Array 1 75753-74920 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFNK01000071.1 Haemophilus sputorum CCUG 13788 contig00181, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75752 32 100.0 36 ................................ TATAGCGAGCTACAAGAAAATACGAAAATCCCGAAC 75684 32 100.0 35 ................................ ATTAAAAAAGCGGCTTGCCTCCGCTTTAGTCTCAA 75617 32 100.0 35 ................................ ACTTTACACCAGTAGTTGCTGGCGCTGGCGCAAAA 75550 32 100.0 36 ................................ GATAGGGATGCAAAAAAGGCCACCAATACTCCGCAC 75482 32 100.0 34 ................................ TTTTAAATGGTAAACAAGGAGAATCCATATGGAA 75416 32 100.0 35 ................................ CGTCATATAGCGATCACGCGCGTAAGAAGTTACCC 75349 32 100.0 34 ................................ CGGAAACAATTAACGCTACTCTTGATCAAGATGC 75283 32 100.0 33 ................................ TTCAATAACAACAGTTGTGATACGTTTTTGTTG 75218 32 96.9 34 .............A.................. CGTATGAATGGGCTTTATCTGAATTAGTCAAAGC 75152 32 96.9 35 .............A.................. TGGTTAGGCTATTACCATAGCCGCGCCCCTTGCTT 75085 32 96.9 35 .............A.................. TTTATATCTTGCTCGCATCCAATCAATATGGGAAA 75018 32 96.9 35 .............A.................. TTTGAGTAATGTCGAGCGTGCAAAGTTTGTCTCGC 74951 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.0 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCGAGCACGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGCGTGCGGGCGCAATATTCGGTATTTGAATGTGATGTCACGCCCGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAACCTACGACCCCACATGTGACAGTCTGCGTTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGCGCAAAACCGGCTGTTGATATATTTAAAGATATACTTGTCATTTAGTTCGCTAACCTATTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGAATAAGTTAATAATTTGTGTAACAACTAAATGTTAGTTATACTTCCTGATACTCCTTATATTTTAAAGGATAGCGAAATACAGTAAATAACTTACTGATTTTTATCATCTTTTTATATAGGGA # Right flank : TTGCCGATCAAGAGAAATTAAAAGCAATGTTTGATGCAGCCACCTTCGGGTGGCTATTTTTACTTAATTGATTAAGAAAGGAAAAACTATCTATATTTATTCCCCATACCCTTCACAAATTGCTTGCCAATCGGTTTCATTAAAATGAATACCTAAGCGGGTTTGCTCTTTGTGAAAAGAGCGAAGAAGGCGGTTGAGGTTGTCTTTTTTCCAAGCATCATTAGGTTGAATTTTACATTTGTCAAAATCAATCAGCCAACATTGACCTTTCTCATCAAGCAAGATGTTATGAATATTTAGATCAGTATGACAAACTTGGCGATCATGCATTGCACGAATGACCTTTCCAATTTGATGATATTGCGCAAGAGGAAGAGTAGCTTGTTGTAATAATTTGCTTAGGTCTTGCGTATTAGGAATCTTTTCAATCATAATTTCCGCACGATAATAGCAGTGATGTTTTTCAATTTGAAAAGCTATAGGCTGTGGAACAGGTAGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : GCAGCCGCCTTCGAGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17141-16245 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFNK01000004.1 Haemophilus sputorum CCUG 13788 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17140 35 91.7 30 .....T.G...-........................ TAATCGCACCTTGAGGATGACCTATGACAT AA,A [17131,17137] 17072 36 100.0 30 .................................... GATGTTGCATTACAGTACTCGCCACCAGTG 17006 36 100.0 30 .................................... AGCTATCCTTATACTACGTGGTTCTTTTTG 16940 36 97.2 30 .......T............................ AAAGCCCTTGCTGATACACTTACCGTATTT 16874 36 100.0 30 .................................... CCAGCTAGGTTCATTCCCTTTACTAACCAT 16808 36 100.0 30 .................................... TCTTTTACCTTTTTTAAGAGTTCATCATCA 16742 36 100.0 30 .................................... AAAGACTAACATTTATTCAATCAATCAGAA 16676 36 100.0 30 .................................... TCGGGTCTAGCTTGTATTATACGTTTTACA 16610 36 100.0 30 .................................... AATTTAAAAGAAGTTAAAAAGGTAAATAAA 16544 36 100.0 30 .................................... AAATTCAAAAGAGACATCATTAATCTTGAA 16478 36 100.0 30 .................................... GCGGACTAGCAATATTTGATACTGCTGTTC 16412 36 100.0 30 .................................... TAATGCTACACTTTTACTTGCAAGTAGTCA 16346 36 100.0 30 .................................... CCACATCTTTATCTGAACGTGTTTTACCGT 16280 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : GCGCAAGAAAACTTCGGTTACTTTTTTGGCTTAAACATCTGTGTGATGTTGCTACTCACTACGATAAATGGTCGATTCGTAACAAAAATTGGTTCAGAAAAGATGCTAAGAATTGGCTTGGGTATTCAGCTTATTAGCGGCCTCTTTTTAGCTTGTGTTGCCACCTTTAACCTTGGCTTCTGGGCAATGGCACTCAGCATTCCATTTTTTGTCGGCACAATATCCACCATTGGCAGCAACGCTACCGCCGCTATTTTAGAACGCTATCCAGAAATGGCTGGCACGGCTAACGCTATTGCAGGCACCGCTCGATTTGGTATTGGCTCACTCGCAGGCTTCTTGCTTTCTGGCTTTGAAATCCAAAGCGAACGCCCAATGCTCTATGCCATGGCACTTTGTACGATTCTCAGTTTTGCTGCTTACTATTTCCTTTCTTGTAAAGCAAGTAAATAATAAAAAATAACAAGCGGTCAATTTTGACCGCTTGTTTGCAATAAAGT # Right flank : TGGGACATTTAAAAGCCCCATACCGCAAGGTTTCGGGGCTTTTTTAGGCTTTTAAAAATGAGGCTAGAAAAGCAATAATTGATCTGAATTGACCTTTTTTTCTTGAAGTTTTTGCTCACCAACTAAAATTTCCATATTCGCAAATTGTTTCTCTGTAATAGCCAAACAACGAATTGAACCTTCTTCTGGCAAATGAGTAACTAACCTTTTATGGTGTTTTTCCATCGCATCTCGACCTCGAATAATCCGAGTATAAATAGAAAGTTGTAACATTTGATAACCGTCTTTTAATAGAAATTGGCGAAATTGGTTTGCAGCCCGCATTTTAGCTTTAGTAGTTACGGGTAAATCAAATAATACGATCATACGCATAAATATCTCCTTACTCATATTGATACTCCTGTAATTCGCAGATCTCTGGGAGTTGTAATAAAGTTGCATTTTTCTGGCTTAACGCAGCTTGAAAAGATGCGATTGTTTTATCAATTGCGGTTAAAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //