Array 1 357831-358059 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUX01000001.1 Gardnerella vaginalis strain UGent 09.07 NODE_1_length_712906_cov_419.920699, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 357831 36 100.0 28 .................................... GCCGAAGCAGAATACTTTGTAAATACTG 357895 36 100.0 29 .................................... CTCAAGCATCGGTGGAATCATATTTCTAT 357960 36 100.0 28 .................................... TTGTTGAGCGTCCTGTTTATGATGCTGG 358024 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 4 36 100.0 32 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACAATTCCTAGCGCTTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGACATGGAAGACTTTCGAGTACCACAATTTGTAAGGAGTGAATTATGAAAGTCGATGAGGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCAGTGAAAACAAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGGTATGCAATGGTACAATTTTCTGTGTATGTCCGTTATAGCCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCTCCACGTGGATCAATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAACGTTATTACAATGCCAGGCAAGAAAAGAAAGAGGAGGCTCCCGATATTGCTATGCTTTTTTAATCATAAAATGTCTTATAATGGTTGGAATTCTACCATTCTTGATGATATAC # Right flank : CCAATAAATAAAAACGGGGAAGCTGGAAAGCTTCCCCTGCAGTAATAATCATTAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCACTTCTAATATATCATCTTTAAGAAATAAAAAACAAGTGGACTTTTTTAAGTTTTGTTAAAATATTTGAAAAATTAACATATCAATGTGATTGATGGATAGTGTAGTTGAAAATGTTATTACTTTTCGAATGCATGTGTTTTCTAAAAACTGCATTCGTGAAATGTATGTATGTAGGTTTTATGTAAACAGCATCCATATATTCATAATGGGAACGTTACTAAGGTAGCATTCCCATTATGTTTTTTATAATATGCGACTTATATGCGATTTACCAAATGTGTACGCGCTCGCTTGGAGCAAGCCACATCTCGTCGCCTTCTTTAACATCGAATGCATTGTAGAACAAGTCAACGTTTCTAGCAATGCCGTTAGTGCGGCACTCTGCAGGGGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 679217-677113 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJUX01000001.1 Gardnerella vaginalis strain UGent 09.07 NODE_1_length_712906_cov_419.920699, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 679216 29 100.0 32 ............................. TGATTGTATAGCATGCCGTTCATAGGGTCAAA 679155 29 100.0 32 ............................. GGAAGAACGAAAAGCTGATGACGTAAGTATCA 679094 29 100.0 32 ............................. GGTGTTAAAAATAGTAAATGACTCTGCAACTT 679033 29 100.0 32 ............................. GAACTTGATAAGCGTGTTACTAATAATCAGCA 678972 29 100.0 32 ............................. TGATTTACACGATGAAACAGCGGCGCGTATTG 678911 29 100.0 32 ............................. CTGATGGTTTTAATCGTGGTAAGCCGTTTGTG 678850 29 100.0 32 ............................. AGCATTTGTTTTATGCGTGCTTTATGTAAAAA 678789 29 96.6 32 ............................T ATCGTGCACAACTTGAAACTGCAGGACTAATA 678728 29 100.0 32 ............................. TATTGCGCGAATGCGGATCAGGCGCGGGACCA 678667 29 100.0 32 ............................. AAACGCACGAGTATCGTCTACTTTTAAGCCGT 678606 29 100.0 32 ............................. TATGCAGACCATTTAATGACGCAAACGACGGA 678545 29 100.0 33 ............................. CTGCGCTTGATACAGCTGCTGCACTTTCGTCAA 678483 29 100.0 32 ............................. CATAGTTGAATAATACGTGTTAGGTTGTTTCT 678422 29 100.0 32 ............................. ACTCGCACAGTTAGAGCAGCTATCTTTAACGC 678361 29 100.0 32 ............................. TGTTCCTAGTTGTAAAAGCATCTGCAAGTCGT 678300 29 96.6 32 ............................T CAGCTGGCACGGCTGCGATATTGATGCTTGAC 678239 29 100.0 32 ............................. CCAAATGCTTTGTGTTACATGCGTGCTTTATG 678178 29 100.0 32 ............................. AAATTCTGTAAACTTTGCTGGCAAAATCTCTA 678117 29 100.0 32 ............................. GTAATAAAGGGCAAGCCTACAATGAGCGCAAG 678056 29 100.0 32 ............................. CGAACAGAACGCATTCGCAAGTAATAACACAG 677995 29 100.0 32 ............................. ACGCCCGAATTGGGTATACTAAGTGTGTCGTT 677934 29 96.6 32 ............................T CTTGCTCACGTAGGGCTTTTATTCCTTTCACT 677873 29 100.0 32 ............................. GAGTTGAGCGGCAAAGTCGAACATGAAACACA 677812 29 100.0 32 ............................. AAATTCTGTAAACTTTGCTGGCAAAATCTCTA 677751 29 100.0 32 ............................. GTAATAAAGGGCAAGCCTACAATGAGCGCAAG 677690 29 100.0 32 ............................. CGAACAGAACGCATTCGCAAGTAATAACACAG 677629 29 96.6 32 ............................G CTAGCACAAAATACCATAACGAAGGCTATTAT 677568 29 100.0 32 ............................. ACGCCCGAATTGGGTATACTAAGTGTGTCGTT 677507 29 96.6 32 ............................T CTTGCTCACGTAGGGCTTTTATTCCTTTCACT 677446 29 100.0 32 ............................. GAGTTGAGCGGCAAAGTCGAACATGAAACACA 677385 29 100.0 32 ............................. AAGGAGATTAAAAATGGTACTTATGATTCAAG 677324 29 100.0 32 ............................. AAGGAGATTAAAAATGGTACTTATGATTCAAG 677263 29 96.6 32 ............................T CGCAGACCACTATCCTTTAGAGCGCTTCGAGC 677202 29 96.6 32 ............................T CGTGGAGTTTTACGAATCCAGCTGGCGACTTG 677141 28 75.9 0 ..C..............T..A-.A.A..T | A [677116] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.6 32 GTATTTCCCGCATACGCGGGGGTGATCCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : ACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGCTGATTGTTTTTACAATAGGGTAGGCAAATAAAAAACTTGCCTACCCCTTATTTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGTCCCTTTCAGCTCTTGCCATGATGACGGCAACTCTACGGGGCGGTGTAGGCGACGCATTGCCCAATCGCGGATCGTGTCATAATCCCACGCGGGCTTTGTTGTTAGTACGCCGACTGAGTGTGTTGGTAGTGGGATTAAACCACGGAGGTTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGAGCGCACGAGATATTGGCGCATAGACTCGTAGCCGACGCCAAGAAGCCGCGCAATATCATGTAGTGATACGAGTACTGTTTGACCGTTCTCATCTAACATAATAGGCTCCTTTTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //