA 21841 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 21781 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGTTCATCGTCGAGTTACAGGTTCAGTTGGATCAGAAAGGGGTTTCCCTGGAAGTGAGTCAGGAAGCGCGTAACTGGCTTGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCACGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGTTCGCTGGTGGATGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGATGATGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTGGCTGCCAAACCTCATTGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTGCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACGCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27605-26418 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDZ010000022.1 Escherichia fergusonii strain EF111 111-1-p_(paired)_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27604 29 100.0 32 ............................. CTCCAGAACAAACGCTTAATATAGGGATTCCT 27543 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 27482 29 100.0 32 ............................. TCAGTAAATGCCAGCAGCCTGGAGCCAGCGCT 27421 29 100.0 32 ............................. CCAGTAATCACGGACGCTCTCAGCGTCTTCGC 27360 29 100.0 32 ............................. TTGACGACGCAAAAAAATAATATCCGGCAGTC 27299 29 100.0 32 ............................. GCCGTGTTGCGCTCGCTTGTTACCACGCTTGG 27238 29 100.0 32 ............................. CCTGATAGCGCCTCCAGCCCTCGCCCTGGTGC 27177 29 100.0 32 ............................. CGGATATCGTCGCCGGTGGGGCGCTCCCAACC 27116 29 100.0 32 ............................. CTGCTTATTGCCATTGCCCCAGCAATACCAGC 27055 29 100.0 32 ............................. GCTCGGGAATAATCGAGTACGCCAGGAGTATT 26994 29 100.0 32 ............................. GCGATTTGTCGCGCATGTCACCGAATCGGAGA 26933 29 100.0 32 ............................. CAATTAGAAAACGCAATGACCCGCGCGCCCAT 26872 29 100.0 32 ............................. AGATTAAAGGGCCGCAGCATAACCCGGAGATC 26811 29 100.0 32 ............................. ACGTTTGCCAGTAATTTGGCTCGTCATGCAAT 26750 29 100.0 32 ............................. GTTTTTGCTGCTGCCAGATTACCGAATATAAC 26689 29 100.0 32 ............................. TTTGGTAGGAAAAAATATCACTGGTATATCTA 26628 29 100.0 32 ............................. AACATGAGTGGGCTTGGTTACATTCGGGGAGC 26567 29 100.0 32 ............................. TATTTGCCGTTCTTTCGCGTGCGCCGGGTGAC 26506 29 100.0 32 ............................. GTAATGCACTCACCACGGTTACAACAGATATT 26445 28 86.2 0 ......................-.CT..C | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGGCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACATTGGGCGATATCGGTCACCGGGGGCGCGGCGGGTGAGCATGGTCGTGGTTGTTACAGAAAATATCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTCCTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAGTTTCAGACCTGGGGTGAGAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGAAATAAAGTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : AGCTCCCATTTTCAAACTCCTCAAGACGCCTTCGCCAACTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACGATCAAATTATCGAGATTAATCACCAGCAGGGTATTTTTCTTTTCAGTATCGCTCATGCGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 43564-42558 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIDZ010000022.1 Escherichia fergusonii strain EF111 111-1-p_(paired)_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 43563 29 100.0 32 ............................. ATCCGCAGAAAGTTAAAGCTGAGTATGCTGCC 43502 29 100.0 32 ............................. AGACTGCCGATATTATCGACCCCAACAATCCA 43441 29 100.0 32 ............................. TTGCGGCGGCAAATGAATTCGGGCCACACGCG 43380 29 100.0 32 ............................. GCGGCGATCATCTTTGACGCCGACCTGTTTCG 43319 29 100.0 32 ............................. CGGCTGATAGCGACGAAATTACCAAATACCTG 43258 29 100.0 32 ............................. GTACCGCGACTCACCAGATAGAAATAACGCAA 43197 29 100.0 32 ............................. ACAGTTGACGCGTCGGTGCTGTGCCAGTTCGT 43136 29 100.0 32 ............................. TTCGTCGGTGACATCACGTCGGCGTCACCGTC 43075 29 100.0 32 ............................. CCCATAATCACCTCTACGCCCGCGCCGAAACG 43014 29 100.0 33 ............................. ACAATAACAAAAGAGCAAGTCGCACGTTTGCGC 42952 29 100.0 32 ............................. CCCGGCGAACCGTCAACAACCGCTGATGACGA 42891 29 100.0 32 ............................. TTCCATAGCGACCTGCACAACCACCGGGGCAA 42830 29 100.0 32 ............................. TTTTCTTTGCGAGGACGCACCAGGAATGCCCC 42769 29 100.0 32 ............................. TTTTCTTTGCGAGGACGCACTAGGAATGCCCC 42708 29 100.0 32 ............................. CTCCCGGTAATTGAAATCCCTGGGAGCGAAAC 42647 29 89.7 32 ................T.A..A....... GCTTCAGATACATATACTTTAAGTGCAGCGCT 42586 29 72.4 0 ........A..T...A.AC.AA...T... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.8 32 GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCTCGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGGTTTTAGTGGGTATAGAGTTATCTAAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ATAATATCGACGATACCAACCTAATATTATCAAACGTAAAAATTCCAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATGCCTCCTGAACGGCGTGAGTCAAAATATTGCATTTTTATCAAAGTTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAACATGAAATATATGAATTGGTGAGTTATAAAGATTATCTGTACTCAACAGCCCATGAACTTGTTGATTTTCAAGAGGGAGTATTACGATTTCAGAAAATTAGGATAAAATACAGACAAGAGCTAAAAGAACTCGGTTATCCTGTAGGTAATTAATAAATATTGTCTTTATGGTTGGAAAACGTAATTTTTTATATTGTAAATATTAGATTAAAACAATAAGTTAATATCATACTTTTATTCTCGATAATACCTAATTTCATTAAATACGTTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTACGCATT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGGTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //