Array 1 63889-63005 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGU01000055.1 Gilliamella apicola strain HK7 Gilliamella_apicola_HK7_contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63888 29 100.0 33 ............................. ATTGATTGCGCATCCGTTAGTTATTTCGTGTAC 63826 29 100.0 32 ............................. TTGACATTAATGCATTTTTTACTAGATCTAGA 63765 29 100.0 32 ............................. AATGTTTGATTTTTTTAAATGATGTCTTATGG 63704 29 100.0 32 ............................. TCGTTAATTTAATAGATAAAATTACATTATCT 63643 29 100.0 32 ............................. GCAAAACTCGTTTTAGTAATCCCCACTTGTTA 63582 29 100.0 32 ............................. CTCGGCGAGGAGAAACGGGTAGAGGTGGTCCA 63521 29 100.0 32 ............................. CGATGTTTTATTATCTGCAATAACAATAAAAC 63460 29 100.0 32 ............................. CTGTCACAGACGAAACTGTGACATTAAATGAT 63399 29 100.0 32 ............................. GGGGTTGCGTCCATAATGTTTTTTTGTTCTAA 63338 29 100.0 32 ............................. CCTCCAAACTGAAAGGCTTTACTCTTATGTGG 63277 29 100.0 32 ............................. CGTTTACTCCATTTCTCATCGACCCAAACATT 63216 29 100.0 32 ............................. AAATAATCGATTTTGATTAATTAATAACCTTA 63155 29 100.0 32 ............................. CCCTCAGATTTGGTGCCAGAATCAGAAATCGA 63094 29 100.0 32 ............................. GTCTTTACGAACACAATATTAGGCCTGCCGTA 63033 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCTGTAGGTACAGGGATAAACCG # Left flank : CTTATTGAAGAAGTTTTGTCAGCCGGTGGCATTGAACCACCACCGCCTCCAGACAATGTTCAACCCCCCGCTATTCCCGAACCTCAATCTCTTGCCGATAGCGGTTTTAGGAGTCGCTAATAATGAGTATGTGTGTTGTTGTAACTGAAAATGTTCCAGCTCGATTACGAGGCCGTTTAGCCATTTGGTTACTTGAAATTAGGGCAGGGGTTTATATTGGTGATATATCAAGACCGATAAGAGAAATGATATGGCAACAAATTGTTAAACTCGCAGAAGACGGTAATGTTGTCCTTGCCTGGGCAACTAATACTGAATCAGGATTTGATTTTCAAACCTATGGTACCAATAGAAGAGTTCCGGTAGATCTTGATGGGCTACGCTTAGTATCATTTTTACCTATTAAAAATCAATAAGTTAATGTTCTTTAAAAATTAGAAAAATTTGGTAGAATTTAATAGCAGATATAAGTTTAAATAAAACAAATATCTATATTTAGA # Right flank : ATAGAAATTTTATTGATATTTTTATCAAATTTGATATAATTATTAAAAATAACAAAACAGATTGATTAAATGTTTACGATAAAAACGCATGATGATGCTAAATCTGAAATTCTAGATTTACCCGCAGAATTAAGAGGTCGAACAATTAAATTGATTGAAAAACTAGAACAATTTGGACAAATGCAAATGCCACATAGTAAATCGTTGGGTGGTGGGTTGTTTGAATTGAGAGCGTTAGAGCGTAATAATATAGCTAGAACTATTTATGTTTATCAAAAAGAGCAAACGATTTTTATTTTACATGCGTTTGTTAAAAAAACACAAAAAACACCAGTTGGCGCAATGCAAATAGCGAGAATCCGACTGAAGGAGATGATTGAAAATGAATAAAAAACACAGCACAACATTTAATGAAATCAAAGATATCGCGCTAGCAGATCCTGTAGCGCGTGCGGCATATGATGATGCAGAGGACGAGTGGAAATTACGTGAATTATTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTAGGTACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [88.3-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 31490-30641 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZGU01000120.1 Gilliamella apicola strain HK7 Gilliamella_apicola_HK7_contig83, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================================================================================================================== ================== 31489 26 100.0 35 .......................... CCGTGTTACACGATAATCAGCGGAATAAATGACAT 31428 26 100.0 35 .......................... CCGCGTCAGGAGCTAGAGCGGACAGACCTGAATTA 31367 26 100.0 36 .......................... CCGTCTTTAATATTGTGAAAATAGAACGCTACATTT 31305 26 100.0 35 .......................... CCGTATACTTTCGGATATTTTTCTCCTGAACGATT 31244 26 100.0 35 .......................... CCGCGGTGGAAAATGTCACGAGTGGCGCTATTGTC 31183 26 100.0 35 .......................... CCGAAACGGTCAATACAATAGAGGTCTAATAAAAA 31122 26 96.2 35 .............G............ CCGCAATCTCTCACCGCGTTAATCTAGTTGGTTAT 31061 26 96.2 35 .............G............ CCGAAAAAGGAGAAGACAGTGCAAACAGTAAAAAT 31000 26 96.2 35 .............G............ CCGCTGATGCAAAAAATGGCTCAGGGCAACGTCAA 30939 26 100.0 123 .......................... CCAGAAGATGACTAATGACTAAACATTCTAAAACGATTGCAGATTTAGAGTCTGCTATGCTCAATACAGAAAAATCAAAAAAAGCGTTCGAAGCTGCAGAATATGAATGGCGATTAAAAGAGC 30790 26 88.5 35 .......T....C.....A....... CTGGTCAAGAATCAAGTTCATCTTCAGGAGAAGGT 30729 26 80.8 36 ........C..G..A.T.A....... TATATTTAATTTTTAATGTGTTTTTTTACTTGTTGG 30666 26 73.1 0 CATA.....A........A.....T. | ========== ====== ====== ====== ========================== =========================================================================================================================== ================== 13 26 94.7 43 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAACACACGCATTTTAAAGCGCATAGGAACCGAATACCCCTCTAAATCAGCAGGTATTGACGGCGCACCAATGGATTTTAATTACCGTCAGTATTTAACAGAAGATGAAGCGCAGATTGTTGATAATGCTGTTTTAAGGCTCAAAGCGGATAATATTGAATATTGGGCGGTATTAACCTCTTTTTATCTACGTGACATTTCATGCAGTAAGCAAGCAAAAATATTAGGTAAGCAAACAACAGAAATGACAAAAATATTATTAGCAGCAGAATGTTTTATACGGGGGCACATTATTGAATTATTCCCAAAAGTGGCGTAGATAACCATGATTATAAAAAAAGGTATTTTGGATTGTTAATTAAAATTTATTTAAAACAAAATGTTATGTCTGATATAATCTAATTGGTCGTTGAATAAGCGGTTTAGCAAAAGCGCTTAAAAATTGGTAGAAAATTTTAGTTAATTATTTTATTTATAAAACAAATAGTTATAATTAGA # Right flank : CCCGTGCTTTTAGAAGCAATGAGTGAACTTCGCCCCAAAATGGACAAATGCCATGCCAGTTAAATATAAGTATGTCAGGTTATTACCAAACGTGGACCCAAATTAAATGGGCTATTTAGTTATATCAAAACATCTGATTAGCGATATAAAGTACGTTTAGGTGTAGCTTAGTGTACGATATCAGGAACAAAGGCTATGATATAACAGAAAAACGGCAAATCGGGCATGATAAAAGTCATTCAGAAAACCTATTGATTTTATTGAGGTTTTTAAGTGGTGGTGAAAGGTGACATTAATGTTTTTACCACAAAACTACCTTAGTTTAATTCTATGCCTAAAATTATTCATACACTAGAAATGGAGCTACAAATTATAGTAATAAAAAAAGCGTGAAATATACAATAAAACACTTGACTGTTTAAACGTTTAAATATATGATATGCGCATGATGCGGTTTTGAGCGCACAGAATTTAAGTCCACTAAAATAGTTGGGCTTTTT # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.67, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //