Array 1 1361169-1360957 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020029.1 Lactobacillus helveticus strain D75 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1361168 29 96.6 32 ............................C ATTAGGAGCTTTCCCGAATAGAAGATACGAAG 1361107 29 100.0 32 ............................. TACTTAAAATTATGCACTACTGGAGGCATTTA 1361046 29 100.0 32 ............................. TGTCTATTTTTTCTTTTTGCGCCTCCGTGGCT 1360985 29 72.4 0 .....................CAACCAAA | ========== ====== ====== ====== ============================= ================================ ================== 4 29 92.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CCTATCTGGGTTTACAAAATATATCCTCGTTATCCGATGTATAAAACAAAATATGTAAAAGCATATAAATTAAAGCCTGGAGACACACCCATAGTAAGACATCGTGGTGTTGACTGGGGTTGGACCGTTGGAAAGTCTTATCGTTATTGTATTTTAAAAGACAGCTTTTCTTGGTTTGATGGCTATTCAAAATATAAATGGGTTGACCAAGGCTTACTTGATGGCTCTATGAAAGATGAGCATTTTGCCTACAAATTCACTTGGAAACAGTATTGTCAATTAATTAAAGCCGGTATCTACACAACAGTACATCCAAAGAAATTATGGAACTCCAAAATTAAGAAGATGATTGAAAGATGGAAGCCTGAGACTGATAACAGCTAATAAAAAAGCCCGCCTACTCAAACTAGCAGACGGGTTGTATTTAACACATTAAAAGAACACAGGTTCACTAAAAAGGAGGTGAACACAATGCCAAAAAGAAAAAAATACCGCTATTA # Right flank : AACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACCGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCACATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCAATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCGCCGATTCCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCACG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1491326-1490702 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020029.1 Lactobacillus helveticus strain D75 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1491325 30 100.0 36 .............................. TAGTATTTTAGAAAGAAGACTTATGTCAGTACCTAA 1491259 30 100.0 37 .............................. TTGATCCGGCTTGCTAGGTCTCAAAAAATCGTTTTTA 1491192 30 100.0 35 .............................. ACACAAGCAATTATTAACGTGCCAGCTTTAAACTT 1491127 30 100.0 35 .............................. TTAATTCTTACTAACTTTAAACCTTACGCTTACTA 1491062 30 100.0 36 .............................. ATCGTAAAAACTCATATCTTGCGCCACCTTTTCATT 1490996 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 1490931 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 1490865 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 1490797 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 1490731 29 80.0 0 .A......C..............A-...TT | T [1490711] ========== ====== ====== ====== ============================== ====================================== ================== 10 30 95.3 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : GTTCCACCGTTTCCTTGGCATCATGGACTGAGGCGCGGGTTACGGCATAATCAAGAACATAGCCGTCGTCGCTGACAATCGCATGAACTTTGAAACCATAATAGTAGATCTTTTTGGTTGCCTTATAGCCAATATTCGCAGAACCTTCTTTGTGATTCGATTCCAGTCTTGGCCTGCTAGATAAGCAAAGCCAAGATTAAACTGTCCGTAGCTTTTACTTGGTTGATGTTTCGCCGTTGACTAAATTCAGCCGGAGCAGATAAACGATACCAGTACCGGCAAATTTTGACTAAATCCTTAAAACCAACTTGTGTTAGGATGACTAAAACGCTTAAGCTTAAGGCAGTTCAATCAGATCAGACTCTTTTCTATTGAATACTACAACTTGAGTCTAGTCCGATTGGACTTTTTTATTAACTAAAACGATTTAACTAGCACCACGCGTAACTTAATAGAAATGTAAAGATGCTAAGCGTGAAAATATTAGTAAGACACGGTAT # Right flank : GTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATGAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGACGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCAG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 1492204-1493550 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020029.1 Lactobacillus helveticus strain D75 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1492204 30 100.0 36 .............................. CAGCACAAATTAAATCTGCAAAGGCTCATGGTCTTA 1492270 30 100.0 35 .............................. ATTAGTAGTGGCAGCTTTCCAGTTGTCATTCATTC 1492335 30 100.0 35 .............................. GGTGAGAGTGCTGCTAACATCCAATCACTAAATGA 1492400 30 100.0 36 .............................. TGATGCCATAAAAATTGACTATTTGTGCGGTAGCGA 1492466 30 100.0 36 .............................. TACTTCTCAATCAGCTTTTCAGCATCTTTTTTATCT 1492532 30 100.0 37 .............................. GCGATCACTGGACTAAGCACAAAACCACTTCAGTTGA 1492599 30 100.0 35 .............................. ACTTCCGAAGTACCATTGCCACCAGCCACTGCATG 1492664 30 100.0 36 .............................. AACGGCATAAACCATTGAGTCGACATTGTCATCGTG 1492730 30 100.0 36 .............................. AAGCTCCATTAATGCTGACTTAATCCCCCATGCAGT 1492796 30 100.0 37 .............................. TTATCGGCTTACTGGCTGGCGTAGATTTGATTCTGTG 1492863 30 96.7 36 ...............C.............. TACTTTCACCCATTGTTTTAGCAACGGCAGAAATAC 1492929 30 100.0 36 .............................. AAGTGCCCCTGCGCGCTTATATGCACTCATGCTAGT 1492995 30 100.0 35 .............................. TTTGCTCACAGCCAGGGCTATGCGATTGATTTTTC 1493060 30 100.0 35 .............................. TCCGTCGAAGTATTTCATAGCATCGTCTTTCCAGA 1493125 30 100.0 37 .............................. TCTCACCGTCAACCACAGCAGAAGTCGGGCCATTGTC 1493192 30 100.0 37 .............................. GATCAGTAAACTTAATTCCGTCTAATCGATAGTAGAA 1493259 30 100.0 35 .............................. CAGAAGTTGTTGTTGAAGACTTTTCATTTTTAGGT 1493324 30 100.0 37 .............................. GAAGAAAGTTAAAGAAATATCGAAAAATGGTAAATCA 1493391 30 100.0 35 .............................. CTTTTAGTAGTAACCACAGAAGTTAAATAATTAGA 1493456 30 100.0 35 .............................. CTTTTAGTAGTAACCACAGAAGTTAAATAATTAGA 1493521 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 21 30 99.8 36 CTTTACATTTCTCTTAAGTTAAATAAAAAC # Left flank : GGCAACCAAAAAGATCTACTATTATGGTTTCAAAGTTCATGCGATTGTCAGCGACGACGGCTATGTTCTTGATTATGCCGTAACCCGCGCCTCAGTCCATGATGCCAAGGAAACGGTGGAACTAATGAAAAATACTCATCCAGCCAATCGCTATCTGCTTGGCGATGAGGGCTATGTAGGCAAACGATTGCATGATCGATTAAAGCAAATGGGCTATGAACTGTGGACGCCATATCGGAAAAACATGGCTGGCGCCAAAAAGCACGATGATCGTCAATTGATGGCTATTCGCAGAACAATTGAAAGCGACTTTTCACTTCTAACTTATTACAACGCCGAGAACAATCGAGCGCGCAGTTTAACTGGCTTTCAAGCACGATTAGAAATTGCTATTCTGACTTGTAATCTAGCTTATTGTCTAGAACGATTTAACTAGCACCACGCGTATTAAGTTAAATAAAAACTCAAATCTAATTATTGATGATATTGAAAATAGAAGA # Right flank : CAGTTGCAACTACCAGTCCTACTGTATCAATAGATTCAACGGCCCTATCTGTCGACCTAACCAAAAACGCATCCAAAAATCACTAAAATCATTAGACAAATCGCACAAATATCATTGTACCGGCATTTTGCAAATCTGTCGATCTCCCAGGATTTTCTTCGTATCTTATATCGACAGATTCTTCTTTAGAATATATCCGACGTTAAATCAGTTAAATCCTGACCCATAAATTCTTTATCAAGCCAATCTTTATTTCTATTTTTGAATATAATCACTGAATCAACGTTCTGTCGAATCCATCTATCCAACTCATTCTTCAAGCTTTCAAGCTGGGACTTGGTTAGTTCACCTTCGAATACTGAATTTTGAACATGAGTTAAATACTTTTTACATATTTTGAAAACATGTCTACTTACTTTAGCACCTTGTTTATCCATTACGATATCGTAAACCAGAATCACATACATATCTATTACCATCCCATAACATAAGGCTCATAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACATTTCTCTTAAGTTAAATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //