Array 1 187924-184118 **** Predicted by CRISPRDetect 2.4 *** >NZ_NICI01000004.1 Klebsiella pneumoniae strain AUH-KIMP192 NODE_4_length_437151_cov_72.1634_ID_2455, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 187923 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 187864 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 187803 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 187742 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 187681 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 187620 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 187559 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 187498 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 187437 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 187376 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 187315 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 187254 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 187193 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 187132 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 187071 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 187010 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 186949 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 186888 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 186827 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 186766 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 186705 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 186644 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 186583 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 186522 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 186461 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 186400 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 186339 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 186278 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 186217 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 186156 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 186095 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 186034 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 185973 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 185912 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 185851 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 185790 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 185729 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 185668 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 185607 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 185546 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 185485 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 185424 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 185363 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 185302 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 185241 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 185180 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 185119 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 185058 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 184997 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 184936 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 184875 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 184814 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 184753 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 184692 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 184631 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 184570 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 184509 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 184448 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 184387 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 184326 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 184265 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 184204 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 184146 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 45-298 **** Predicted by CRISPRDetect 2.4 *** >NZ_NICI01000078.1 Klebsiella pneumoniae strain AUH-KIMP192 NODE_78_length_345_cov_0.844037_ID_2603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 45 36 100.0 35 .................................... TCGGGGAGCCGATCAGCGACCACCGCACCCTGTCA 116 36 100.0 38 .................................... TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAA 190 36 97.2 37 ............................G....... AGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 263 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 99.3 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CGGAAACAGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCGG # Right flank : TCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTCAGACCC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //