Array 1 104179-104926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWGZ01000024.1 Hafnia paralvei strain GTA-HAF03 Cont24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 104179 28 100.0 32 ............................ ACAAAATTTTTACATTCCTATTTTACTAGATA 104239 28 100.0 32 ............................ CTGCGCGCCGGCTTTTTCTGCATCACGACCCA 104299 28 100.0 32 ............................ AGAACAGGAATTATCGGCTACCCGTTCGACAT 104359 28 100.0 32 ............................ TTATCCTTCTTGCTGCGAGGTTCGGTAAGAAT 104419 28 100.0 32 ............................ ACGTCAAAAACTATCAAACGCTGGGTACAAGA 104479 28 100.0 32 ............................ AGTGCAAAAACAGCAGATCGATACAATCAACA 104539 28 100.0 32 ............................ TGAGCGAGCGCGCCGAGTTGTTGCAGGGTGGC 104599 28 100.0 32 ............................ TGCCAGAAGGGGGCGACCTGAACAACGGTCGG 104659 28 96.4 32 ...C........................ ATATGTCTCGTTCAACCACCCTTTATTGCCTT 104719 28 96.4 32 ...C........................ TTGGAACCGTGTCAATAACTGCATTTTGAACA 104779 28 96.4 32 ...C........................ ATTGGCCGCCGGACGACGTGACTGTCCAAAGT 104839 28 96.4 32 ...C........................ GCCTTTTGTGGTTCGTTTAATGCAATTGGTAT 104899 28 92.9 0 ...C.......C................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.3 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTTGGTGCAGTGGTAGGAACGTTGTTGGCACTGGCTTCGGCGCGCAGTGAATGGCCGATGGTCAGCTCAATGTTCTTATGCATTTTCGCCGCAATGATGTTGTTCCTGTACGCTTCTAGACCTTCCAAGAGTAGCCGCGTAGAACCTGTCTGAGCTTGACTGCTCGTCTCCCCGTCGCGGAAAGAGGCGGGGAGGCCGACGACTGGGCGTTCGGAGATATCTGCGGCAACCGTGTGTTGACCATATCACACAGCTTTAGCATCAGATACGCAGATGCTTTCAGCCACGCACTCACCTGATCCAAACTCTTCTACGGGATTTGAACCCCATTCTCCAGTGATTCACTTAGAAATGAAAATCCGTGGCGCAAAACCCTTTTTTCCTACCCACACGTAACGTATTGATTTTATGTGTGGTGCCGAGCCAGAAATAAAAAAGGTCTTTTAACCAAAAATGAGTTACCGCTCTGATTAGTCAAACCTTTTTGCTATTATTCTACA # Right flank : AATATAATCGTGCTAACTATTTTCAGTTTTTGGCATGGATTTTCATTTTTTTAACAGAACATCTAACTTAACTAGGTAAAATCCATTGTGAAAAGACAAAGCATTAAAGTTATTTAGCATTCGTTGTGCTTTTTATTTTCCATCAAAACAATTAATTAGCTAATTTCATTGATCATGGTTCAGTGATTTATTGTATTTTGTATGTAAATTGAAAAACACGACAAAGTAATTAAAATGAAACGAAAATGGTTGTGATAATAAAGATAAAAGTATACATATAACCCCAATAACCGATCTCCCTCCATCGTGGTACTTCTAGAGTGAAAAAATGGAGTAGCGCCAACAAGATCGTGCTTTAGGCTGTTTATTCTTCGGTGTTACCGAAATGTAATAAACAAACTCATAACAAAATGACGATTAAGTCATCAAATAGCCGGAATAGTGCGAACTTAGGTTTACGATGTGAGTTTTTTGTGAAAAAATTGTAGTTAGTTTTTAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 114455-115802 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWGZ01000024.1 Hafnia paralvei strain GTA-HAF03 Cont24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 114455 28 100.0 32 ............................ GCGTTTTCGTGCTGCTCCCACGCAGCCTGAGA 114515 28 100.0 32 ............................ CAACTACGCCCGCAGGTTGCTACATCTGCACT 114575 28 100.0 32 ............................ CTCTTCATCAGTGCAAACGATAAGGCTTGTTT 114635 28 100.0 32 ............................ AATAAACGCATGACATTGCTAACCAAAGAGGG 114695 28 100.0 32 ............................ GTGTTAGCGAGTGGCGATAAAAACGCCGGCTA 114755 28 100.0 32 ............................ AGTTGTTTGCTGATAGCTCAACTACGGCGCTT 114815 28 100.0 32 ............................ TAGCAAGCCACGCCCGAGCAGAGCGCCAATGA 114875 28 100.0 32 ............................ GGGGACTCCGATTGCACTTGTAACACCTTCAG 114935 28 100.0 33 ............................ TCCGCAAGTTCCACCTGCTATGGCTGCATTGAT 114996 28 100.0 32 ............................ TAACGAACCTTTCGGCTTGATATCTATCAATT 115056 28 100.0 32 ............................ AAGACCACCGCCAAGCAATGCCCCGATAAGAA 115116 28 100.0 32 ............................ TGTATATCGACCAGCATTAATAGCACCAATTC 115176 28 100.0 32 ............................ AGACGGCAAATCAACAATAGAGTTACCTTTCT 115236 28 100.0 32 ............................ TATACAATTTAGAAGAAGGATTTGCTCAGGCA 115296 28 100.0 32 ............................ ATAGCTGAGCAACCAAACAGCGAGAAAGAGCT 115356 28 100.0 32 ............................ AATGTTGTATGAGCCAAACTTTGTGCCGGCAA 115416 28 100.0 32 ............................ AACCAGACCCCGAAAGGGAGCTCGGTGCTGTC 115476 28 100.0 32 ............................ AGTATGTGAACAACTGACTGCTGATGGATTCC 115536 28 100.0 32 ............................ AAACCACAAACGCGGCACACCATGCAGCTGCA 115596 28 100.0 32 ............................ GAAAACCGAAACCGAACAGCGAAAAAAACCGA 115656 28 100.0 32 ............................ CATGAGTGTGGGTAGCCGTTGCGCGCTAATTT 115716 28 100.0 32 ............................ TCACAATTTACAAGAAAATTGCTCAATAGATC 115776 27 92.9 0 ............A...........-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGTGCAGGCAGCTTAGAAA # Left flank : TACACAATGCAGCGACATTCAACGGATCCCTGAGAATGTGATGCATTGCACCGTGAGTCGAGTGCAGGTGAAAAGCAGTGCGGAACGACTGCGGCGCAGATCGGTTAAAAAAGGCTGGCTCACCGAGGAACAGGCGCGGGAGCAAATTCTGGATGCCAACGAGCAACGCACTTCACTGCCCTTTATTTCGTTGAAAAGCCTATCCACTGGACAAATGTTTCCGCTGTTTATCCGCCAAGGGAAAGCGCAGTCTCATCCTCAGACGGGAACCTTCAGTAGCTACGGCTTAAGCTCAACCGCCACTGTGCCGTGGTTTTAGTTTTGTTGGTTTTCAGCGCCCGCCTGAAACTAGACGGGCGCTTCAGCTAAAACCCTTTTTTATTGCTTGCTCGTAACTTATTGATTTTCAATAATCATGGATGATGCAAAATAAAAAGGGTTTTATAAAGAGTAACAGGCTATTGTTTTGATTTATAAAATCTTTCTCCAGTTATTCTACA # Right flank : ACGGGTTTGTCGTTTAGGCTACGAACTCACGGCCGTTCTTTTGCCGATTTAGCCTATCTCAGTCAGCAAAGGCTAATAGCTGGCGCGTGTAGTCTTGAGTTGGATTGGCAAAAACTTCAGCGCAGTTTCCGTGCTCAATCACTTTTCCGTTTCGCATCACCATCACCTGATGGCACAGTGACCGCACTACCTGCAAGTCATGGCTGATGAACAGGTAGCTGAGCTGGTGGCGTTGCTGAAGTGTTTTCAGCAGCGTTAAAATCTGTGCCTGCACGGAGCGATCGAGCGAAGAGGTCGGTTCGTCCAGTATCAATAACCGAGGTTCAAGAATTAATGCGCGGGCAATCGCAATACGCTGACGCTGACCGCCGGAGAACTCGGTGGGATAGCGATAACGAGTTTCTGGATCGAGCCCAACTTCGTTCATAGCGCTGATTACCCGCTCTTCCCGTTGCTGTTCGTTCAGCTTTTGGTGTACCTGCAAGCCCTCGGCGATGATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //