Array 1 1028982-1030412 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051213.1 Salmonella enterica strain SCSW714 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1028982 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 1029043 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 1029104 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 1029165 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 1029226 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 1029287 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 1029348 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 1029409 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 1029470 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 1029531 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 1029592 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 1029653 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 1029714 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 1029775 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 1029836 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 1029897 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 1029958 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 1030019 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 1030080 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 1030141 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 1030202 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 1030263 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 1030324 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 1030385 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1047024-1048944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051213.1 Salmonella enterica strain SCSW714 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1047024 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 1047085 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 1047146 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 1047207 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 1047268 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 1047329 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 1047390 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 1047451 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 1047512 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 1047573 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 1047634 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 1047695 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 1047756 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 1047817 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 1047878 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 1047939 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 1048000 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 1048061 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 1048122 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 1048183 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 1048244 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 1048305 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 1048366 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 1048427 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 1048488 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 1048549 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 1048610 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 1048671 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 1048732 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 1048793 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 1048854 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 1048915 29 93.1 0 A...........T................ | A [1048941] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //