Array 1 440378-440895 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUKM01000057.1 Halomonas sp. JB380, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 440378 29 100.0 32 ............................. TGCTGTCTGGCGAGGGCTTGGCAGCCAATGAT 440439 29 100.0 32 ............................. GCTGGCGACGCTTCGGAAACTACATGCTGCCG 440500 29 100.0 33 ............................. CACTATGTCGCCTGCGGGGTCGCGGATGATTCG 440562 29 100.0 32 ............................. GTTGGGGGCCTTGCCTTTCACCTTGCCGCAAG 440623 29 96.6 32 ................C............ TTAAATATCATCAAGGCAACGGCGAATTGATG 440684 29 93.1 32 .........G......C............ CGATTGCAGCGGCTGAGGCGGCGAATGTTGAT 440745 29 93.1 32 .........G......C............ TCGATAAAACAACTGATTTTAATGGCGACATA 440806 29 86.2 32 .........G......C..........TC AAGTCCTGGACGTCCTAATGGCTCATGGAGAT 440867 29 86.2 0 A......T...T................A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 95.0 32 CCGTTCCCCACAGGCGTGGGGATGAACCG # Left flank : CAGCTGATTGCCCGCGAAAGGCTGATGAGTAAATACATCGAGTAAGTAATATTCAGCGATTTTCATACTGGTCTCTTCAGGTTGTGTTTCCAAAAGGATTTACGGCCCTCCTTTTGTGCCTGGGCACGGGTGATGCCAATATCTCTTAGCAGCCGGTCATCAAGTATCAGCAACTGGCGGCGGCTGCGGCGACGCTCGCGGTGGGCGCATATTTGAGAGCGTAGCTGAGCCAATGAATCAGCCAATACGCACTACTAACGAGCGCCCTTCACGAGTAACCCGCCGTTGGTGAATGTATATGCCATAAGAGAGGTCGCTCTTCATAAAAACGATGCATACTTATACCTTTGACCGAGGCTTGGTGCGATTTTTATAGATTCCTGCAACGTTCTGATTTTACTGTTCTTTAAGAATATCTTTCTGATCAAAAATTGACCTAAATCGCTGGTGGATTTTCTACTGCCTATTTTTATCTTGCAGAACAGTCATCTACAATTAGA # Right flank : AAACTCAAGATAAGACGGAAATCACTGAAAATGATGGGTTTTGATGCTGATTGAAACGCTGATCGCGGCGTATGCTATACGTGTATATCAAATCTCCAGGAGAGACCATCATGTTGGCAATACGACTGCCCAGCGACATCGAAGCGCGCCTGGAGGCCTTGGCCAAGGCCTCCGGCCGCACCAAGACCTATTACGCCCGTGAAGCTATTCTCAAGCACCTCGATGACCTCGAGGACGTTTACCTAGCCGAGCAGACCCTGGAGCGTCTGCGTCGTGGCGAGGAAACCACGCACTCCCTGGATGACGTGGAGCGTGATCTTGGGCTGGAAAATTGAGCTGACGGGGCCGCCCACAAGCAGTTGAAGAAGTTGGGTCATGTTGAGGCCAAGCGCATCCGTGACTACCTGCGCGAGCGAGTACAGCCGCTTGAGGATTCGCGACAGCTCGCCGAGCAGGGCGTGACCCAGAGCATGTCACGCAAGGGGAATTGTTTAGATAAT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACAGGCGTGGGGATGAACCG # Alternate repeat : CCGTTCCCCGCAGGCGCGGGGATGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCACGGGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 148857-142282 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUKM01000046.1 Halomonas sp. JB380, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 148856 28 100.0 32 ............................ TCCAATTCTTCACGATGCAGGCGCGCGGTTTC 148796 28 100.0 32 ............................ ACTGTACAACTGGCCTCGATGTATGACGTGAT 148736 28 100.0 32 ............................ TGATGAAGTAGCGTTCAAAGTTGAGCCTGAGT 148676 28 100.0 32 ............................ GACAGATTGAAAGGCTTACGAAAGGTTATAGA 148616 28 100.0 32 ............................ GAATAGCTTTTCAAGCACCCGTATTTCGTTGA 148556 28 100.0 32 ............................ TCTACGGGCGCTCTAACCGATCTTAGCTTTAA 148496 28 100.0 32 ............................ ACGGGGCGCTCAATAATCGTATGGCCGACGAT 148436 28 100.0 32 ............................ CGCAGCTCATAGCGCGCGTTTTTCCACGCATC 148376 28 100.0 32 ............................ TCAAGAAAATTAAGTGGCCAGACAAGGTTAAA 148316 28 100.0 32 ............................ GTTACGGGCCAGAGATTGCCCAGCTTTACCAA 148256 28 100.0 32 ............................ TGCAATATCCAGGCTGTGCGATGGCTCTAACG 148196 28 100.0 32 ............................ TAGGGTGATTGGTGCCTACTTTGTGGCGGCGG 148136 28 100.0 32 ............................ ATGAGCTTAAGACAAAGCTGACAGTAGCGTCG 148076 28 100.0 32 ............................ TGAGCGCTGTTACATCGTCGCAACATCGGCCC 148016 28 100.0 32 ............................ CGATAGCGCAGGAAATGGCGCGCTCTTGGGAA 147956 28 100.0 32 ............................ TTCTTGCTCAAAAAGGCATGATGAAACTTCAT 147896 28 100.0 32 ............................ TACTGGGCGCTAATGGAGCGTGAGAAACGGCT 147836 28 100.0 32 ............................ TATACCAGCTTGGCGGCGGCGGAAAAGAATAC 147776 28 100.0 32 ............................ TGGATCGAAACCATTTTCTAGCTTGAACCGAT 147716 28 100.0 32 ............................ TGATATCCAGATGATCATTTTGATAGTGCAGA 147656 28 100.0 32 ............................ TACAAAGAAGCGAGGGCCGCGTGATGCTTAAA 147596 28 100.0 32 ............................ TACCCTCGCCTACCTACCTCCAGTCGAGTCTG 147536 28 100.0 32 ............................ ACCATGCCCAAGTCCTCAAGCGCACGATCAAC 147476 28 100.0 32 ............................ AAGCAAGCGCAAACCAACACTGATGGATAACC 147416 28 100.0 32 ............................ ACTAATCTCGTTTAGTATCGCAAACTGATCAG 147356 28 100.0 32 ............................ GTTACGCCGCCAGACTTTGGCGATGCCGAGCT 147296 28 100.0 32 ............................ TAGCGCGGCTGAATTTGAAGCGTCATGGAAAG 147236 28 100.0 32 ............................ TGAAACGAAAGAAGCCCCAGGTGCTGTAACAC 147176 28 100.0 32 ............................ GTCATCGCGCACCTTGCCTAGTCCGTAGCAGT 147116 28 100.0 33 ............................ GAAACAGCGGCTCAAATGCACGCGATTTATAAA 147055 28 100.0 32 ............................ ATGTGGTCGCTGACGCTCGACGGAATTTCCGT 146995 28 100.0 32 ............................ AGCGGGTACGCTCAGCTGCCAGTGGCTTTTAT 146935 28 100.0 32 ............................ GCGATGAATTGATTGACTCGGCATCTGTATGC 146875 28 100.0 32 ............................ GCTACAGCACCAATGCGGCGGTTACCCCCACT 146815 28 100.0 33 ............................ AACATGACGGCGCGGGCAGCATCGTTGATACGT 146754 28 100.0 33 ............................ GCTCAAGGCGTCGAGGTTGCATCCCGCAACTTC 146693 28 100.0 32 ............................ ATAGTGTTGATTACCCGCTGGAATGTAGAGAA 146633 28 100.0 32 ............................ ACCTGTTGCATCGGATGCTTTCAGGATTGAGT 146573 28 100.0 32 ............................ CATTGGTACCCGCGTGATGCGCCGGGAATACG 146513 28 100.0 32 ............................ TGACCGATGGTGCCGAGCGGGCCGGCGAAGCC 146453 28 100.0 32 ............................ GATAAGACGCAGTACAACGCGTGGCTGGGGGA 146393 28 100.0 32 ............................ AGCTTGAGCTAAAGCGAGAATTCCCCGATCTC 146333 28 100.0 32 ............................ GCTGAAATCAAAGTGGCCAAAATTGAAAAGGG 146273 28 100.0 32 ............................ AAACTCTATTAGGCGGTCGCGTGTTGCGTACA 146213 28 100.0 33 ............................ CAGACGCGCCGCCAAACAGGCCGCCAACATAAT 146152 28 100.0 32 ............................ GGCACCCGTGCGATAGCTAATATTTTTCGCGG 146092 28 100.0 32 ............................ GGTATCAGAGATAGAGAACCTTCTTCTGTTAC 146032 28 96.4 32 .................A.......... ATACTCAGCCCCTTTACCACGTGGGAGCGCAT 145972 28 100.0 32 ............................ AACCACCGCACGGCTTACCCTCACTGCCCGGC 145912 28 100.0 32 ............................ ACGAGGGGCGCTGGACGACGCTTCCGTTTCAG 145852 28 100.0 32 ............................ CGGACGAGTGGGAGGAGTTCGTCGATTACTGC 145792 28 100.0 32 ............................ ATTCATACAGTCGCTTACGGGCGCGCTTTCCT 145732 28 100.0 32 ............................ GCGAGCCAAGTGCCACTCACGAATTTCAGACA 145672 28 100.0 32 ............................ AAGCGCGGGATGCTGCGCGAGCGTCTGCAAGC 145612 28 100.0 32 ............................ GACCAGCTTAGCGGCGCGTTTTACCAGCATAT 145552 28 100.0 33 ............................ AGCCGCCACTCGAAGTGGCAGCGGGCATAACAA 145491 28 100.0 32 ............................ AGTGGCCACGAGTGAGCCACACGCGACTGGGT 145431 28 100.0 32 ............................ TGAAGAGACACACAATTTAATGGGCCCCGATG 145371 28 100.0 32 ............................ TGAGCAAGATCAAACCAGCCGGTAGCTAAACC 145311 28 100.0 32 ............................ TACACCAAGGCCACGGCACCGGCTCCAAAACC 145251 28 100.0 32 ............................ GCCACCAGCGCCGCTGAATAAAGCCAGCTCAT 145191 28 100.0 32 ............................ ACATCAATTTTGACTTCCAGATTCAGGCGCTT 145131 28 100.0 32 ............................ CGACAAAATGACGGCATTCTCCCGCCCTTCCC 145071 28 100.0 32 ............................ AAGCCTCCGACGATGACCAGTAGCGCCGCGAC 145011 28 100.0 32 ............................ TCATCGAAAACCGCATCACCGAGCAGATGATG 144951 28 100.0 32 ............................ TATCCCATGCGCAAGAGGATTTAGCGGCGTCG 144891 28 100.0 32 ............................ AGCATGATTAAGCTGGAGGTTGAGCATGCCGC 144831 28 100.0 32 ............................ GGAAGGGTCGGCCTTGGTGGCAAGCTCTGCCA 144771 28 100.0 32 ............................ TGAGCGCGTCGATGCGATGCGCAGGAGCATCG 144711 28 100.0 32 ............................ CTGATTTCAACGGTCTATCAAAGCAGATCGTG 144651 28 100.0 32 ............................ ATGATGTCGCCCTGCCCCAGATCGATGAACTG 144591 28 100.0 32 ............................ CTCAAATTCCGTCGTGAATATCCTGACGCTTT 144531 28 100.0 32 ............................ CACGGCACGCTGCTCTATCGTTAGCTCAACGT 144471 28 100.0 32 ............................ AACATCATCGTAGGCGACCAGCATCAATCGAC 144411 28 100.0 32 ............................ ATTGGCGACAACTCTTCGGAAATTGAAAATAC 144351 28 100.0 32 ............................ TCAACGCAACCAACATAGATGTGGACAATCTC 144291 28 100.0 32 ............................ ACCGGAGCGGCTGAAATGTTGCGATGCACTGG 144231 28 100.0 32 ............................ ATCGACACTTTCCGCAACGCCGTCAATGGTGT 144171 28 100.0 32 ............................ CAAAGCCACCGCCGCCGCCGTATGCGCCTGCG 144111 28 100.0 32 ............................ ATAGAGACCGTCCTGCATGCTGAACGACCCTT 144051 28 100.0 32 ............................ TCAGCCTCGCGGCCCATGCCCAGCAAGCGCTG 143991 28 100.0 32 ............................ ATCACGGCGGCGGAAAGTGAGCAGGCGCGCAA 143931 28 100.0 32 ............................ GCATGGCCGAGATTTCCGACCGCATGGATCAG 143871 28 100.0 32 ............................ TCACCAACGGCACTGCTAAGCGACTTCATCGA 143811 28 100.0 32 ............................ CAACCCCCACTCGAAGTGGCGGCGGGCATAAC 143751 28 100.0 32 ............................ GATATCGATGCACCAGATCATTAAGGTCATGA 143691 28 100.0 32 ............................ CGGTGATGTGCAGCAACGACAACCGGCGCGAC 143631 28 100.0 32 ............................ AGAAAGAACCCCACTTCATGCACCCAGAACTC 143571 28 100.0 32 ............................ CCCAGCGCGGCCTGCTCGGCAGCTTGGCGGGC 143511 28 100.0 32 ............................ GATCGGCAGCAACCACCAACCAGGGCGGCGCC 143451 28 100.0 32 ............................ CATTAATTCACGCGTAAATTCACGCATAGCGC 143391 28 100.0 32 ............................ GCAGAAAAAGCAGCGCTTCAAGATCAAACGAC 143331 28 100.0 32 ............................ AGCGCGCGCAACGCTTCAAGGCGGCTGCCGTG 143271 28 100.0 32 ............................ TGACGCTTTCATCAAGCTCCCCGACAAGCGTT 143211 28 100.0 32 ............................ AGCACCCACCAGAGCGCCGCGAAAAAGACGAC 143151 28 100.0 32 ............................ GCAACACGATGACGCTCGCCCTTAGCGAGCGT 143091 28 100.0 32 ............................ ACAGTGCGGCGAATCGACCCCGCTCAAGAGGC 143031 28 100.0 32 ............................ ACATCGAGCACCAGTTGTGCGTGCCCGATATC 142971 28 100.0 32 ............................ GATGATCCAGGCGCGCCGCCAAACAGGCCGCC 142911 28 100.0 32 ............................ CTAAACCAGCCGTCCGCTAGGGTGGTTATGTC 142851 28 100.0 32 ............................ AATCCTTGCGCTGTGCCTTGAATGTCGCCAGC 142791 28 100.0 32 ............................ AGAGCAGATTATTACCCATAAGCGTGCATGCG 142731 28 100.0 32 ............................ ATCACGAAGCTCTGTGCTGTGGCAAATTATGC 142671 28 100.0 32 ............................ AAGTGTCACGGTGCCTATCCAGCCGACCGATA 142611 28 100.0 32 ............................ AGGTGCAAACCGTCCGCGATGCAGTCATGCAG 142551 28 100.0 33 ............................ GATTGCTGATACCCAGGAGCGCGAGCTATGAAT 142490 28 100.0 32 ............................ AACCTCTCTATTGATCGTCGCTGGACCAACTG 142430 28 100.0 32 ............................ GCCTCAACACTACCCATTACCGCAGCGTTATC 142370 28 96.4 32 ..................G......... ATACACACGCCGATGTTGCCAGTGTTATAGCC 142310 28 100.0 0 ............................ | C [142285] ========== ====== ====== ====== ============================ ================================= ================== 110 28 99.9 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGAGCCTTGAACAACTGATGGCTGTTCAGTGGCTAACCGGCATGCGAGATCACGTTAGTGTTAGCGACGCGTTGGCGACCCCGGCCAATGCGAAGCATATCAACGTCGCGCGCAAGCAGTTCAATACAGGAAGCCCCAGCCGTGCGAAGCGCTATGCCAAGCGGCATGATATTTCAGAAGAAGCAGCGCGTGATATCTACGCAAAAGTAGCGGAAAAGCGTATTGAGTTGCCGTTTGTGCAGATCAGTAGCCGCTCTACACAACAGCGTTTTTGCTTATTCATTGAACATGGAAAGCCGCAGGAAAAAGCGGTGGCAGGCACATTTAACCATTATGGCTTAAGCAGTAACGCCACCGTGCCCTGGTTTTGACCCTTTTTCTTTGTATGAATAAGGACCGCGATTAATCAACCACTTAGCGGTATCTCCCAGGAAAGGGTGATACCGCTTTTTTTGGGCAAAGCTCTTTAACAATCAGTAGATTATTTTTGGTAAGCTCTA # Right flank : CTAGACAAGCGTTACTATCTTTTAGTGCTGCCTTGAAATTAACGCTAGCGTTCAGCTTTAAGCAAAAGAGCCTCAAGGGAGGCTCTTTGAAATAACGGTGTTGGAACCGCTTATTTGTCCTTGTCCCAGTGTTCAAAGGCGCGCTTGTCATCGGGCAGCCGGACGATGTCACCGATGTTGAGATCAGGAAGGCCTTTAATATGGTGGCCTTTGGTATCCATGATGGCGGCAACGCTGCCAATACTAACGGCGTCTTCTTCTCGGTAGGCTTCCACTTTTACGTGGACAATTTTGCCTTGGTAGCGGGCGGATAAAATATCGCCGGTGCCAATGCGGGCGTGTTCATGGTGGTCGTTAGCAAACAGTTTGGATACGCTGTCTTTGCCGGGATCTTCCCATTCGATATGTCGATGCATCGTGGTTTCCTTGTAAGTGGGCCGAAAAACACAAGTGTAGTTTGATTTTTATTAGTTTTGCTAGTTATTGGTTAATGGGAACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //