Array 1 744231-736697 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035704.1 Pseudolysobacter antarcticus strain AQ6-296 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 744230 28 100.0 32 ............................ AAGTAGAAAATTTCTAAGCGGCTTTTGATACG 744170 28 100.0 32 ............................ AGCGCGGTGATTAGCAGCGAGCAAATGCCGAC 744110 28 100.0 32 ............................ ACACGGCACACAATCGGTGTGCGAATAAAGCG 744050 28 100.0 32 ............................ CTAGTCAGACAGGCTAGCTATCAAGGAGCATA 743990 28 100.0 32 ............................ TTGGTTGACATGCTCGCCCTCGCTATCAATCA 743930 28 100.0 32 ............................ GCGTGCAAGTTTCCCCTCGCTTTGCAACTTTG 743870 28 100.0 32 ............................ AGTAGGCACGTCCGTTTATACCCTGGTGACGC 743810 28 100.0 32 ............................ AGGGACGAACCGTTGCAGCTCAATCGACCATG 743750 28 100.0 32 ............................ GAGAACTTGCTGCAGGATTACACGCAAGTGGA 743690 28 100.0 32 ............................ GCTGCTTTGACATCCTGCCGCCACGGCTTCAC 743630 28 100.0 32 ............................ AGTAAAGGCCCAGCGCTAAGCACTGAAAGATG 743570 28 100.0 32 ............................ ATCATCGCGCGTGATGCAGAAGTGCATGGCGA 743510 28 100.0 32 ............................ CGCAAAGGTGTTTGGCTGAGCGCCGAAGAATG 743450 28 100.0 32 ............................ TACTTGCAGAAACAGGAAAATCTGGCTGCAAC 743390 28 100.0 32 ............................ AATGGATCAGCCGCGTGGGCTTCGGAACTGCC 743330 28 100.0 32 ............................ ATCATAGGCCGATGTTCCAGCAGCGCCACCGC 743270 28 100.0 32 ............................ GTCTGGTGAAAGGTGCGGAGCGCGAAGGCGCA 743210 28 100.0 32 ............................ TTGGAAATCCGTATAGGCTTTCTGCTCGATCG 743150 28 100.0 32 ............................ ATCAAGAGTTCGGCGCGCCCGATGGGTGACGC 743090 28 100.0 32 ............................ ATATCTTTGATGCGCTCAAGCGCGTGCGCAGG 743030 28 100.0 32 ............................ CTAGCCGTACGTGTTGCGTAACCTAGTCCCGT 742970 28 100.0 32 ............................ TATCCCGTCTGCTGGCTCTAGTCATATTTTCG 742910 28 100.0 32 ............................ TAACGTGCCATCTTTTCTGTCTGCTATCACTT 742850 28 100.0 32 ............................ CATGCAACAAGCCACGCAACGATGCTCGGGTG 742790 28 100.0 32 ............................ AATTCCGAGCGCACCGAGGACACCGATCACAA 742730 28 100.0 32 ............................ CCACCCATTCACACAGCGCTGATCGGCGCAGA 742670 28 100.0 32 ............................ ACGCCGCATGGTCACGTGTACGCGCTGGTGAT 742610 28 100.0 32 ............................ GCTATCGAGGATGCATTCAAGTGACCGGCAAC 742550 28 100.0 32 ............................ TTGAGCGAGCCGTTCATCGTCAAGACCGAGTT 742490 28 100.0 32 ............................ TTCAACGTATACAACCATACCGGCACCACCAC 742430 28 100.0 32 ............................ GATGCTCCAATACTTGCTGTGGTCGACCCACG 742370 28 100.0 32 ............................ GTAGTCGCCGCCGCGTTGCTGGCGATGCCGCT 742310 28 100.0 32 ............................ TCAATTTCCGAAGGCACGACCGAGCCATACCG 742250 28 100.0 32 ............................ ATCTGCGTGATGCTCAGCGCCATGACCCAAGC 742190 28 100.0 32 ............................ TGCCACCAGCCGCCGTAGGCGTTGCTGCCCTC 742130 28 100.0 32 ............................ AGATGGCGGCGCTGCTGAACTGCGGCAAGCAT 742070 28 100.0 32 ............................ AACTCTTCGCCATTCTCTTCGTCCCATGCCTC 742010 28 100.0 32 ............................ ACGTTGCCGCTGTCGGCACAAGACAACGCACG 741950 28 100.0 32 ............................ ATAGATGGGTATGTGCCGCTGAGTGATGATGA 741890 28 100.0 32 ............................ GTCAAAATTGAGAATCAATATAGTCCCGGATG 741830 28 100.0 32 ............................ TATAAACCCGCAAAGTATGCCCGCCAGCGCGC 741770 28 100.0 32 ............................ TGGACTGCATGCGAGGTCGAAAGCGTGGCTGT 741710 28 100.0 32 ............................ TTGCTGCACAATGATGTGTATAGGTTCTCGTT 741650 28 100.0 32 ............................ CGATAAATTCCACGCTGATGACTCGGTCAATT 741590 28 100.0 32 ............................ TATCGGCTGTCATACACCACGTCCACTGCGGC 741530 28 100.0 32 ............................ AGCTGCGCATCCGCCTCGGCGGATTCGACCAA 741470 28 100.0 32 ............................ ATCAGCCACTGCGCCACCTGGTCGGCGGTGAG 741410 28 100.0 32 ............................ TTGCTGACGAGGTGGCCGGATGAGCGCGTTCG 741350 28 100.0 32 ............................ GGCCGTGAAATTCGCGACGACTTTACCCACCG 741290 28 100.0 32 ............................ TACGTTGGCGGCGTGGCTGAGCTGCCCCGTCA 741230 28 100.0 32 ............................ TGCGAACCATACGTCGCAAAAAAGATTCAGGA 741170 28 100.0 32 ............................ ATTGCTGCCCGGCCCGGTGACAAGCGACAACC 741110 28 100.0 32 ............................ AACGGATCTACCGGCGTCGCCATCGAAGGAAA 741050 28 100.0 32 ............................ TGAAATTCAAGCCGCTTAAATACACCGACTTT 740990 28 100.0 32 ............................ GCTACAGCGCGCGATGTATATCGGCGAATACA 740930 28 100.0 32 ............................ CGAATGTCACAGTGACCGATCCGACGCCAGCC 740870 28 100.0 32 ............................ CCGACGTCGTCGAAGGTTTGTTCACCGCGTTC 740810 28 100.0 32 ............................ TATAGACTGGCGCACTACGCGGCTGGCGATTG 740750 28 100.0 32 ............................ TTAACGCGTGTGCGGCGGCATTGCCCGATTGT 740690 28 100.0 32 ............................ TGAAGAAAGATCTCCGCAGCGCTACAGATACG 740630 28 100.0 32 ............................ ACTTCTTGAACAGCTTGGATGCGTAATCGGGC 740570 28 100.0 32 ............................ ACGACGGAGATATACACGCATCTGGTTCCTGA 740510 28 100.0 32 ............................ ACCGGCGCGAGTGGGCCATAAAGGCGGCTATC 740450 28 100.0 32 ............................ GGTTGTCCAGGTGATCACAATGCTGCCTACGT 740390 28 100.0 32 ............................ TGTGACACCCACTTGACATCGGGACACATTTC 740330 28 100.0 32 ............................ TGCGCATCCGGGGTCATCCCCGTGCGGTAGCC 740270 28 100.0 32 ............................ ATGTCTTGAGTACGGCTTCGATTTCCGCAGGT 740210 28 100.0 32 ............................ TCATGGACGCTGGCCACATCGCGCCCGGACAT 740150 28 100.0 32 ............................ GACACCAAAGGTGCTGCGGTTGACCTCAAAGG 740090 28 100.0 32 ............................ AATCAGCACGTGTATCCAACAGACGAGCAGCA 740030 28 100.0 32 ............................ CTAAGCGTTGTTGCTGTTGATCGGATCTTCGT 739970 28 100.0 32 ............................ GTTCGACACTACTGCTAGCCGCACTTGCTTTC 739910 28 100.0 32 ............................ TGGCAGAGCGTTACGGTTTGATCGGCGCACGA 739850 28 100.0 32 ............................ GCAACGCGGGCAGTTAGCGCATCGATAGAATC 739790 28 100.0 32 ............................ GTCGAGCGCGTACACTCGCTGCGCCGCTTTGG 739730 28 100.0 32 ............................ GTTTCCCCGGCGGCCGCGGCGAAACCTACGAT 739670 28 100.0 32 ............................ AAAGTGTGGCCGCTCGGAGGGCTTGTGCTCGG 739610 28 100.0 32 ............................ TTCCCGTGCTATTGCATTTCGCGCAAGTAATC 739550 28 100.0 32 ............................ AGTACCATGTGCGATTTTCAGGATCGACATAG 739490 28 100.0 32 ............................ TCGTAAAATGCCCGTTTTGCGGCACCCCGCAC 739430 28 100.0 32 ............................ ACGAGAATATCAGCCGTCGCTGCCCGGATGCC 739370 28 100.0 32 ............................ GATGCAGATCCGCGTGAGCGGTGATGCGCCGA 739310 28 100.0 32 ............................ ACTTACAAAATCACATTGAGCGACCGCGTTGG 739250 28 100.0 32 ............................ GTGCTCGGTATGGATCAGCGCAAGATAGAGGC 739190 28 100.0 32 ............................ AGGAAACACGCCATACCCTACCGCAGCCGAAA 739130 28 100.0 32 ............................ ATATGCCGACGTTCGTGCATACCTTGACGCCA 739070 28 100.0 32 ............................ ACGATCTACGTTGACAAAGCCATACCTGCTAC 739010 28 100.0 32 ............................ ACTGGTGGTCGAAGAAAGGGAAGGAGAAATGA 738950 28 100.0 32 ............................ GTCAGGAGAAAGACGTGAACCACGAAGACCAT 738890 28 100.0 32 ............................ ATGACCGACCAGCACAATGAAATGCCCGATCG 738830 28 100.0 32 ............................ TACGGCCAGCGGCTCTGGAATAAGCGCGCGCG 738770 28 100.0 32 ............................ ATCACCCATGTTGTTGAGGATCAGGGCGCATT 738710 28 100.0 32 ............................ CACGGAAAAGCCCATACCGCCGCCGCTCCCAG 738650 28 100.0 32 ............................ ATGTCGCCGCCGCAAAGCATCGCTGGGTTCGC 738590 28 100.0 32 ............................ TTCCGAGTCGAAGCCTTTCATCGTCATCTCGA 738530 28 100.0 32 ............................ TTGAATTCCGAGGTCACCGTGGTGACCAGGTC 738470 28 100.0 32 ............................ GTTGCCGCCCGGATGCCCCCGCGCCCGTTCTG 738410 28 100.0 32 ............................ AGTAAAATGCGCCGCGCGTTCTGCTGCGCCTA 738350 28 100.0 32 ............................ TTCCAAAGCCCCCCGGTAAGCTTCAACCTGCT 738290 28 100.0 32 ............................ TGAGCGGCTGATTAGAGCCAGCGCGCGCATCG 738230 28 100.0 32 ............................ AATTCGTCAAACCGCGCGTGTGCGTCGCGCAT 738170 28 100.0 32 ............................ AGAAGCGTACGTTCGCGGTGTTTCCCATGGAG 738110 28 100.0 32 ............................ GTCACGCGCCAGATCACCGCGCACGCCGGCGT 738050 28 100.0 32 ............................ AGTGGTAGTGCATGCGCTGCACCGGGCGCAGG 737990 28 100.0 32 ............................ ACGTTTGTCGCGCGCGTGCTTATACCCCGACC 737930 28 96.4 32 .......A.................... GCCAACCGGGGGCGATTGCACCGCGACACCAT 737870 28 100.0 32 ............................ ACCGGGCGGACATACGAAGGTAACGGCTTTTC 737810 28 100.0 33 ............................ CAGGTGCTGCCGCCAACCGGGAGCACGGTGTGT 737749 28 100.0 32 ............................ GGACGATGTTTGTGGCGTCGATTACGCGCAGT 737689 28 100.0 32 ............................ GCCCACAGCGTGCCGGGCAAGCGCCATAGGCT 737629 28 96.4 32 ...........T................ ACATTGAAAATCATCTTGAGCAGGTAACGCAT 737569 28 100.0 32 ............................ AAGGGCGCCACATGCTTGCGGGCGGCGGAAGC 737509 28 100.0 32 ............................ TTCACGTCGTCGAGGCGTGTGATGACGGATGC 737449 28 100.0 32 ............................ TTGAGGCCCAAAGCGGCGACGAAGAGTAAAGG 737389 28 100.0 32 ............................ GGTATCACGTCGCAAATCACTTCAGGCTCAAC 737329 28 100.0 32 ............................ CATCGCCATGACGGGCTTGAGTGCAGCAGTAA 737269 28 100.0 32 ............................ TGCACTGCGACAGCGACAGCATCCGCCCCATC 737209 28 100.0 32 ............................ GGTTGAAACGATAAGCCACGGCGAGTGGTGTC 737149 28 100.0 37 ............................ GATTGCGCTCCGCGCGTGCAAAAATACCCATCAAATG 737084 28 89.3 32 ....A.......GC.............. ATCATCCATTGGCCGGGCGGAAAGCGCAGGCT 737024 28 89.3 32 ....A.......GC.............. AAGTCGTACTCGGTGATCGCCACGTAGCGAAA 736964 28 89.3 32 ....A.......GC.............. ATTATCGGAGCCTTGAAAGTTGTGCGTTGACT 736904 28 89.3 32 ....A.......GC.............. AGTTGATGCCGATCTCGGTGGCGCCCCACTGC 736844 28 89.3 32 ....A.......GC.............. TTGATGTCGATCACGAGCGGCTTGCCGGTGGT 736784 28 89.3 32 ....A.......GC.............. ACACTGATAGCGGTCGACACATCCACACGATC 736724 28 89.3 0 ....A.......GC.............. | ========== ====== ====== ====== ============================ ===================================== ================== 126 28 99.3 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CACCAGTAATCGCTGGTTGTCCTTCGCTCGCGCACTCAAGGGGCGTTTGCACCACGCATGAAAACCGCTGCTCGATACCTTCAGGCATCGACACATCAGTTGCACGGGATAGACCGTGCGGCAGCGCTGGATCGTCTGAAACTTCAACGCGATTCCTTCGCGAAGAACGCTGCCGCATCGCGCAAAAAATCGCGTTCCTTCTTGACCCGCGCCAGCTCACGCTTGAGTGCGGCCATCTCTTCATCCCGCGGTACGCCAGAGCCCGGGAAAGCGTGGCGTTTACCGCTGGCCAATTCCCGCCGCCAACGGCTCAGCACCCCTTCACCCACACCGATATCGCGAGCTATCTGGCTAACATTGGCACCGGCCTGATGAGTCAGACCCACTGCCTCCCGTTTGAACTCATCACTAAATGTTCTTCGCTTGGACATGACACTCCTTTTTGCCGATCATCGGCCTTGTTGGAAGTGTCCGCCATAACGGGGTAGAACCCTCTTGGT # Right flank : TCATCGCCGACGCGTGCCACTAATTTTTCCCGTTGGCAAACCACACTTCAAATTGCTTTTCCGGAACCGTCACACCCGGCGTCTTTCCCACGAAATCTTTGACGTTGAATTTCCCTAGGTTAGCGGTCGTCAGTTGCAGAGCAAGGGCCTCTGCCCTCGCCTTATCATCATCGTGGAAATAACGAACCTCATCGGTGTTAGGCACCAAATTCACGATCTGAAGATCAGGCACGTTGTAGTGCAGCGCTTTAAGCGTTTGGATGGCGGCTTGACCGGTCTCTTTAGGTGCGTGATCCGACACCTGCACGAAGACGCGGGGCGCGATAGCCTTGTCGTACTGCGCTTGCGCGTCTGTCAGCTGCTTAAGCGTAGTTTCCGCACCTTTCGAGCCTGCCGCCGATGCCTCGCTCAAATACGGCCTCGCATCAGCGAAACGGCCTTCCGCAAAATACAGGTATCCGAGATTGCTATTTGCCCGCATCAAGGACTGAGGGTTCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 745875-745487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP035704.1 Pseudolysobacter antarcticus strain AQ6-296 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 745874 28 100.0 32 ............................ AATGCGCGAAGCGGCGGTGGACTCACACTGTT 745814 28 100.0 32 ............................ AGTAGTCGCAAAACCGTTGAACCGGCGCCGAC 745754 28 100.0 32 ............................ TGATGGATTGGTGGCGCTGTCACAACGGTGAG 745694 28 100.0 32 ............................ TGTGAGGTTGCGCTCAAGCTCCCGTAATTTAT 745634 28 100.0 32 ............................ ACCAATCCATCAGGAGGTCGCCTCGCTTGAAA 745574 28 100.0 32 ............................ ATTTCGCGATAGAAACTGTCGTAAACCTCTGC 745514 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCGCTGCCGCATAGGCAGCTCAGAAA # Left flank : CAAGATCTTCTGGCGTTGGACGCTACGAATTGGCTCACGGGAATGCGTGACCATATTCATTTGTCTCCTATCTCGCCCGTTCCGGAATCCACAAAATTTCAGGTGTTCAAACGCCGGCAATTCAAGACAAACGCTGATCGTCTACGCAGGCGGCGAATGGCACGAAAAGGGGAAACCTACGAACAGGCAGTTTCCGCAATACCATCGTCGGTTGAACGGGAACCGGATCTGCCGTACTTGAACCTGCGAAGCCACAGCACCGGACAACGCTTTTGTCTTTTCGTCGAACTCGGCAATCGAACGGATCGCCCCACGGAAGGCATTTTCAATTGCTATGGATTGAGTCAGAACGCAACGGTTCCTTGGTTCTGACCCTTTCCGAAAGGAAATTTTTCTCTCTTGCAAAATCAGCAGCTTGGCTGCCCCTGAAAAATTTGGGGTAGCCAAGCTATATGCGCCACGTTCATTGAAAACATAGGGAATATATTTACACCGCTCTA # Right flank : GCAATTTCGTTGTGCGGAATGCTGCTCTGGGTTCTACCCCGTTTTGGCGGACGGTTGAGTTAAGGTTATAAATCTTTGGTCTAGCTTATCAAGTCGTCGTTGCATACGTGGGTTGTGGAAGCGCTCGATATAGTCAAAAACATCCGAGCGTGCGTCGGCCAGTGACAGGTAACGACGGCGATAAATGCGCTCGCGCTTGAGCATACCGAAGAATCCCTCGGCGGCAGCATTGTCGCCACAGTGGCCCACATCACTCATGCTGCTGATGAGGTGGTGATCGGCGAGGAAGCGTTGATATTCGCCGCTGGTGAATTGGGTTCCTCGATCTGAATGCAGCACCACGGGCGTGGTGTCCGTTCGCTGCCAGCAGGCCATCTGCACCGCCTTGAGAACCAGGTGACGATCCTGGATACCCGACATGGACCAACCAATGATCGTGTGGCTGAACAGGTCGAGCACCGTGCAGAGGTAGAGCCAGCCTTCGCCGGTGTGGATGTAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //