Array 1 4231616-4233108 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OU015340.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027944 isolate AUSMDU00027944 chromosome C1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ================================= ==================
4231616 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG
4231677 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
4231738 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
4231799 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
4231860 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
4231921 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
4231982 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
4232043 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT
4232104 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC
4232165 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
4232226 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC
4232287 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA
4232348 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA
4232409 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
4232470 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
4232531 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
4232593 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA
4232654 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG
4232715 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
4232776 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA
4232837 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
4232898 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA
4232959 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
4233020 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT
4233081 28 82.8 0 ...............A.AA....-.G... |
========== ====== ====== ====== ============================= ================================= ==================
25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT
# Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG
# Questionable array : NO Score: 6.17
# Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41
# AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.65,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//
Array 2 4250457-4252421 **** Predicted by CRISPRDetect 2.4 ***
>NZ_OU015340.1 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027944 isolate AUSMDU00027944 chromosome C1, complete sequence Array_Orientation: Forward
Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion
========== ====== ====== ====== ============================= ========================================================================== ==================
4250457 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA
4250518 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG
4250579 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC
4250640 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC
4250701 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG
4250762 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT
4250823 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC
4250885 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT
4250946 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA
4251007 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG
4251068 29 96.6 32 ..........................A.. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA
4251129 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA
4251190 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC
4251251 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC
4251312 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
4251373 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC
4251434 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG
4251495 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG
4251556 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC
4251617 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA
4251678 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC
4251740 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC
4251843 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT
4251904 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA
4251965 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA
4252026 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA
4252087 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT
4252148 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC
4252209 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
4252270 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
4252331 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
4252392 29 96.6 0 A............................ | A [4252418]
========== ====== ====== ====== ============================= ========================================================================== ==================
32 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG
# Questionable array : NO Score: 6.14
# Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1,
# Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat : NA
# Directional analysis summary from each method:
# Motif ATTGAAA(N) match prediction: NA Score: 0/4.5
# A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37
# Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37
# Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41
# AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27
# Longer leader analysis prediction: NA
# ----------------------------------------------------------------------------
# Final direction: F [5.92,0 Confidence: HIGH]
# Array family : I-E [Matched known repeat from this family],
//