Array 1 240140-242669 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP022843.1 Halomonas hydrothermalis strain Slthf2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 240140 28 100.0 33 ............................ TTAATTATTGCCATTATCCTAGCAGACGATCCC 240201 28 100.0 33 ............................ TAAATTGCATGGCGTAAGTGACTATGTTTATCA 240262 28 100.0 33 ............................ TGCGCGCTCTTTTCTTTGCGATCTGTTTAGAAA 240323 28 100.0 33 ............................ TCTCTTACGGATGAGGCGGCATTTGAGATTATG 240384 28 100.0 33 ............................ TAAACTGGCACGCACAGCAGCCTATAAAGCTGC 240445 28 100.0 33 ............................ TGTAATATCGCATGGTAAAGCCCCTTTATATTA 240506 28 100.0 33 ............................ CGGCTTTGCAGTACCTAGGATGGGATGGGGAGG 240567 28 100.0 33 ............................ TACAACGCTCCACTAGCTCTTGTACCGTTCCCG 240628 28 100.0 33 ............................ TGATCTTCTCGTAAAGCGCGTCGATGCGATCAC 240689 28 100.0 33 ............................ TAATGCTTATAGGCAGACCTGGAAGCAAGCCTG 240750 28 100.0 33 ............................ TGCTGGCATTCTTCGCACCCGCTGGATACAGAG 240811 28 100.0 33 ............................ TGTCTAACTCTTCAAGCTTGCGTCGATTGGTAT 240872 28 100.0 33 ............................ TATTGCGCAAGAACAACAAGCCGCTGAGTTAAA 240933 28 100.0 33 ............................ CTCTTGTACCGTTCCCGTGCCGTCGTTGTAAAA 240994 28 100.0 33 ............................ CGACTCAAGTTCGACACATACGACCACAACCAG 241055 28 100.0 33 ............................ TCATCTTTAGGAGGTTACGTGGCACAAGAAGGC 241116 28 100.0 33 ............................ TCCCACCATCGTTACATCCTCCCCATCCCATCC 241177 28 100.0 33 ............................ TGGATAGCTTGTCTCGGTAGATAACTTTATCAG 241238 28 100.0 33 ............................ TTGTCCATTGTTTGCAGACCGTAGCGCAGAACA 241299 28 100.0 33 ............................ TATTATTCTTGGCAAGTGACAACCAATTCGGAG 241360 28 100.0 33 ............................ CATTACCAACCTACGCAAGATTATCGACAATGG 241421 28 100.0 34 ............................ TACTCACAAGAGAGTTGTCAGCAGACAAGCCTGA 241483 28 100.0 33 ............................ TACTACGACGACTTAAGCGAAGAAACCGGTGAG 241544 28 100.0 33 ............................ CGTGATGCTTTGACACACGTAAGCAAAATGGAG 241605 28 100.0 33 ............................ CCATAAACGCTGACATGTTCATCCGTGCATTTG 241666 28 100.0 33 ............................ TGACTATTCCCACTTACTGGATGAAAATGTGCT 241727 28 100.0 33 ............................ CAGACTAGCACGCACAGCAGCCTATAAAGCTGC 241788 28 100.0 33 ............................ CAGACTAGCACGCACAGCAGCCTATAAATCTGC 241849 28 100.0 33 ............................ TATAAAGGGATGGTCATGCGATATTACATTATG 241910 28 100.0 33 ............................ TGACTCACACTAAGGAGTACGTCGCGTGGAGAA 241971 28 100.0 33 ............................ TGCCTGGGTGGTTTCATCTTGGATGCGGTTGAT 242032 28 100.0 33 ............................ TAGCTGATGTTATTTGCGATGTGCCGTGACGGC 242093 28 100.0 33 ............................ TTGAGCAGAATATGATTGAGGCAATCCGTGACA 242154 28 100.0 33 ............................ CAATCTTCATCAGACTGAATGCGACGAGATAAA 242215 28 100.0 33 ............................ CAAAACTACGCAAAGCACAAGAAGACCTCTTAC 242276 28 100.0 33 ............................ CGCAGCTTGCCGGGCATAATCTGGTTGCCCACA 242337 28 100.0 33 ............................ CTTTTTAGCATCAGCGGTGATGTTGGACGACAC 242398 28 100.0 33 ............................ TGGAGTATTCGCTGGCAAAAACAGCACGCTCGA 242459 28 100.0 33 ............................ CCTTTAAGCGCCTAATTGAGGAGCCTGGATCTT 242520 28 100.0 33 ............................ CAGGCATGGGCAGTCACTTGATGTAAGAAAGCC 242581 28 100.0 33 ............................ CCAAATCGCGCACTCATCCTGGCTTGCCGCCAG 242642 28 78.6 0 ..............T...A..A..CAC. | ========== ====== ====== ====== ============================ ================================== ================== 42 28 99.5 33 GTCTTCCCCACGCCCGTGGGGGTGTTTC # Left flank : CTTTATAAGGAACATTTATGTATCGATTTAGCGTTCATGCTAACGCGAGACATGGCCGGTCGTTACAACAAGCAAAAGGTATCTGTAGCCTTTCGTGAGCGAGTCATTGAAATGGACCTTCTGGCACGGTTGGCAGATGACATACCAAACATGCTGGGGGTGAGCCGTGCTCGTGGTCGTCGCAAATGATTTGCCACCTGCTGTACGTGGACGAATGAAGCTCTGGTTTGTTGAGCCACGGGCTAATGTATTTGTTTCGGGAGTTAAAGACTCGGTTGCTAAAACGGTGGTTGATTACTTGTACCAGCATTGCCCGCCCGAATCTGGCGTGGTTATTTTTCGTTCCTTACCTAATCCTCCAGGATATGAAGTGCGAACGGTTGGGCCCACAAGAAAAGCATTAACAGAAATCAGTGGACTGCAGTTAGTTATTGAAACACTGAAAAACCAATAACTCCTATATCTTGTGTTTACAGGGGGATCTTTAACAATATACTGGT # Right flank : CGTTCCAGAAAAAGTGCGCAATACGCCAGACAATCAAGGATCGCGCCCCACGCGAGCGCATGCATCGAAACCTTAATGGTGTGATTGACCGCGTGCGCTGCCGCCCAGGCCGCTTTGGTGCTACCTGAAACTGGTATCGCTGTGCAGCGTTTTCGCGGGTGCGCTAACGCTTACGCCGCGCTACTCGAAATATGCATTACTTTCATTAATGAGTAGGTTAGATGTTGCCGCCCAGGCCGTTCAGTGTTTAGTCGGTGTGAATGCTCTCTCAGTTTCGGCGTCATCACCACAATGGTGCTTTAATTGTTAAATATGGTGAGGAAGAGAGTGTTCAAAAATAAAACTGCTTTAACATAATGATTGCGGTGCGTTTCGGTAACTGCCATCTAGAGGATATTACGTCGTGGAAAACTTTCTTGAGCAATTTGGAGCTTATGTTCCTTTGATTATCAATGCCGTGAAAGCATTGTTGGTGTTGATAGTGGGCTGGATGGCTGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCCCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //