Array 1 4481-3113 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJV01000052.1 Geobacillus kaustophilus NBRC 102445, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 4480 30 100.0 34 .............................. GCTGCGCCTTCCGCGACAGCCGACAAGCACGGAA 4416 30 100.0 37 .............................. ACTTTTTTCGGATATTCAACGCCATATTCATCGGCAA 4349 30 100.0 34 .............................. GTAAAAGTTTATACTATTGATAGACAGCGCTTCA 4285 30 100.0 38 .............................. ACCGTTGCCGTCAATTGTTTGAGTCGGCCAAGTCCTCC 4217 30 100.0 37 .............................. TGGGAGGAATTAGGGCGACCGGGGGAGTAGTTTTCCC 4150 30 100.0 37 .............................. GGATTACGTCGCCTATCGTGTTTTGTCTGTATTCTTT 4083 30 100.0 40 .............................. ATTTTGACGCTCTTGAGAAGATCGCGGATGTTTCGCGTGT 4013 30 100.0 36 .............................. TCTTGCAGGTCTTATCACTACTGATGGTTACATCGA 3947 30 100.0 35 .............................. TGTGTTTGTGTCCATTCTTCAATAGATAAAACAGG 3882 30 100.0 36 .............................. TGAAGAGAAGCTTGCCGCTGAGAGCGCCAGAAGCAA 3816 30 100.0 39 .............................. TGATCGCTCTGGCCGCAGTTAACTTATTAAATTTATCGA 3747 30 100.0 34 .............................. TGAAAATCAGCAGATATTGCAAAAGCTCGAGGAA 3683 30 100.0 39 .............................. GAGTAGTTCGTTCGCGATTCCATATAAACGTCTTGCCCC 3614 30 100.0 39 .............................. CGGGTTTTGTTGGTTCCGGAAAGTCGTACAATGCTACAC 3545 30 100.0 36 .............................. TGTGTCGTGGGGAAAAGAAGTACATTGAGCCGCGTT 3479 30 100.0 38 .............................. AAGATATTGCGATCAACGAGGCGGTCGAACTGGATAAG 3411 30 100.0 40 .............................. ACGGACGAGATGCCCGTAAACAAACCTGTTTTGGCTTTCA 3341 30 100.0 38 .............................. TCTTGTCCGGCTTCGAAGCCGAAAACCAGCCAAGATTC 3273 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 3206 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 3141 29 73.3 0 ......G...CG.....A..A.GC-..... | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCACGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : CCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTTGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGCG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 84134-85640 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBJV01000013.1 Geobacillus kaustophilus NBRC 102445, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 84134 30 100.0 35 .............................. ATTTCCAGGTTCACTTGCCGAACTTGGTCGGATGT 84199 30 100.0 37 .............................. AAATACAGCTCCGGGCTGATAAGCAACTTTCTTGTCA 84266 30 100.0 37 .............................. AAATCCGAACAGTTCCTGCAACAAGTCGCATACGGCC 84333 30 100.0 35 .............................. ATTGGCAAACGGACGAGTGACGGCCAGCGTAAATG 84398 30 100.0 35 .............................. TTGTTTGTGTTCCTCGATCAGCTGACGGGCTGATT 84463 30 100.0 38 .............................. TTCTTCCGATTTGAGCGCCTCTTTCTTTTCCATTTCTA 84531 30 100.0 35 .............................. AATGGGGAAGCAGGGGAAGCGGCGGACATTTTGAA 84596 30 100.0 39 .............................. AAAAATGTTTTTTGCCATATCAATCGCCAACTTCATTGA 84665 30 100.0 35 .............................. GACGACGAGTTCCGCAAACGAGATGTGGAACTTGT 84730 30 100.0 35 .............................. GCAATATCGCTAGCATTGAAGTCACCTTCTCCGAC 84795 30 100.0 35 .............................. ATTGCTGCCCAACAAGCACGAACCGGTTGCCATTC 84860 30 100.0 38 .............................. GTAACAGTTTCGCCGTTTTCTCCGGCAAGTCGGCTTCC 84928 30 100.0 35 .............................. CAACAAATCGCCTACGGTCACGTCATCGGTCTTGA 84993 30 100.0 39 .............................. CTCGCTTTCACATTGCGAGCGTCAAAATCCATTTTCACA 85062 30 100.0 35 .............................. GTATTTTTGGAGCGTCGTAAATAACCCGCTCCCAC 85127 30 100.0 34 .............................. CTGTAGATGAAAACAGCGTGGACGTATGGCAAAG 85191 30 100.0 39 .............................. CCTAATGTCCGATAACAGCCTACCAATCCCAATCCGTCA 85260 30 100.0 38 .............................. ACGACGATCATTCAGGATTTGAAGCAAACCGCAAAAGA 85328 30 100.0 121 .............................. AGTTGTGAATATGCGTCAAGGCCATTCCTGTGCATGGAGTGAATCCTTTGACACATAGTACGATGACTGGCTTTTCATAGAAGAAGAAACAAGAATGCTTCTTCTTTACGCCAAAATAAAG 85479 30 100.0 35 .............................. TATGCAGAAACTCAGCGCATAAATCAGAGTGATTA 85544 30 100.0 37 .............................. ATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 85611 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 22 30 99.4 40 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCAACCCGTCCCTTTCCGACGATATCGTCCGTGTCGCCCGTTCGCCGATCCGCAAGCTCGGGCCGAACGACCGGCTCATCGCTCCGGCGACGCAATACTGCACACTATTTGGCAGCGTTCCTGCTGGTCTCGCCAAAGGAATTGCCGCGCTGTTGCGCTTTGATGATGCGAGCGATGCAGAAGCCGCCGCTCTGCAACAAACGATCGCACACCACGGAATCGAAGGAGCGCTTCGGCAATACGCGGGGCTTGAGAGTGCGCACCCGCTTGTGGCCGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGG # Right flank : CGCTATACAGTACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATGGAATGGCTATTGACCACGACCGGTTGTTTAAAGAACTGATCCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCATGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAAGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //